Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS06065 and AMB_RS06070 are separated by 2 nucleotides AMB_RS06070 and AMB_RS06075 overlap by 1 nucleotides AMB_RS06075 and AMB_RS06080 are separated by 140 nucleotides AMB_RS06080 and AMB_RS06085 are separated by 86 nucleotides AMB_RS06085 and AMB_RS06090 overlap by 4 nucleotides
AMB_RS06065: AMB_RS06065 - chromosome partitioning protein ParB, at 1,269,056 to 1,269,955
_RS06065
AMB_RS06070: AMB_RS06070 - chromosome partitioning protein ParB, at 1,269,958 to 1,270,845
_RS06070
AMB_RS06075: AMB_RS06075 - recombinase family protein, at 1,270,845 to 1,272,338
_RS06075
AMB_RS06080: AMB_RS06080 - hypothetical protein, at 1,272,479 to 1,272,832
_RS06080
AMB_RS06085: AMB_RS06085 - hypothetical protein, at 1,272,919 to 1,273,191
_RS06085
AMB_RS06090: AMB_RS06090 - DUF2924 domain-containing protein, at 1,273,188 to 1,273,637
_RS06090
Position (kb) 1270
1271
1272
1273 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1269.927 kb on - strand at 1270.243 kb on + strand, within AMB_RS06070 at 1270.292 kb on + strand, within AMB_RS06070 at 1270.292 kb on + strand, within AMB_RS06070 at 1270.293 kb on - strand, within AMB_RS06070 at 1270.293 kb on - strand, within AMB_RS06070 at 1270.293 kb on - strand, within AMB_RS06070 at 1270.437 kb on - strand, within AMB_RS06070 at 1270.437 kb on - strand, within AMB_RS06070 at 1270.437 kb on - strand, within AMB_RS06070 at 1270.437 kb on - strand, within AMB_RS06070 at 1270.506 kb on + strand, within AMB_RS06070 at 1270.507 kb on - strand, within AMB_RS06070 at 1270.987 kb on + strand at 1270.987 kb on + strand at 1270.987 kb on + strand at 1270.987 kb on + strand at 1270.987 kb on + strand at 1270.987 kb on + strand at 1270.987 kb on + strand at 1270.987 kb on + strand at 1270.987 kb on + strand at 1270.987 kb on + strand at 1270.988 kb on - strand at 1270.988 kb on - strand at 1270.988 kb on - strand at 1270.988 kb on - strand at 1270.988 kb on - strand at 1270.988 kb on - strand at 1270.990 kb on + strand at 1270.990 kb on + strand at 1270.990 kb on + strand at 1270.990 kb on + strand at 1270.991 kb on - strand at 1270.991 kb on - strand at 1270.991 kb on - strand at 1271.057 kb on + strand, within AMB_RS06075 at 1271.263 kb on + strand, within AMB_RS06075 at 1271.264 kb on - strand, within AMB_RS06075 at 1271.264 kb on - strand, within AMB_RS06075 at 1271.264 kb on - strand, within AMB_RS06075 at 1271.264 kb on - strand, within AMB_RS06075 at 1271.302 kb on + strand, within AMB_RS06075 at 1271.302 kb on + strand, within AMB_RS06075 at 1271.302 kb on + strand, within AMB_RS06075 at 1271.302 kb on + strand, within AMB_RS06075 at 1271.302 kb on + strand, within AMB_RS06075 at 1271.303 kb on - strand, within AMB_RS06075 at 1271.303 kb on - strand, within AMB_RS06075 at 1271.419 kb on - strand, within AMB_RS06075 at 1271.487 kb on + strand, within AMB_RS06075 at 1271.488 kb on - strand, within AMB_RS06075 at 1271.608 kb on + strand, within AMB_RS06075 at 1271.608 kb on + strand, within AMB_RS06075 at 1271.608 kb on + strand, within AMB_RS06075 at 1271.609 kb on - strand, within AMB_RS06075 at 1271.609 kb on - strand, within AMB_RS06075 at 1271.609 kb on - strand, within AMB_RS06075 at 1271.609 kb on - strand, within AMB_RS06075 at 1271.609 kb on - strand, within AMB_RS06075 at 1271.740 kb on + strand, within AMB_RS06075 at 1271.741 kb on - strand, within AMB_RS06075 at 1271.741 kb on - strand, within AMB_RS06075 at 1271.741 kb on - strand, within AMB_RS06075 at 1271.905 kb on + strand, within AMB_RS06075 at 1271.953 kb on - strand, within AMB_RS06075 at 1271.965 kb on + strand, within AMB_RS06075 at 1271.966 kb on - strand, within AMB_RS06075 at 1271.966 kb on - strand, within AMB_RS06075 at 1272.046 kb on + strand, within AMB_RS06075 at 1272.086 kb on - strand, within AMB_RS06075 at 1272.086 kb on - strand, within AMB_RS06075 at 1272.086 kb on - strand, within AMB_RS06075 at 1272.086 kb on - strand, within AMB_RS06075 at 1272.088 kb on + strand, within AMB_RS06075 at 1272.088 kb on + strand, within AMB_RS06075 at 1272.088 kb on + strand, within AMB_RS06075 at 1272.088 kb on + strand, within AMB_RS06075 at 1272.088 kb on + strand, within AMB_RS06075 at 1272.089 kb on - strand, within AMB_RS06075 at 1272.136 kb on + strand, within AMB_RS06075 at 1272.137 kb on - strand, within AMB_RS06075 at 1272.183 kb on + strand, within AMB_RS06075 at 1272.184 kb on - strand, within AMB_RS06075 at 1272.184 kb on - strand, within AMB_RS06075 at 1272.245 kb on - strand at 1272.280 kb on + strand at 1272.317 kb on - strand at 1272.317 kb on - strand at 1272.363 kb on - strand at 1272.456 kb on - strand at 1272.458 kb on + strand at 1272.458 kb on + strand at 1272.458 kb on + strand at 1272.459 kb on - strand at 1272.459 kb on - strand at 1272.459 kb on - strand at 1272.533 kb on + strand, within AMB_RS06080 at 1272.533 kb on + strand, within AMB_RS06080 at 1272.533 kb on + strand, within AMB_RS06080 at 1272.534 kb on - strand, within AMB_RS06080 at 1272.534 kb on - strand, within AMB_RS06080 at 1272.534 kb on - strand, within AMB_RS06080 at 1272.818 kb on - strand at 1272.818 kb on - strand at 1272.830 kb on + strand at 1272.830 kb on + strand at 1272.830 kb on + strand at 1272.830 kb on + strand at 1272.831 kb on - strand at 1272.831 kb on - strand at 1272.919 kb on - strand at 1272.938 kb on + strand at 1272.939 kb on - strand at 1273.015 kb on - strand, within AMB_RS06085 at 1273.015 kb on - strand, within AMB_RS06085 at 1273.015 kb on - strand, within AMB_RS06085 at 1273.015 kb on - strand, within AMB_RS06085 at 1273.100 kb on + strand, within AMB_RS06085 at 1273.100 kb on + strand, within AMB_RS06085 at 1273.100 kb on + strand, within AMB_RS06085 at 1273.323 kb on + strand, within AMB_RS06090 at 1273.324 kb on - strand, within AMB_RS06090
