Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04340 and AMB_RS04345 are separated by 11 nucleotides AMB_RS04345 and AMB_RS04350 are separated by 67 nucleotides AMB_RS04350 and AMB_RS04355 are separated by 188 nucleotides AMB_RS04355 and AMB_RS04360 are separated by 4 nucleotides
AMB_RS04340: AMB_RS04340 - enoyl-CoA hydratase, at 912,478 to 913,263
_RS04340
AMB_RS04345: AMB_RS04345 - anti-sigma factor antagonist, at 913,275 to 913,577
_RS04345
AMB_RS04350: AMB_RS04350 - HAMP domain-containing protein, at 913,645 to 915,693
_RS04350
AMB_RS04355: AMB_RS04355 - thiosulfate oxidation carrier complex protein SoxZ, at 915,882 to 916,211
_RS04355
AMB_RS04360: AMB_RS04360 - thiosulfate oxidation carrier protein SoxY, at 916,216 to 916,545
_RS04360
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 913.123 kb on + strand, within AMB_RS04340 at 913.123 kb on + strand, within AMB_RS04340 at 913.124 kb on - strand, within AMB_RS04340 at 913.124 kb on - strand, within AMB_RS04340 at 913.124 kb on - strand, within AMB_RS04340 at 913.156 kb on + strand, within AMB_RS04340 at 913.188 kb on + strand at 913.188 kb on + strand at 913.189 kb on - strand at 913.189 kb on - strand at 913.276 kb on + strand at 913.384 kb on + strand, within AMB_RS04345 at 913.384 kb on + strand, within AMB_RS04345 at 913.384 kb on + strand, within AMB_RS04345 at 913.384 kb on + strand, within AMB_RS04345 at 913.384 kb on + strand, within AMB_RS04345 at 913.384 kb on + strand, within AMB_RS04345 at 913.385 kb on - strand, within AMB_RS04345 at 913.385 kb on - strand, within AMB_RS04345 at 913.385 kb on - strand, within AMB_RS04345 at 913.385 kb on - strand, within AMB_RS04345 at 913.385 kb on - strand, within AMB_RS04345 at 913.385 kb on - strand, within AMB_RS04345 at 913.385 kb on - strand, within AMB_RS04345 at 913.385 kb on - strand, within AMB_RS04345 at 913.570 kb on + strand at 913.570 kb on + strand at 913.570 kb on + strand at 913.571 kb on - strand at 913.571 kb on - strand at 913.574 kb on - strand at 913.639 kb on + strand at 913.639 kb on + strand at 913.639 kb on + strand at 913.639 kb on + strand at 913.639 kb on + strand at 913.639 kb on + strand at 913.639 kb on + strand at 913.639 kb on + strand at 913.640 kb on - strand at 913.640 kb on - strand at 913.825 kb on + strand at 913.826 kb on - strand at 913.826 kb on - strand at 913.891 kb on + strand, within AMB_RS04350 at 913.891 kb on + strand, within AMB_RS04350 at 914.122 kb on + strand, within AMB_RS04350 at 914.122 kb on + strand, within AMB_RS04350 at 914.123 kb on - strand, within AMB_RS04350 at 914.626 kb on + strand, within AMB_RS04350 at 914.627 kb on - strand, within AMB_RS04350 at 914.627 kb on - strand, within AMB_RS04350 at 914.627 kb on - strand, within AMB_RS04350 at 914.627 kb on - strand, within AMB_RS04350 at 914.762 kb on + strand, within AMB_RS04350 at 914.762 kb on + strand, within AMB_RS04350 at 914.762 kb on + strand, within AMB_RS04350 at 914.762 kb on + strand, within AMB_RS04350 at 914.762 kb on + strand, within AMB_RS04350 at 914.762 kb on + strand, within AMB_RS04350 at 914.763 kb on - strand, within AMB_RS04350 at 914.763 kb on - strand, within AMB_RS04350 at 914.763 kb on - strand, within AMB_RS04350 at 914.763 kb on - strand, within AMB_RS04350 at 914.763 kb on - strand, within AMB_RS04350 at 914.833 kb on + strand, within AMB_RS04350 at 914.833 kb on + strand, within AMB_RS04350 at 914.833 kb on + strand, within AMB_RS04350 at 915.164 kb on + strand, within AMB_RS04350 at 915.164 kb on + strand, within AMB_RS04350 at 915.164 kb on + strand, within AMB_RS04350 at 915.164 kb on + strand, within AMB_RS04350 at 915.164 kb on + strand, within AMB_RS04350 at 915.164 kb on + strand, within AMB_RS04350 at 915.165 kb on - strand, within AMB_RS04350 at 915.165 kb on - strand, within AMB_RS04350 at 915.165 kb on - strand, within