Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06175

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06165 and AMB_RS06170 are separated by 74 nucleotidesAMB_RS06170 and AMB_RS06175 are separated by 1 nucleotidesAMB_RS06175 and AMB_RS06180 are separated by 1 nucleotides AMB_RS06165: AMB_RS06165 - CBS domain-containing protein, at 1,287,022 to 1,289,664 _RS06165 AMB_RS06170: AMB_RS06170 - hypothetical protein, at 1,289,739 to 1,290,530 _RS06170 AMB_RS06175: AMB_RS06175 - prolyl oligopeptidase, at 1,290,532 to 1,291,428 _RS06175 AMB_RS06180: AMB_RS06180 - methyl-accepting chemotaxis protein, at 1,291,430 to 1,293,127 _RS06180 Position (kb) 1290 1291 1292Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1289.566 kb on - strandat 1289.681 kb on + strandat 1289.715 kb on + strandat 1289.715 kb on + strandat 1289.715 kb on + strandat 1289.716 kb on - strandat 1289.718 kb on + strandat 1289.718 kb on + strandat 1289.719 kb on - strandat 1289.719 kb on - strandat 1289.882 kb on + strand, within AMB_RS06170at 1289.882 kb on + strand, within AMB_RS06170at 1289.882 kb on + strand, within AMB_RS06170at 1289.882 kb on + strand, within AMB_RS06170at 1289.883 kb on - strand, within AMB_RS06170at 1289.883 kb on - strand, within AMB_RS06170at 1289.884 kb on + strand, within AMB_RS06170at 1289.884 kb on + strand, within AMB_RS06170at 1289.884 kb on + strand, within AMB_RS06170at 1289.884 kb on + strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.946 kb on + strand, within AMB_RS06170at 1289.947 kb on - strand, within AMB_RS06170at 1289.947 kb on - strand, within AMB_RS06170at 1289.947 kb on - strand, within AMB_RS06170at 1289.992 kb on - strand, within AMB_RS06170at 1290.048 kb on + strand, within AMB_RS06170at 1290.112 kb on + strand, within AMB_RS06170at 1290.112 kb on + strand, within AMB_RS06170at 1290.528 kb on + strandat 1290.528 kb on + strandat 1290.528 kb on + strandat 1290.528 kb on + strandat 1290.529 kb on - strandat 1290.529 kb on - strandat 1290.529 kb on - strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.606 kb on - strandat 1290.606 kb on - strandat 1290.606 kb on - strandat 1290.606 kb on - strandat 1290.606 kb on - strandat 1290.866 kb on + strand, within AMB_RS06175at 1290.866 kb on + strand, within AMB_RS06175at 1290.867 kb on - strand, within AMB_RS06175at 1290.867 kb on - strand, within AMB_RS06175at 1290.867 kb on - strand, within AMB_RS06175at 1290.867 kb on - strand, within AMB_RS06175at 1290.867 kb on - strand, within AMB_RS06175at 1290.995 kb on + strand, within AMB_RS06175at 1290.995 kb on + strand, within AMB_RS06175at 1290.996 kb on - strand, within AMB_RS06175at 1291.114 kb on + strand, within AMB_RS06175at 1291.114 kb on + strand, within AMB_RS06175at 1291.115 kb on - strand, within AMB_RS06175at 1291.115 kb on - strand, within AMB_RS06175at 1291.130 kb on + strand, within AMB_RS06175at 1291.131 kb on - strand, within AMB_RS06175at 1291.131 kb on - strand, within AMB_RS06175at 1291.131 kb on - strand, within AMB_RS06175at 1291.131 kb on - strand, within AMB_RS06175at 1291.131 kb on - strand, within AMB_RS06175at 1291.131 kb on - strand, within AMB_RS06175at 1291.315 kb on + strand, within AMB_RS06175at 1291.316 kb on - strand, within AMB_RS06175at 1291.316 kb on - strand, within AMB_RS06175at 1291.316 kb on - strand, within AMB_RS06175at 1291.316 kb on - strand, within AMB_RS06175at 1291.316 kb on - strand, within AMB_RS06175at 1291.316 kb on - strand, within AMB_RS06175at 1291.431 kb on + strandat 1291.431 kb on + strandat 1291.432 kb on - strandat 1291.780 kb on + strand, within AMB_RS06180at 1291.782 kb on + strand, within AMB_RS06180at 1291.782 kb on + strand, within AMB_RS06180at 1291.783 kb on - strand, within AMB_RS06180at 1291.783 kb on - strand, within AMB_RS06180at 1291.783 kb on - strand, within AMB_RS06180at 1291.924 kb on + strand, within AMB_RS06180at 1291.924 kb on + strand, within AMB_RS06180at 1291.924 kb on + strand, within AMB_RS06180

