Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05995

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05980 and AMB_RS05985 are separated by 2 nucleotidesAMB_RS05985 and AMB_RS05990 are separated by 26 nucleotidesAMB_RS05990 and AMB_RS05995 are separated by 15 nucleotidesAMB_RS05995 and AMB_RS06000 are separated by 10 nucleotides AMB_RS05980: AMB_RS05980 - hypothetical protein, at 1,253,928 to 1,254,887 _RS05980 AMB_RS05985: AMB_RS05985 - hypothetical protein, at 1,254,890 to 1,255,405 _RS05985 AMB_RS05990: AMB_RS05990 - hypothetical protein, at 1,255,432 to 1,255,617 _RS05990 AMB_RS05995: AMB_RS05995 - hypothetical protein, at 1,255,633 to 1,256,607 _RS05995 AMB_RS06000: AMB_RS06000 - replication protein, at 1,256,618 to 1,259,608 _RS06000 Position (kb) 1255 1256 1257Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1255.531 kb on + strand, within AMB_RS05990at 1255.531 kb on + strand, within AMB_RS05990at 1255.532 kb on - strand, within AMB_RS05990at 1255.768 kb on + strand, within AMB_RS05995at 1255.768 kb on + strand, within AMB_RS05995at 1255.769 kb on - strand, within AMB_RS05995at 1255.769 kb on - strand, within AMB_RS05995at 1255.769 kb on - strand, within AMB_RS05995at 1255.780 kb on + strand, within AMB_RS05995at 1255.780 kb on + strand, within AMB_RS05995at 1255.781 kb on - strand, within AMB_RS05995at 1256.272 kb on + strand, within AMB_RS05995at 1256.272 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.369 kb on - strand, within AMB_RS05995at 1256.369 kb on - strand, within AMB_RS05995at 1256.369 kb on - strand, within AMB_RS05995at 1256.548 kb on + strandat 1256.549 kb on - strandat 1256.955 kb on + strand, within AMB_RS06000at 1256.956 kb on - strand, within AMB_RS06000at 1256.956 kb on - strand, within AMB_RS06000at 1256.990 kb on + strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.996 kb on + strand, within AMB_RS06000at 1256.996 kb on + strand, within AMB_RS06000at 1257.048 kb on - strand, within AMB_RS06000at 1257.088 kb on + strand, within AMB_RS06000at 1257.322 kb on + strand, within AMB_RS06000at 1257.451 kb on + strand, within AMB_RS06000at 1257.451 kb on + strand, within AMB_RS06000

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,255,531 + AMB_RS05990 0.53 -1.2
1,255,531 + AMB_RS05990 0.53 +0.4
1,255,532 - AMB_RS05990 0.54 -2.3
1,255,768 + AMB_RS05995 0.14 -1.4
1,255,768 + AMB_RS05995 0.14 -0.4
1,255,769 - AMB_RS05995 0.14 +0.3
1,255,769 - AMB_RS05995 0.14 -0.7
1,255,769 - AMB_RS05995 0.14 -0.0
1,255,780 + AMB_RS05995 0.15 -1.3
1,255,780 + AMB_RS05995 0.15 -0.7
1,255,781 - AMB_RS05995 0.15 -1.0
1,256,272 + AMB_RS05995 0.66 -1.7
1,256,272 + AMB_RS05995 0.66 +0.2
1,256,368 + AMB_RS05995 0.75 -0.4
1,256,368 + AMB_RS05995 0.75 -0.0
1,256,368 + AMB_RS05995 0.75 +0.3
1,256,368 + AMB_RS05995 0.75 -2.7
1,256,368 + AMB_RS05995 0.75 -0.7
1,256,368 + AMB_RS05995 0.75 -0.9
1,256,368 + AMB_RS05995 0.75 -1.9
1,256,368 + AMB_RS05995 0.75 -0.5
1,256,369 - AMB_RS05995 0.75 -0.7
1,256,369 - AMB_RS05995 0.75 -0.2
1,256,369 - AMB_RS05995 0.75 -1.6
1,256,548 + -2.1
1,256,549 - -0.0
1,256,955 + AMB_RS06000 0.11 -2.6
1,256,956 - AMB_RS06000 0.11 +0.4
1,256,956 - AMB_RS06000 0.11 -0.4
1,256,990 + AMB_RS06000 0.12 +0.3
1,256,991 - AMB_RS06000 0.12 +1.1
1,256,991 - AMB_RS06000 0.12 -2.0
1,256,991 - AMB_RS06000 0.12 +0.3
1,256,991 - AMB_RS06000 0.12 -0.7
1,256,991 - AMB_RS06000 0.12 -1.0
1,256,991 - AMB_RS06000 0.12 -1.9
1,256,991 - AMB_RS06000 0.12 -0.7
1,256,991 - AMB_RS06000 0.12 -1.9
1,256,991 - AMB_RS06000 0.12 -0.2
1,256,991 - AMB_RS06000 0.12 -0.5
1,256,996 + AMB_RS06000 0.13 -2.5
1,256,996 + AMB_RS06000 0.13 -0.1
1,257,048 - AMB_RS06000 0.14 -1.1
1,257,088 + AMB_RS06000 0.16 -3.8
1,257,322 + AMB_RS06000 0.24 -1.0
1,257,451 + AMB_RS06000 0.28 +0.9
1,257,451 + AMB_RS06000 0.28 +0.8

Or see this region's nucleotide sequence