Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05445

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05440 and AMB_RS05445 are separated by 154 nucleotidesAMB_RS05445 and AMB_RS23200 are separated by 16 nucleotidesAMB_RS23200 and AMB_RS05455 are separated by 180 nucleotides AMB_RS05440: AMB_RS05440 - hypothetical protein, at 1,126,525 to 1,127,946 _RS05440 AMB_RS05445: AMB_RS05445 - MBOAT family protein, at 1,128,101 to 1,129,525 _RS05445 AMB_RS23200: AMB_RS23200 - NUDIX hydrolase, at 1,129,542 to 1,130,246 _RS23200 AMB_RS05455: AMB_RS05455 - glycosyltransferase family 2 protein, at 1,130,427 to 1,131,452 _RS05455 Position (kb) 1128 1129 1130Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1127.134 kb on + strand, within AMB_RS05440at 1127.144 kb on + strand, within AMB_RS05440at 1127.145 kb on - strand, within AMB_RS05440at 1127.145 kb on - strand, within AMB_RS05440at 1127.162 kb on + strand, within AMB_RS05440at 1127.162 kb on + strand, within AMB_RS05440at 1127.162 kb on + strand, within AMB_RS05440at 1127.163 kb on - strand, within AMB_RS05440at 1127.163 kb on - strand, within AMB_RS05440at 1127.163 kb on - strand, within AMB_RS05440at 1127.173 kb on + strand, within AMB_RS05440at 1127.174 kb on - strand, within AMB_RS05440at 1127.485 kb on + strand, within AMB_RS05440at 1127.485 kb on + strand, within AMB_RS05440at 1127.485 kb on + strand, within AMB_RS05440at 1127.485 kb on + strand, within AMB_RS05440at 1127.485 kb on + strand, within AMB_RS05440at 1127.486 kb on - strand, within AMB_RS05440at 1127.486 kb on - strand, within AMB_RS05440at 1127.486 kb on - strand, within AMB_RS05440at 1127.486 kb on - strand, within AMB_RS05440at 1127.486 kb on - strand, within AMB_RS05440at 1127.528 kb on + strand, within AMB_RS05440at 1127.528 kb on + strand, within AMB_RS05440at 1127.529 kb on - strand, within AMB_RS05440at 1127.592 kb on - strand, within AMB_RS05440at 1127.601 kb on - strand, within AMB_RS05440at 1127.639 kb on - strand, within AMB_RS05440at 1127.639 kb on - strand, within AMB_RS05440at 1127.735 kb on + strand, within AMB_RS05440at 1127.735 kb on + strand, within AMB_RS05440at 1127.735 kb on + strand, within AMB_RS05440at 1127.735 kb on + strand, within AMB_RS05440at 1127.736 kb on - strand, within AMB_RS05440at 1127.736 kb on - strand, within AMB_RS05440at 1127.736 kb on - strand, within AMB_RS05440at 1127.786 kb on + strand, within AMB_RS05440at 1127.792 kb on + strand, within AMB_RS05440at 1127.793 kb on - strand, within AMB_RS05440at 1127.793 kb on - strand, within AMB_RS05440at 1127.799 kb on + strand, within AMB_RS05440at 1128.005 kb on + strandat 1128.005 kb on + strandat 1128.005 kb on + strandat 1128.005 kb on + strandat 1128.005 kb on + strandat 1128.006 kb on - strandat 1128.006 kb on - strandat 1128.006 kb on - strandat 1128.006 kb on - strandat 1128.114 kb on + strandat 1128.114 kb on + strandat 1128.114 kb on + strandat 1128.114 kb on + strandat 1128.115 kb on - strandat 1128.129 kb on + strandat 1128.129 kb on + strandat 1128.129 kb on + strandat 1128.129 kb on + strandat 1128.130 kb on - strandat 1128.130 kb on - strandat 1128.130 kb on - strandat 1128.130 kb on - strandat 1128.130 kb on - strandat 1128.185 kb on - strandat 1128.348 kb on + strand, within AMB_RS05445at 1128.349 kb on - strand, within AMB_RS05445at 1128.349 kb on - strand, within AMB_RS05445at 1128.349 kb on - strand, within AMB_RS05445at 1128.349 kb on - strand, within AMB_RS05445at 