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,289,566 - -0.1
1,289,681 + +1.5
1,289,715 + -0.7
1,289,715 + +0.5
1,289,715 + -0.4
1,289,716 - -0.5
1,289,718 + -1.1
1,289,718 + +0.1
1,289,719 - -0.5
1,289,719 - +0.1
1,289,882 + AMB_RS06170 0.18 +0.8
1,289,882 + AMB_RS06170 0.18 -1.1
1,289,882 + AMB_RS06170 0.18 -0.0
1,289,882 + AMB_RS06170 0.18 -1.0
1,289,883 - AMB_RS06170 0.18 -2.5
1,289,883 - AMB_RS06170 0.18 -0.1
1,289,884 + AMB_RS06170 0.18 -0.0
1,289,884 + AMB_RS06170 0.18 -0.0
1,289,884 + AMB_RS06170 0.18 -2.3
1,289,884 + AMB_RS06170 0.18 +1.5
1,289,885 - AMB_RS06170 0.18 -1.0
1,289,885 - AMB_RS06170 0.18 -1.0
1,289,885 - AMB_RS06170 0.18 -3.0
1,289,885 - AMB_RS06170 0.18 -1.5
1,289,885 - AMB_RS06170 0.18 -0.9
1,289,885 - AMB_RS06170 0.18 -2.2
1,289,885 - AMB_RS06170 0.18 -0.8
1,289,885 - AMB_RS06170 0.18 -0.0
1,289,885 - AMB_RS06170 0.18 +0.8
1,289,946 + AMB_RS06170 0.26 +0.6
1,289,947 - AMB_RS06170 0.26 -0.2
1,289,947 - AMB_RS06170 0.26 +0.4
1,289,947 - AMB_RS06170 0.26 -1.7
1,289,992 - AMB_RS06170 0.32 +0.8
1,290,048 + AMB_RS06170 0.39 -2.0
1,290,112 + AMB_RS06170 0.47 -0.5
1,290,112 + AMB_RS06170 0.47 -0.9
1,290,528 + -1.6
1,290,528 + -1.3
1,290,528 + -3.2
1,290,528 + +1.3
1,290,529 - -1.6
1,290,529 - -0.1
1,290,529 - +0.7
1,290,605 + -1.5
1,290,605 + -1.3
1,290,605 + -1.6
1,290,605 + -2.0
1,290,605 + -1.0
1,290,605 + -1.0
1,290,605 + +0.5
1,290,605 + -0.8
1,290,606 - -0.5
1,290,606 - -0.3
1,290,606 - -0.4
1,290,606 - -3.9
1,290,606 - -1.1
1,290,866 + AMB_RS06175 0.37 -0.4
1,290,866 + AMB_RS06175 0.37 -1.0
1,290,867 - AMB_RS06175 0.37 -1.0
1,290,867 - AMB_RS06175 0.37 -2.5
1,290,867 - AMB_RS06175 0.37 -1.6
1,290,867 - AMB_RS06175 0.37 +0.2
1,290,867 - AMB_RS06175 0.37 +0.3
1,290,995 + AMB_RS06175 0.52 -1.5
1,290,995 + AMB_RS06175 0.52 -0.0
1,290,996 - AMB_RS06175 0.52 -1.5
1,291,114 + AMB_RS06175 0.65 -0.3
1,291,114 + AMB_RS06175 0.65 +0.1
1,291,115 - AMB_RS06175 0.65 -0.2
1,291,115 - AMB_RS06175 0.65 +2.2
1,291,130 + AMB_RS06175 0.67 +0.6
1,291,131 - AMB_RS06175 0.67 -0.2
1,291,131 - AMB_RS06175 0.67 -2.0
1,291,131 - AMB_RS06175 0.67 -0.5
1,291,131 - AMB_RS06175 0.67 -0.4
1,291,131 - AMB_RS06175 0.67 -1.0
1,291,131 - AMB_RS06175 0.67 +0.0
1,291,315 + AMB_RS06175 0.87 -1.7
1,291,316 - AMB_RS06175 0.87 -0.4
1,291,316 - AMB_RS06175 0.87 -0.2
1,291,316 - AMB_RS06175 0.87 -0.5
1,291,316 - AMB_RS06175 0.87 +0.5
1,291,316 - AMB_RS06175 0.87 +0.0
1,291,316 - AMB_RS06175 0.87 -0.0
1,291,431 + -0.6
1,291,431 + +0.1
1,291,432 - -0.8
1,291,780 + AMB_RS06180 0.21 +0.9
1,291,782 + AMB_RS06180 0.21 -0.6
1,291,782 + AMB_RS06180 0.21 -2.8
1,291,783 - AMB_RS06180 0.21 -0.8
1,291,783 - AMB_RS06180 0.21 -0.7
1,291,783 - AMB_RS06180 0.21 -1.4
1,291,924 + AMB_RS06180 0.29 -0.1
1,291,924 + AMB_RS06180 0.29 -1.6
1,291,924 + AMB_RS06180 0.29 -1.3

Or see this region's nucleotide sequence