Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05275

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23975 and AMB_RS23980 are separated by 61 nucleotidesAMB_RS23980 and AMB_RS05275 are separated by 211 nucleotidesAMB_RS05275 and AMB_RS23700 are separated by 161 nucleotidesAMB_RS23700 and AMB_RS23705 are separated by 6 nucleotides AMB_RS23975: AMB_RS23975 - IS3 family transposase, at 1,093,602 to 1,093,869 _RS23975 AMB_RS23980: AMB_RS23980 - helix-turn-helix domain-containing protein, at 1,093,931 to 1,094,515 _RS23980 AMB_RS05275: AMB_RS05275 - IS3 family transposase, at 1,094,727 to 1,096,093 _RS05275 AMB_RS23700: AMB_RS23700 - hypothetical protein, at 1,096,255 to 1,096,629 _RS23700 AMB_RS23705: AMB_RS23705 - IS110 family transposase, at 1,096,636 to 1,096,863 _RS23705 Position (kb) 1094 1095 1096 1097Strain fitness (log2 ratio) -3 -2 -1 0 1at 1093.746 kb on - strand, within AMB_RS23975at 1093.763 kb on - strand, within AMB_RS23975at 1093.771 kb on + strand, within AMB_RS23975at 1093.771 kb on + strand, within AMB_RS23975at 1093.830 kb on + strand, within AMB_RS23975at 1093.831 kb on - strand, within AMB_RS23975at 1093.831 kb on - strand, within AMB_RS23975at 1093.916 kb on - strandat 1093.932 kb on + strandat 1094.093 kb on + strand, within AMB_RS23980at 1094.202 kb on - strand, within AMB_RS23980at 1094.275 kb on - strand, within AMB_RS23980at 1094.362 kb on - strand, within AMB_RS23980at 1094.405 kb on - strand, within AMB_RS23980at 1094.431 kb on + strand, within AMB_RS23980at 1094.431 kb on + strand, within AMB_RS23980at 1094.432 kb on - strand, within AMB_RS23980at 1094.868 kb on + strand, within AMB_RS05275at 1094.868 kb on + strand, within AMB_RS05275at 1094.868 kb on + strand, within AMB_RS05275at 1094.963 kb on + strand, within AMB_RS05275at 1094.963 kb on + strand, within AMB_RS05275at 1094.963 kb on + strand, within AMB_RS05275at 1094.963 kb on + strand, within AMB_RS05275at 1094.963 kb on + strand, within AMB_RS05275at 1094.963 kb on + strand, within AMB_RS05275at 1094.963 kb on + strand, within AMB_RS05275at 1094.963 kb on + strand, within AMB_RS05275at 1094.963 kb on + strand, within AMB_RS05275at 1095.069 kb on + strand, within AMB_RS05275at 1095.087 kb on + strand, within AMB_RS05275at 1095.088 kb on - strand, within AMB_RS05275at 1095.088 kb on - strand, within AMB_RS05275at 1095.088 kb on - strand, within AMB_RS05275at 1095.088 kb on - strand, within AMB_RS05275at 1095.230 kb on - strand, within AMB_RS05275at 1095.367 kb on + strand, within AMB_RS05275at 1095.367 kb on + strand, within AMB_RS05275at 1095.367 kb on + strand, within AMB_RS05275at 1095.367 kb on + strand, within AMB_RS05275at 1095.368 kb on - strand, within AMB_RS05275at 1095.368 kb on - strand, within AMB_RS05275at 1095.368 kb on - strand, within AMB_RS05275at 1095.689 kb on + strand, within AMB_RS05275at 1095.690 kb on - strand, within AMB_RS05275at 1095.690 kb on - strand, within AMB_RS05275at 1095.690 kb on - strand, within AMB_RS05275at 1095.722 kb on - strand, within AMB_RS05275at 1095.730 kb on + strand, within AMB_RS05275at 1095.734 kb on + strand, within AMB_RS05275at 1095.734 kb on + strand, within AMB_RS05275at 1095.734 kb on + strand, within AMB_RS05275at 1095.735 kb on - strand, within AMB_RS05275at 1095.881 kb on + strand, within AMB_RS05275at 1095.882 kb on - strand, within AMB_RS05275at 1096.891 kb on + strandat 1096.891 kb on + strandat 1096.891 kb on + strandat 1096.891 kb on + strandat 1096.891 kb on + strandat 1096.892 kb on - strandat 1096.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,093,746 - AMB_RS23975 0.54 -0.3
1,093,763 - AMB_RS23975 0.60 -1.7
1,093,771 + AMB_RS23975 0.63 +0.4
1,093,771 + AMB_RS23975 0.63 +1.1
1,093,830 + AMB_RS23975 0.85 -0.5
1,093,831 - AMB_RS23975 0.85 +0.6
1,093,831 - AMB_RS23975 0.85 -0.7
1,093,916 - -0.7
1,093,932 + +1.0
1,094,093 + AMB_RS23980 0.28 -3.1
1,094,202 - AMB_RS23980 0.46 -0.8
1,094,275 - AMB_RS23980 0.59 +0.6
1,094,362 - AMB_RS23980 0.74 -1.2
1,094,405 - AMB_RS23980 0.81 -0.3
1,094,431 + AMB_RS23980 0.85 -0.7
1,094,431 + AMB_RS23980 0.85 -0.3
1,094,432 - AMB_RS23980 0.86 -0.2
1,094,868 + AMB_RS05275 0.10 -0.2
1,094,868 + AMB_RS05275 0.10 +0.0
1,094,868 + AMB_RS05275 0.10 -1.6
1,094,963 + AMB_RS05275 0.17 -1.2
1,094,963 + AMB_RS05275 0.17 +0.6
1,094,963 + AMB_RS05275 0.17 +0.0
1,094,963 + AMB_RS05275 0.17 -1.0
1,094,963 + AMB_RS05275 0.17 -0.7
1,094,963 + AMB_RS05275 0.17 +0.6
1,094,963 + AMB_RS05275 0.17 -0.2
1,094,963 + AMB_RS05275 0.17 -0.4
1,094,963 + AMB_RS05275 0.17 +0.0
1,095,069 + AMB_RS05275 0.25 -1.6
1,095,087 + AMB_RS05275 0.26 -0.3
1,095,088 - AMB_RS05275 0.26 -1.6
1,095,088 - AMB_RS05275 0.26 -2.4
1,095,088 - AMB_RS05275 0.26 -1.2
1,095,088 - AMB_RS05275 0.26 -0.7
1,095,230 - AMB_RS05275 0.37 -0.7
1,095,367 + AMB_RS05275 0.47 -1.6
1,095,367 + AMB_RS05275 0.47 -0.5
1,095,367 + AMB_RS05275 0.47 +0.6
1,095,367 + AMB_RS05275 0.47 +1.0
1,095,368 - AMB_RS05275 0.47 -0.5
1,095,368 - AMB_RS05275 0.47 -1.0
1,095,368 - AMB_RS05275 0.47 +0.0
1,095,689 + AMB_RS05275 0.70 -0.4
1,095,690 - AMB_RS05275 0.70 +0.6
1,095,690 - AMB_RS05275 0.70 +0.6
1,095,690 - AMB_RS05275 0.70 -1.2
1,095,722 - AMB_RS05275 0.73 -1.2
1,095,730 + AMB_RS05275 0.73 -1.1
1,095,734 + AMB_RS05275 0.74 -1.6
1,095,734 + AMB_RS05275 0.74 -2.0
1,095,734 + AMB_RS05275 0.74 -0.5
1,095,735 - AMB_RS05275 0.74 -0.4
1,095,881 + AMB_RS05275 0.84 -1.2
1,095,882 - AMB_RS05275 0.84 -0.4
1,096,891 + +0.0
1,096,891 + -0.3
1,096,891 + -0.0
1,096,891 + -2.1
1,096,891 + +0.8
1,096,892 - -1.8
1,096,892 - -0.6

Or see this region's nucleotide sequence