Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06035

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06025 and AMB_RS06030 are separated by 2 nucleotidesAMB_RS06030 and AMB_RS06035 are separated by 29 nucleotidesAMB_RS06035 and AMB_RS06040 overlap by 8 nucleotidesAMB_RS06040 and AMB_RS06045 are separated by 67 nucleotidesAMB_RS06045 and AMB_RS06050 overlap by 4 nucleotides AMB_RS06025: AMB_RS06025 - hypothetical protein, at 1,262,259 to 1,263,602 _RS06025 AMB_RS06030: AMB_RS06030 - hypothetical protein, at 1,263,605 to 1,264,042 _RS06030 AMB_RS06035: AMB_RS06035 - hypothetical protein, at 1,264,072 to 1,264,422 _RS06035 AMB_RS06040: AMB_RS06040 - DUF1833 domain-containing protein, at 1,264,415 to 1,264,939 _RS06040 AMB_RS06045: AMB_RS06045 - hypothetical protein, at 1,265,007 to 1,265,402 _RS06045 AMB_RS06050: AMB_RS06050 - hypothetical protein, at 1,265,399 to 1,267,726 _RS06050 Position (kb) 1264 1265Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1263.095 kb on - strand, within AMB_RS06025at 1263.114 kb on + strand, within AMB_RS06025at 1263.114 kb on + strand, within AMB_RS06025at 1263.115 kb on - strand, within AMB_RS06025at 1263.115 kb on - strand, within AMB_RS06025at 1263.159 kb on - strand, within AMB_RS06025at 1263.199 kb on - strand, within AMB_RS06025at 1263.199 kb on - strand, within AMB_RS06025at 1263.199 kb on - strand, within AMB_RS06025at 1263.258 kb on + strand, within AMB_RS06025at 1263.279 kb on + strand, within AMB_RS06025at 1263.279 kb on + strand, within AMB_RS06025at 1263.282 kb on + strand, within AMB_RS06025at 1263.282 kb on + strand, within AMB_RS06025at 1263.282 kb on + strand, within AMB_RS06025at 1263.288 kb on + strand, within AMB_RS06025at 1263.337 kb on - strand, within AMB_RS06025at 1263.337 kb on - strand, within AMB_RS06025at 1263.351 kb on + strand, within AMB_RS06025at 1263.415 kb on - strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.535 kb on - strandat 1263.668 kb on + strand, within AMB_RS06030at 1263.669 kb on - strand, within AMB_RS06030at 1263.737 kb on + strand, within AMB_RS06030at 1263.944 kb on + strand, within AMB_RS06030at 1263.944 kb on + strand, within AMB_RS06030at 1263.944 kb on + strand, within AMB_RS06030at 1263.945 kb on - strand, within AMB_RS06030at 1264.041 kb on - strandat 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.410 kb on + strandat 1264.490 kb on - strand, within AMB_RS06040at 1264.792 kb on + strand, within AMB_RS06040at 1264.904 kb on + strandat 1264.904 kb on + strandat 1264.904 kb on + strandat 1264.904 kb on + strandat 1264.905 kb on - strandat 1264.905 kb on - strandat 1264.905 kb on - strandat 1264.906 kb on + strandat 1265.025 kb on + strandat 1265.025 kb on + strandat 1265.025 kb on + strandat 1265.027 kb on + strandat 1265.219 kb on + strand, within AMB_RS06045at 1265.385 kb on + strandat 1265.385 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,263,095 - AMB_RS06025 0.62 -1.8
1,263,114 + AMB_RS06025 0.64 -3.4
