Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05875

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05865 and AMB_RS05870 are separated by 525 nucleotidesAMB_RS05870 and AMB_RS05875 overlap by 4 nucleotidesAMB_RS05875 and AMB_RS05880 are separated by 402 nucleotides AMB_RS05865: AMB_RS05865 - hypothetical protein, at 1,236,966 to 1,237,538 _RS05865 AMB_RS05870: AMB_RS05870 - hypothetical protein, at 1,238,064 to 1,238,534 _RS05870 AMB_RS05875: AMB_RS05875 - hypothetical protein, at 1,238,531 to 1,238,950 _RS05875 AMB_RS05880: AMB_RS05880 - DNA cytosine methyltransferase, at 1,239,353 to 1,241,215 _RS05880 Position (kb) 1238 1239Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1237.549 kb on - strandat 1237.549 kb on - strandat 1237.551 kb on - strandat 1237.588 kb on + strandat 1237.588 kb on + strandat 1237.589 kb on - strandat 1237.589 kb on - strandat 1237.745 kb on + strandat 1237.745 kb on + strandat 1237.746 kb on - strandat 1237.804 kb on + strandat 1237.961 kb on + strandat 1237.961 kb on + strandat 1237.961 kb on + strandat 1237.962 kb on - strandat 1237.962 kb on - strandat 1237.962 kb on - strandat 1238.015 kb on + strandat 1238.075 kb on + strandat 1238.076 kb on - strandat 1238.076 kb on - strandat 1238.172 kb on + strand, within AMB_RS05870at 1238.304 kb on + strand, within AMB_RS05870at 1238.304 kb on + strand, within AMB_RS05870at 1238.304 kb on + strand, within AMB_RS05870at 1238.304 kb on + strand, within AMB_RS05870at 1238.304 kb on + strand, within AMB_RS05870at 1238.304 kb on + strand, within AMB_RS05870at 1238.304 kb on + strand, within AMB_RS05870at 1238.305 kb on - strand, within AMB_RS05870at 1238.305 kb on - strand, within AMB_RS05870at 1238.305 kb on - strand, within AMB_RS05870at 1238.305 kb on - strand, within AMB_RS05870at 1238.305 kb on - strand, within AMB_RS05870at 1238.305 kb on - strand, within AMB_RS05870at 1238.305 kb on - strand, within AMB_RS05870at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.884 kb on - strand, within AMB_RS05875at 1238.970 kb on + strandat 1239.043 kb on + strandat 1239.044 kb on - strandat 1239.044 kb on - strandat 1239.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,237,549 - +0.4
1,237,549 - -2.2
1,237,551 - -1.2
1,237,588 + -2.2
1,237,588 + -0.7
1,237,589 - +0.4
1,237,589 - -1.2
1,237,745 + -2.6
1,237,745 + -1.0
1,237,746 - -1.4
1,237,804 + -0.2
1,237,961 + -1.9
1,237,961 + -2.1
1,237,961 + -0.1
1,237,962 - -1.6
1,237,962 - -0.2
1,237,962 - -2.1
1,238,015 + +0.2
1,238,075 + -1.6
1,238,076 - -0.4
1,238,076 - -0.4
1,238,172 + AMB_RS05870 0.23 -0.7
1,238,304 + AMB_RS05870 0.51 -1.0
1,238,304 + AMB_RS05870 0.51 +0.4
1,238,304 + AMB_RS05870 0.51 +0.7
1,238,304 + AMB_RS05870 0.51 -3.4
1,238,304 + AMB_RS05870 0.51 -0.3
1,238,304 + AMB_RS05870 0.51 -0.7
1,238,304 + AMB_RS05870 0.51 -1.2
1,238,305 - AMB_RS05870 0.51 -0.7
1,238,305 - AMB_RS05870 0.51 -1.0
1,238,305 - AMB_RS05870 0.51 -0.0
1,238,305 - AMB_RS05870 0.51 -1.1
1,238,305 - AMB_RS05870 0.51 -1.0
1,238,305 - AMB_RS05870 0.51 -0.0
1,238,305 - AMB_RS05870 0.51 -1.0
1,238,639 + AMB_RS05875 0.26 -0.7
1,238,639 + AMB_RS05875 0.26 +0.5
1,238,639 + AMB_RS05875 0.26 +0.3
1,238,639 + AMB_RS05875 0.26 -1.2
1,238,639 + AMB_RS05875 0.26 +0.5
1,238,639 + AMB_RS05875 0.26 -0.7
1,238,639 + AMB_RS05875 0.26 -1.3
1,238,639 + AMB_RS05875 0.26 -4.1
1,238,640 - AMB_RS05875 0.26 -0.4
1,238,640 - AMB_RS05875 0.26 -0.7
1,238,640 - AMB_RS05875 0.26 +1.2
1,238,640 - AMB_RS05875 0.26 -2.0
1,238,640 - AMB_RS05875 0.26 -1.0
1,238,640 - AMB_RS05875 0.26 +0.0
1,238,640 - AMB_RS05875 0.26 -0.0
1,238,640 - AMB_RS05875 0.26 -1.2
1,238,884 - AMB_RS05875 0.84 +0.2
1,238,970 + -2.1
1,239,043 + -3.5
1,239,044 - +0.3
1,239,044 - -0.2
1,239,422 + -1.0

Or see this region's nucleotide sequence