Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS05815 and AMB_RS05820 overlap by 7 nucleotides AMB_RS05820 and AMB_RS05825 overlap by 4 nucleotides AMB_RS05825 and AMB_RS05830 are separated by 92 nucleotides AMB_RS05830 and AMB_RS05835 are separated by 17 nucleotides AMB_RS05835 and AMB_RS05840 are separated by 17 nucleotides
AMB_RS05815: AMB_RS05815 - DNA-binding protein, at 1,229,667 to 1,229,918
_RS05815
AMB_RS05820: AMB_RS05820 - hypothetical protein, at 1,229,912 to 1,230,187
_RS05820
AMB_RS05825: AMB_RS05825 - hypothetical protein, at 1,230,184 to 1,230,663
_RS05825
AMB_RS05830: AMB_RS05830 - ATPase AAA, at 1,230,756 to 1,231,592
_RS05830
AMB_RS05835: AMB_RS05835 - hypothetical protein, at 1,231,610 to 1,232,353
_RS05835
AMB_RS05840: AMB_RS05840 - hypothetical protein, at 1,232,371 to 1,232,598
_RS05840
Position (kb) 1230
1231
1232 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1229.766 kb on + strand, within AMB_RS05815 at 1229.766 kb on + strand, within AMB_RS05815 at 1229.767 kb on - strand, within AMB_RS05815 at 1229.767 kb on - strand, within AMB_RS05815 at 1229.767 kb on - strand, within AMB_RS05815 at 1229.817 kb on + strand, within AMB_RS05815 at 1229.818 kb on - strand, within AMB_RS05815 at 1230.085 kb on - strand, within AMB_RS05820 at 1230.138 kb on - strand, within AMB_RS05820 at 1230.138 kb on - strand, within AMB_RS05820 at 1230.138 kb on - strand, within AMB_RS05820 at 1230.348 kb on + strand, within AMB_RS05825 at 1230.349 kb on - strand, within AMB_RS05825 at 1230.353 kb on - strand, within AMB_RS05825 at 1230.530 kb on - strand, within AMB_RS05825 at 1230.530 kb on - strand, within AMB_RS05825 at 1230.562 kb on - strand, within AMB_RS05825 at 1230.562 kb on - strand, within AMB_RS05825 at 1230.562 kb on - strand, within AMB_RS05825 at 1230.566 kb on - strand, within AMB_RS05825 at 1230.566 kb on - strand, within AMB_RS05825 at 1230.586 kb on - strand, within AMB_RS05825 at 1230.763 kb on + strand at 1230.890 kb on + strand, within AMB_RS05830 at 1230.891 kb on - strand, within AMB_RS05830 at 1231.027 kb on - strand, within AMB_RS05830 at 1231.027 kb on - strand, within AMB_RS05830 at 1231.062 kb on + strand, within AMB_RS05830 at 1231.062 kb on + strand, within AMB_RS05830 at 1231.063 kb on - strand, within AMB_RS05830 at 1231.063 kb on - strand, within AMB_RS05830 at 1231.063 kb on - strand, within AMB_RS05830 at 1231.063 kb on - strand, within AMB_RS05830 at 1231.216 kb on - strand, within AMB_RS05830 at 1231.237 kb on + strand, within AMB_RS05830 at 1231.238 kb on - strand, within AMB_RS05830 at 1231.238 kb on - strand, within AMB_RS05830 at 1231.403 kb on + strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.616 kb on + strand at 1231.616 kb on + strand at 1231.894 kb on + strand, within AMB_RS05835 at 1232.061 kb on - strand, within AMB_RS05835 at 1232.111 kb on + strand, within AMB_RS05835 at 1232.111 kb on + strand, within AMB_RS05835 at 1232.112 kb on - strand, within AMB_RS05835 at 1232.370 kb on + strand at 1232.370 kb on + strand at 1232.370 kb on + strand at 1232.371 kb on - strand at 1232.371 kb on - strand at 1232.371 kb on - strand at 1232.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 1,229,766 + AMB_RS05815 0.39 -1.6 1,229,766 + AMB_RS05815 0.39 -0.1 1,229,767 - AMB_RS05815 0.40 -0.0 1,229,767 - AMB_RS05815 0.40 +0.2 1,229,767 - AMB_RS05815 0.40 -0.8 1,229,817 + AMB_RS05815 0.60 -0.7 1,229,818 - AMB_RS05815 0.60 -3.3 1,230,085 - AMB_RS05820 0.63 -1.0 1,230,138 - AMB_RS05820 0.82 -3.1 1,230,138 - AMB_RS05820 0.82 -1.6 1,230,138 - AMB_RS05820 0.82 -3.4 1,230,348 + AMB_RS05825 0.34 -2.3 1,230,349 - AMB_RS05825 0.34 -4.9 1,230,353 - AMB_RS05825 0.35 -2.6 1,230,530 - AMB_RS05825 0.72 +0.6 1,230,530 - AMB_RS05825 0.72 +0.6 1,230,562 - AMB_RS05825 0.79 -1.4 1,230,562 - AMB_RS05825 0.79 +0.6 1,230,562 - AMB_RS05825 0.79 +0.9 1,230,566 - AMB_RS05825 0.80 +1.6 1,230,566 - AMB_RS05825 0.80 -0.4 1,230,586 - AMB_RS05825 0.84 +1.6 1,230,763 + -2.4 1,230,890 + AMB_RS05830 0.16 +2.3 1,230,891 - AMB_RS05830 0.16 -3.2 1,231,027 - AMB_RS05830 0.32 -0.7 1,231,027 - AMB_RS05830 0.32 -0.7 1,231,062 + AMB_RS05830 0.37 -0.5 1,231,062 + AMB_RS05830 0.37 -1.0 1,231,063 - AMB_RS05830 0.37 +0.2 1,231,063 - AMB_RS05830 0.37 -3.9 1,231,063 - AMB_RS05830 0.37 -2.5 1,231,063 - AMB_RS05830 0.37 -0.9 1,231,216 - AMB_RS05830 0.55 -0.2 1,231,237 + AMB_RS05830 0.57 -0.7 1,231,238 - AMB_RS05830 0.58 -0.4 1,231,238 - AMB_RS05830 0.58 -0.5 1,231,403 + AMB_RS05830 0.77 -0.4 1,231,404 - AMB_RS05830 0.77 -0.7 1,231,404 - AMB_RS05830 0.77 +0.6 1,231,404 - AMB_RS05830 0.77 -1.7 1,231,404 - AMB_RS05830 0.77 +1.6 1,231,404 - AMB_RS05830 0.77 +0.6 1,231,404 - AMB_RS05830 0.77 +0.6 1,231,616 + -1.6 1,231,616 + +0.6 1,231,894 + AMB_RS05835 0.38 -1.2 1,232,061 - AMB_RS05835 0.61 +0.9 1,232,111 + AMB_RS05835 0.67 +1.6 1,232,111 + AMB_RS05835 0.67 +0.1 1,232,112 - AMB_RS05835 0.67 -1.7 1,232,370 + -1.0 1,232,370 + -2.4 1,232,370 + -0.5 1,232,371 - -0.2 1,232,371 - -0.7 1,232,371 - -0.4 1,232,371 - -0.0
Or see this region's nucleotide sequence