1128.495 kb on - strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.642 kb on + strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.711 kb on + strand, within AMB_RS05445at 1128.711 kb on + strand, within AMB_RS05445at 1128.799 kb on - strand, within AMB_RS05445at 1128.837 kb on + strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.920 kb on + strand, within AMB_RS05445at 1128.920 kb on + strand, within AMB_RS05445at 1128.921 kb on - strand, within AMB_RS05445at 1129.051 kb on + strand, within AMB_RS05445at 1129.051 kb on + strand, within AMB_RS05445at 1129.052 kb on - strand, within AMB_RS05445at 1129.052 kb on - strand, within AMB_RS05445at 1129.052 kb on - strand, within AMB_RS05445at 1129.052 kb on - strand, within AMB_RS05445at 1129.053 kb on + strand, within AMB_RS05445at 1129.053 kb on + strand, within AMB_RS05445at 1129.054 kb on - strand, within AMB_RS05445at 1129.054 kb on - strand, within AMB_RS05445at 1129.054 kb on - strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.102 kb on - strand, within AMB_RS05445at 1129.239 kb on + strand, within AMB_RS05445at 1129.239 kb on + strand, within AMB_RS05445at 1129.249 kb on - strand, within AMB_RS05445at 1129.249 kb on - strand, within AMB_RS05445at 1129.442 kb on - strandat 1129.739 kb on - strand, within AMB_RS23200at 1129.799 kb on + strand, within AMB_RS23200at 1130.089 kb on + strand, within AMB_RS23200at 1130.225 kb on + strandat 1130.226 kb on - strandat 1130.246 kb on + strandat 1130.246 kb on + strandat 1130.260 kb on + strandat 1130.260 kb on + strandat 1130.260 kb on + strandat 1130.261 kb on - strandat 1130.262 kb on + strandat 1130.262 kb on + strandat 1130.262 kb on + strandat 1130.262 kb on + strandat 1130.263 kb on - strandat 1130.285 kb on + strandat 1130.286 kb on - strandat 1130.286 kb on - strandat 1130.286 kb on - strandat 1130.316 kb on + strandat 1130.316 kb on + strandat 1130.413 kb on + strandat 1130.459 kb on + strandat 1130.459 kb on + strandat 1130.459 kb on + strandat 1130.460 kb on - strandat 1130.496 kb on + strandat 1130.496 kb on + strandat 1130.497 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,127,134 + AMB_RS05440 0.43 -0.7
1,127,144 + AMB_RS05440 0.44 -0.7
1,127,145 - AMB_RS05440 0.44 -0.6
1,127,145 - AMB_RS05440 0.44 -0.0
1,127,162 + AMB_RS05440 0.45 -0.7
1,127,162 + AMB_RS05440 0.45 -3.8
1,127,162 + AMB_RS05440 0.45 +0.6
1,127,163 - AMB_RS05440 0.45 +0.1
1,127,163 - AMB_RS05440 0.45 -0.7
1,127,163 - AMB_RS05440 0.45 -1.2
1,127,173 + AMB_RS05440 0.46 +0.8
1,127,174 - AMB_RS05440 0.46 -2.9
1,127,485 + AMB_RS05440 0.68 -1.4
1,127,485 + AMB_RS05440 0.68 -0.6
1,127,485 + AMB_RS05440 0.68 -0.5
1,127,485 + AMB_RS05440 0.68 -3.0
1,127,485 + AMB_RS05440 0.68 -2.3
1,127,486 - AMB_RS05440 0.68 -2.3
1,127,486 - AMB_RS05440 0.68 -0.4
1,127,486 - AMB_RS05440 0.68 +0.5
1,127,486 - AMB_RS05440 0.68 -0.9
1,127,486 - AMB_RS05440 0.68 -0.1
1,127,528 + AMB_RS05440 0.71 -0.8
1,127,528 + AMB_RS05440 0.71 +0.5
1,127,529 - AMB_RS05440 0.71 +0.6
1,127,592 - AMB_RS05440 0.75 -1.6
1,127,601 - AMB_RS05440 0.76 +0.0
1,127,639 - AMB_RS05440 0.78 +0.1
1,127,639 - AMB_RS05440 0.78 -2.8
1,127,735 + AMB_RS05440 0.85 +1.6
1,127,735 + AMB_RS05440 0.85 -1.2
1,127,735 + AMB_RS05440 0.85 -0.7
1,127,735 + AMB_RS05440 0.85 -1.4
1,127,736 - AMB_RS05440 0.85 -0.9
1,127,736 - AMB_RS05440 0.85 -0.5
1,127,736 - AMB_RS05440 0.85 +0.6
1,127,786 + AMB_RS05440 0.89 +0.3
1,127,792 + AMB_RS05440 0.89 -2.8
1,127,793 - AMB_RS05440 0.89 -0.6