AMB_RS04350 at 915.165 kb on - strand, within AMB_RS04350 at 915.254 kb on + strand, within AMB_RS04350 at 915.254 kb on + strand, within AMB_RS04350 at 915.254 kb on + strand, within AMB_RS04350 at 915.254 kb on + strand, within AMB_RS04350 at 915.255 kb on - strand, within AMB_RS04350 at 915.255 kb on - strand, within AMB_RS04350 at 915.255 kb on - strand, within AMB_RS04350 at 915.257 kb on + strand, within AMB_RS04350 at 915.257 kb on + strand, within AMB_RS04350 at 915.258 kb on - strand, within AMB_RS04350 at 915.621 kb on - strand at 915.621 kb on - strand at 915.738 kb on + strand at 915.738 kb on + strand at 915.739 kb on - strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.795 kb on - strand at 915.796 kb on + strand at 915.797 kb on - strand at 915.825 kb on - strand at 915.883 kb on + strand at 915.906 kb on - strand at 915.907 kb on + strand at 915.907 kb on + strand at 915.908 kb on - strand at 916.367 kb on + strand, within AMB_RS04360 at 916.368 kb on - strand, within AMB_RS04360
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 913,123 + AMB_RS04340 0.82 -2.2 913,123 + AMB_RS04340 0.82 -1.1 913,124 - AMB_RS04340 0.82 -1.5 913,124 - AMB_RS04340 0.82 -1.0 913,124 - AMB_RS04340 0.82 -1.6 913,156 + AMB_RS04340 0.86 -2.1 913,188 + -0.5 913,188 + -0.8 913,189 - -0.9 913,189 - -1.8 913,276 + -2.1 913,384 + AMB_RS04345 0.36 +0.3 913,384 + AMB_RS04345 0.36 -3.1 913,384 + AMB_RS04345 0.36 -1.4 913,384 + AMB_RS04345 0.36 -2.5 913,384 + AMB_RS04345 0.36 +0.3 913,384 + AMB_RS04345 0.36 -2.1 913,385 - AMB_RS04345 0.36 +1.6 913,385 - AMB_RS04345 0.36 -0.7 913,385 - AMB_RS04345 0.36 -1.8 913,385 - AMB_RS04345 0.36 -0.4 913,385 - AMB_RS04345 0.36 -0.8 913,385 - AMB_RS04345 0.36 -1.2 913,385 - AMB_RS04345 0.36 -2.0 913,385 - AMB_RS04345 0.36 -0.2 913,570 + -0.8 913,570 + -2.7 913,570 + -1.0 913,571 - -0.7 913,571 - -2.5 913,574 - +0.0 913,639 + +0.4 913,639 + +0.1 913,639 + +0.0 913,639 + -0.9 913,639 + -1.7 913,639 + +0.0 913,639 + -2.0 913,639 + -1.0 913,640 - -2.4 913,640 - +0.6 913,825 + +0.0 913,826 - -2.2 913,826 - -1.0 913,891 + AMB_RS04350 0.12 -1.0 913,891 + AMB_RS04350 0.12 +0.0 914,122 + AMB_RS04350 0.23 +0.0 914,122 + AMB_RS04350 0.23 +0.5 914,123 - AMB_RS04350 0.23 -1.8 914,626 + AMB_RS04350 0.48 +0.0 914,627 - AMB_RS04350 0.48 +0.9 914,627 - AMB_RS04350 0.48 -0.1 914,627 - AMB_RS04350 0.48 +1.6 914,627 - AMB_RS04350 0.48 +0.6 914,762 + AMB_RS04350 0.55 -0.1 914,762 + AMB_RS04350 0.55 +0.6 914,762 + AMB_RS04350 0.55 -1.8 914,762 + AMB_RS04350 0.55 -0.1 914,762 + AMB_RS04350 0.55 -1.4 914,762 + AMB_RS04350 0.55 +0.3 914,763 - AMB_RS04350 0.55 -2.7 914,763 - AMB_RS04350 0.55 +1.1 914,763 - AMB_RS04350 0.55 -0.2 914,763 - AMB_RS04350 0.55 -0.3 914,763 - AMB_RS04350 0.55 -1.2 914,833 + AMB_RS04350 0.58 +0.6 914,833 + AMB_RS04350 0.58 -1.7 914,833 + AMB_RS04350 0.58 -1.4 915,164 + AMB_RS04350 0.74 -0.4 915,164 + AMB_RS04350 0.74 +0.6 915,164 + AMB_RS04350 0.74 +0.2 915,164 + AMB_RS04350 0.74 -0.6 915,164 + AMB_RS04350 0.74 -0.5 915,164 + AMB_RS04350 0.74 +0.9 915,165 - AMB_RS04350 0.74 -1.8 915,165 - AMB_RS04350 0.74 +0.0 915,165 - AMB_RS04350 0.74 -0.2 915,165 - AMB_RS04350 0.74 -0.8 915,254 + AMB_RS04350 0.79 -0.1 915,254 + AMB_RS04350 0.79 -0.4 915,254 + AMB_RS04350 0.79 -0.3 915,254 + AMB_RS04350 0.79 -0.2 915,255 - AMB_RS04350 0.79 +0.6 915,255 - AMB_RS04350 0.79 -0.7 915,255 - AMB_RS04350 0.79 -2.4 915,257 + AMB_RS04350 0.79 +0.0 915,257 + AMB_RS04350 0.79 -2.4 915,258 - AMB_RS04350 0.79 -1.2 915,621 - -0.2 915,621 - -0.3 915,738 + -1.0 915,738 + -1.5 915,739 - -0.1 915,794 + +0.0 915,794 + -1.4 915,794 + -1.7 915,794 + -1.0 915,794 + -2.4 915,795 - -0.7 915,796 + -2.9 915,797 - -1.4 915,825 - -1.0 915,883 + -0.7 915,906 - -2.5 915,907 + -1.7 915,907 + -0.4 915,908 - -1.8 916,367 + AMB_RS04360 0.46 +0.6 916,368 - AMB_RS04360 0.46 -0.3
Or see this region's nucleotide sequence