1,263,114 + AMB_RS06025 0.64 -1.0
1,263,115 - AMB_RS06025 0.64 -0.6
1,263,115 - AMB_RS06025 0.64 -0.6
1,263,159 - AMB_RS06025 0.67 +0.6
1,263,199 - AMB_RS06025 0.70 -2.0
1,263,199 - AMB_RS06025 0.70 +0.6
1,263,199 - AMB_RS06025 0.70 -1.4
1,263,258 + AMB_RS06025 0.74 +0.8
1,263,279 + AMB_RS06025 0.76 -4.3
1,263,279 + AMB_RS06025 0.76 -0.4
1,263,282 + AMB_RS06025 0.76 -0.9
1,263,282 + AMB_RS06025 0.76 -2.1
1,263,282 + AMB_RS06025 0.76 -1.1
1,263,288 + AMB_RS06025 0.77 -0.9
1,263,337 - AMB_RS06025 0.80 -0.4
1,263,337 - AMB_RS06025 0.80 -0.9
1,263,351 + AMB_RS06025 0.81 -0.4
1,263,415 - AMB_RS06025 0.86 -0.3
1,263,447 + AMB_RS06025 0.88 -0.4
1,263,447 + AMB_RS06025 0.88 -0.2
1,263,447 + AMB_RS06025 0.88 +0.4
1,263,447 + AMB_RS06025 0.88 +1.1
1,263,447 + AMB_RS06025 0.88 +0.6
1,263,447 + AMB_RS06025 0.88 -0.3
1,263,447 + AMB_RS06025 0.88 -1.9
1,263,447 + AMB_RS06025 0.88 -1.0
1,263,447 + AMB_RS06025 0.88 +0.3
1,263,447 + AMB_RS06025 0.88 +0.1
1,263,447 + AMB_RS06025 0.88 -1.2
1,263,447 + AMB_RS06025 0.88 +0.1
1,263,447 + AMB_RS06025 0.88 -1.5
1,263,448 - AMB_RS06025 0.88 +0.5
1,263,448 - AMB_RS06025 0.88 -2.0
1,263,448 - AMB_RS06025 0.88 +0.6
1,263,448 - AMB_RS06025 0.88 -1.0
1,263,448 - AMB_RS06025 0.88 +1.6
1,263,448 - AMB_RS06025 0.88 -0.4
1,263,448 - AMB_RS06025 0.88 -2.2
1,263,448 - AMB_RS06025 0.88 -0.3
1,263,448 - AMB_RS06025 0.88 -0.9
1,263,448 - AMB_RS06025 0.88 +0.9
1,263,448 - AMB_RS06025 0.88 -0.0
1,263,448 - AMB_RS06025 0.88 -0.9
1,263,448 - AMB_RS06025 0.88 -3.1
1,263,448 - AMB_RS06025 0.88 +0.4
1,263,448 - AMB_RS06025 0.88 +0.4
1,263,449 + AMB_RS06025 0.89 -2.3
1,263,449 + AMB_RS06025 0.89 -3.8
1,263,449 + AMB_RS06025 0.89 +0.2
1,263,449 + AMB_RS06025 0.89 +0.3
1,263,449 + AMB_RS06025 0.89 -2.1
1,263,449 + AMB_RS06025 0.89 +1.6
1,263,450 - AMB_RS06025 0.89 -1.4
1,263,450 - AMB_RS06025 0.89 -2.4
1,263,450 - AMB_RS06025 0.89 +0.6
1,263,450 - AMB_RS06025 0.89 -1.0
1,263,450 - AMB_RS06025 0.89 -1.8
1,263,450 - AMB_RS06025 0.89 -2.2
1,263,450 - AMB_RS06025 0.89 -1.8
1,263,450 - AMB_RS06025 0.89 -0.4
1,263,450 - AMB_RS06025 0.89 -2.3
1,263,450 - AMB_RS06025 0.89 -0.4
1,263,535 - -0.0
1,263,668 + AMB_RS06030 0.14 +0.6
1,263,669 - AMB_RS06030 0.15 -0.4
1,263,737 + AMB_RS06030 0.30 -1.8
1,263,944 + AMB_RS06030 0.77 -0.0
1,263,944 + AMB_RS06030 0.77 -0.4
1,263,944 + AMB_RS06030 0.77 -2.0
1,263,945 - AMB_RS06030 0.78 -0.6
1,264,041 - -2.1
1,264,117 + AMB_RS06035 0.13 +0.4
1,264,117 + AMB_RS06035 0.13 -0.3
1,264,117 + AMB_RS06035 0.13 +0.2
1,264,117 + AMB_RS06035 0.13 -4.1
1,264,117 + AMB_RS06035 0.13 +0.1
1,264,117 + AMB_RS06035 0.13 -1.2
1,264,410 + -0.4
1,264,490 - AMB_RS06040 0.14 -1.4
1,264,792 + AMB_RS06040 0.72 -0.4
1,264,904 + +1.7
1,264,904 + -0.8
1,264,904 + +1.6
1,264,904 + +0.1
1,264,905 - -0.8
1,264,905 - -2.0
1,264,905 - -0.4
1,264,906 + +1.6
1,265,025 + -0.4
1,265,025 + -0.6
1,265,025 + -0.8
1,265,027 + -0.3
1,265,219 + AMB_RS06045 0.54 +0.8
1,265,385 + -3.0
1,265,385 + -1.0

Or see this region's nucleotide sequence