1,127,793 - AMB_RS05440 0.89 -0.3
1,127,799 + AMB_RS05440 0.90 +1.6
1,128,005 + -2.9
1,128,005 + -0.4
1,128,005 + -1.9
1,128,005 + -1.4
1,128,005 + -1.4
1,128,006 - +1.6
1,128,006 - -0.8
1,128,006 - +0.8
1,128,006 - -0.1
1,128,114 + -0.6
1,128,114 + +0.4
1,128,114 + -0.7
1,128,114 + -1.3
1,128,115 - +0.0
1,128,129 + -1.5
1,128,129 + -2.0
1,128,129 + -1.0
1,128,129 + -1.4
1,128,130 - -0.4
1,128,130 - -2.2
1,128,130 - +0.1
1,128,130 - -4.5
1,128,130 - -1.4
1,128,185 - +1.6
1,128,348 + AMB_RS05445 0.17 -1.3
1,128,349 - AMB_RS05445 0.17 -1.0
1,128,349 - AMB_RS05445 0.17 +0.0
1,128,349 - AMB_RS05445 0.17 +0.3
1,128,349 - AMB_RS05445 0.17 -1.9
1,128,495 - AMB_RS05445 0.28 -0.1
1,128,636 + AMB_RS05445 0.38 -0.5
1,128,636 + AMB_RS05445 0.38 +0.0
1,128,636 + AMB_RS05445 0.38 -0.4
1,128,636 + AMB_RS05445 0.38 -1.6
1,128,636 + AMB_RS05445 0.38 +0.6
1,128,636 + AMB_RS05445 0.38 -0.7
1,128,636 + AMB_RS05445 0.38 -1.7
1,128,636 + AMB_RS05445 0.38 -2.0
1,128,636 + AMB_RS05445 0.38 +0.0
1,128,636 + AMB_RS05445 0.38 -0.5
1,128,636 + AMB_RS05445 0.38 -0.3
1,128,636 + AMB_RS05445 0.38 +0.0
1,128,636 + AMB_RS05445 0.38 -1.3
1,128,636 + AMB_RS05445 0.38 -0.9
1,128,637 - AMB_RS05445 0.38 -3.0
1,128,637 - AMB_RS05445 0.38 -0.6
1,128,637 - AMB_RS05445 0.38 +0.6
1,128,637 - AMB_RS05445 0.38 -0.1
1,128,637 - AMB_RS05445 0.38 -2.4
1,128,637 - AMB_RS05445 0.38 +1.6
1,128,637 - AMB_RS05445 0.38 -2.3
1,128,637 - AMB_RS05445 0.38 -1.0
1,128,637 - AMB_RS05445 0.38 -1.0
1,128,637 - AMB_RS05445 0.38 -1.7
1,128,642 + AMB_RS05445 0.38 +0.1
1,128,643 - AMB_RS05445 0.38 +0.5
1,128,643 - AMB_RS05445 0.38 -1.6
1,128,643 - AMB_RS05445 0.38 -0.1
1,128,643 - AMB_RS05445 0.38 +1.6
1,128,711 + AMB_RS05445 0.43 -1.0
1,128,711 + AMB_RS05445 0.43 +0.3
1,128,799 - AMB_RS05445 0.49 +0.0
1,128,837 + AMB_RS05445 0.52 -0.2
1,128,838 - AMB_RS05445 0.52 -0.4
1,128,838 - AMB_RS05445 0.52 -1.9
1,128,838 - AMB_RS05445 0.52 -3.3
1,128,838 - AMB_RS05445 0.52 -0.8
1,128,920 + AMB_RS05445 0.57 +1.6
1,128,920 + AMB_RS05445 0.57 -0.4
1,128,921 - AMB_RS05445 0.58 -0.4
1,129,051 + AMB_RS05445 0.67 +4.9
1,129,051 + AMB_RS05445 0.67 -0.5
1,129,052 - AMB_RS05445 0.67 -1.2
1,129,052 - AMB_RS05445 0.67 -2.7
1,129,052 - AMB_RS05445 0.67 -1.1
1,129,052 - AMB_RS05445 0.67 +0.4
1,129,053 + AMB_RS05445 0.67 -2.6
1,129,053 + AMB_RS05445 0.67 +0.2
1,129,054 - AMB_RS05445 0.67 -1.4
1,129,054 - AMB_RS05445 0.67 +1.6
1,129,054 - AMB_RS05445 0.67 -0.4
1,129,101 + AMB_RS05445 0.70 -2.1
1,129,101 + AMB_RS05445 0.70 -0.7
1,129,101 + AMB_RS05445 0.70 -0.4
1,129,101 + AMB_RS05445 0.70 -0.7
1,129,101 + AMB_RS05445 0.70 +1.6
1,129,101 + AMB_RS05445 0.70 +0.6
1,129,101 + AMB_RS05445 0.70 -0.5
1,129,102 - AMB_RS05445 0.70 -0.0
1,129,239 + AMB_RS05445 0.80 +1.6
1,129,239 + AMB_RS05445 0.80 +3.1
1,129,249 - AMB_RS05445 0.81 -2.9
1,129,249 - AMB_RS05445 0.81 -0.1
1,129,442 - -0.4
1,129,739 - AMB_RS23200 0.28 -0.3
1,129,799 + AMB_RS23200 0.36 +0.0
1,130,089 + AMB_RS23200 0.78 -0.8
1,130,225 + -0.4
1,130,226 - +0.0
1,130,246 + -1.1
1,130,246 + -3.5
1,130,260 + +0.6
1,130,260 + -1.6
1,130,260 + -0.6
1,130,261 - -0.8
1,130,262 + -0.1
1,130,262 + +0.0
1,130,262 + +0.1
1,130,262 + -2.1
1,130,263 - -1.6
1,130,285 + -2.9
1,130,286 - -0.1
1,130,286 - -0.5
1,130,286 - -0.4
1,130,316 + -2.6
1,130,316 + +0.6
1,130,413 + +0.6
1,130,459 + -1.0
1,130,459 + -1.5
1,130,459 + -0.2
1,130,460 - -0.7
1,130,496 + -2.2
1,130,496 + +0.3
1,130,497 - -0.7

Or see this region's nucleotide sequence