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 1,269,927 - -0.4 1,270,243 + AMB_RS06070 0.32 +1.6 1,270,292 + AMB_RS06070 0.38 -3.2 1,270,292 + AMB_RS06070 0.38 -1.2 1,270,293 - AMB_RS06070 0.38 -1.4 1,270,293 - AMB_RS06070 0.38 -0.2 1,270,293 - AMB_RS06070 0.38 -0.0 1,270,437 - AMB_RS06070 0.54 -1.8 1,270,437 - AMB_RS06070 0.54 +0.6 1,270,437 - AMB_RS06070 0.54 -0.9 1,270,437 - AMB_RS06070 0.54 -1.1 1,270,506 + AMB_RS06070 0.62 -1.0 1,270,507 - AMB_RS06070 0.62 -2.0 1,270,987 + -0.4 1,270,987 + -0.8 1,270,987 + +0.0 1,270,987 + -1.4 1,270,987 + -0.6 1,270,987 + -0.6 1,270,987 + -0.1 1,270,987 + -1.2 1,270,987 + +0.0 1,270,987 + +0.3 1,270,988 - -0.5 1,270,988 - -1.4 1,270,988 - +0.3 1,270,988 - -1.9 1,270,988 - -1.0 1,270,988 - -1.6 1,270,990 + -0.1 1,270,990 + -0.1 1,270,990 + -0.8 1,270,990 + -2.4 1,270,991 - -0.4 1,270,991 - -1.6 1,270,991 - -0.2 1,271,057 + AMB_RS06075 0.14 -1.0 1,271,263 + AMB_RS06075 0.28 -0.7 1,271,264 - AMB_RS06075 0.28 -1.0 1,271,264 - AMB_RS06075 0.28 -1.6 1,271,264 - AMB_RS06075 0.28 -1.6 1,271,264 - AMB_RS06075 0.28 +0.6 1,271,302 + AMB_RS06075 0.31 -0.3 1,271,302 + AMB_RS06075 0.31 -1.6 1,271,302 + AMB_RS06075 0.31 -0.4 1,271,302 + AMB_RS06075 0.31 -0.4 1,271,302 + AMB_RS06075 0.31 -0.4 1,271,303 - AMB_RS06075 0.31 +1.6 1,271,303 - AMB_RS06075 0.31 -1.6 1,271,419 - AMB_RS06075 0.38 -1.6 1,271,487 + AMB_RS06075 0.43 +1.6 1,271,488 - AMB_RS06075 0.43 -1.3 1,271,608 + AMB_RS06075 0.51 -2.4 1,271,608 + AMB_RS06075 0.51 -2.1 1,271,608 + AMB_RS06075 0.51 -1.3 1,271,609 - AMB_RS06075 0.51 -1.0 1,271,609 - AMB_RS06075 0.51 -0.8 1,271,609 - AMB_RS06075 0.51 -0.9 1,271,609 - AMB_RS06075 0.51 -0.8 1,271,609 - AMB_RS06075 0.51 -0.5 1,271,740 + AMB_RS06075 0.60 -2.1 1,271,741 - AMB_RS06075 0.60 -0.4 1,271,741 - AMB_RS06075 0.60 +0.2 1,271,741 - AMB_RS06075 0.60 -2.4 1,271,905 + AMB_RS06075 0.71 -1.6 1,271,953 - AMB_RS06075 0.74 -0.4 1,271,965 + AMB_RS06075 0.75 -0.8 1,271,966 - AMB_RS06075 0.75 +1.1 1,271,966 - AMB_RS06075 0.75 -5.0 1,272,046 + AMB_RS06075 0.80 -1.4 1,272,086 - AMB_RS06075 0.83 +0.5 1,272,086 - AMB_RS06075 0.83 -0.2 1,272,086 - AMB_RS06075 0.83 -1.9 1,272,086 - AMB_RS06075 0.83 -1.8 1,272,088 + AMB_RS06075 0.83 -1.0 1,272,088 + AMB_RS06075 0.83 -1.0 1,272,088 + AMB_RS06075 0.83 -0.2 1,272,088 + AMB_RS06075 0.83 +1.6 1,272,088 + AMB_RS06075 0.83 -0.4 1,272,089 - AMB_RS06075 0.83 -3.1 1,272,136 + AMB_RS06075 0.86 -2.4 1,272,137 - AMB_RS06075 0.86 -0.8 1,272,183 + AMB_RS06075 0.90 -0.2 1,272,184 - AMB_RS06075 0.90 -1.9 1,272,184 - AMB_RS06075 0.90 -1.0 1,272,245 - -3.2 1,272,280 + -0.8 1,272,317 - -0.0 1,272,317 - -0.6 1,272,363 - -1.9 1,272,456 - -0.1 1,272,458 + -2.1 1,272,458 + -2.4 1,272,458 + -1.4 1,272,459 - +1.7 1,272,459 - -1.6 1,272,459 - -1.1 1,272,533 + AMB_RS06080 0.15 -0.4 1,272,533 + AMB_RS06080 0.15 -0.4 1,272,533 + AMB_RS06080 0.15 -0.7 1,272,534 - AMB_RS06080 0.16 -0.2 1,272,534 - AMB_RS06080 0.16 -2.1 1,272,534 - AMB_RS06080 0.16 -1.3 1,272,818 - +1.0 1,272,818 - -0.2 1,272,830 + -0.6 1,272,830 + -0.0 1,272,830 + +1.6 1,272,830 + -0.0 1,272,831 - -0.7 1,272,831 - -1.0 1,272,919 - -0.0 1,272,938 + -2.0 1,272,939 - -1.5 1,273,015 - AMB_RS06085 0.35 +0.2 1,273,015 - AMB_RS06085 0.35 -2.1 1,273,015 - AMB_RS06085 0.35 -0.4 1,273,015 - AMB_RS06085 0.35 -1.0 1,273,100 + AMB_RS06085 0.66 +0.7 1,273,100 + AMB_RS06085 0.66 +0.6 1,273,100 + AMB_RS06085 0.66 +0.2 1,273,323 + AMB_RS06090 0.30 -2.8 1,273,324 - AMB_RS06090 0.30 -0.4
Or see this region's nucleotide sequence