Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04125

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04115 and AMB_RS04120 are separated by 5 nucleotidesAMB_RS04120 and AMB_RS04125 overlap by 4 nucleotidesAMB_RS04125 and AMB_RS04130 are separated by 18 nucleotides AMB_RS04115: AMB_RS04115 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 862,501 to 863,958 _RS04115 AMB_RS04120: AMB_RS04120 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 863,964 to 864,728 _RS04120 AMB_RS04125: AMB_RS04125 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase, at 864,725 to 865,501 _RS04125 AMB_RS04130: AMB_RS04130 - TRAP transporter large permease, at 865,520 to 866,848 _RS04130 Position (kb) 864 865 866Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 863.980 kb on + strandat 863.980 kb on + strandat 863.981 kb on - strandat 863.981 kb on - strandat 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.131 kb on + strand, within AMB_RS04120at 864.131 kb on - strand, within AMB_RS04120at 864.131 kb on - strand, within AMB_RS04120at 864.234 kb on + strand, within AMB_RS04120at 864.235 kb on - strand, within AMB_RS04120at 864.310 kb on + strand, within AMB_RS04120at 864.313 kb on + strand, within AMB_RS04120at 864.313 kb on + strand, within AMB_RS04120at 864.313 kb on + strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.341 kb on - strand, within AMB_RS04120at 864.341 kb on - strand, within AMB_RS04120at 864.358 kb on + strand, within AMB_RS04120at 864.358 kb on + strand, within AMB_RS04120at 864.358 kb on + strand, within AMB_RS04120at 864.359 kb on - strand, within AMB_RS04120at 864.359 kb on - strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.377 kb on - strand, within AMB_RS04120at 864.440 kb on - strand, within AMB_RS04120at 864.440 kb on - strand, within AMB_RS04120at 864.440 kb on - strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.705 kb on - strandat 864.706 kb on + strandat 864.707 kb on - strandat 864.906 kb on + strand, within AMB_RS04125at 864.907 kb on - strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 865.063 kb on - strand, within AMB_RS04125at 865.260 kb on + strand, within AMB_RS04125at 865.261 kb on - strand, within AMB_RS04125at 865.261 kb on - strand, within AMB_RS04125at 865.261 kb on - strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.356 kb on + strand, within AMB_RS04125at 865.357 kb on - strand, within AMB_RS04125at 865.357 kb on - strand, within AMB_RS04125at 865.665 kb on + strand, within AMB_RS04130at 865.665 kb on + strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.764 kb on + strand, within AMB_RS04130at 865.765 kb on - strand, within AMB_RS04130at 865.765 kb on - strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 866.018 kb on + strand, within AMB_RS04130at 866.018 kb on + strand, within AMB_RS04130at 866.127 kb on + strand, within AMB_RS04130at 866.127 kb on + strand, within AMB_RS04130at 866.127 kb on + strand, within AMB_RS04130at 866.127 kb on + strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.270 kb on - strand, within AMB_RS04130at 866.271 kb on + strand, within AMB_RS04130at 866.271 kb on + strand, within AMB_RS04130at 866.271 kb on + strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.349 kb on + strand, within AMB_RS04130at 866.349 kb on + strand, within AMB_RS04130at 866.350 kb on - strand, within AMB_RS04130at 866.350 kb on - strand, within AMB_RS04130at 866.350 kb on - strand, within AMB_RS04130at 866.433 kb on + strand, within AMB_RS04130at 866.433 kb on + strand, within AMB_RS04130at 866.433 kb on + strand, within AMB_RS04130at 866.434 kb on - strand, within AMB_RS04130

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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863,980 + -0.4
863,980 + +0.6
863,981 - +0.1
863,981 - +0.3
864,130 + AMB_RS04120 0.22 -1.5
864,130 + AMB_RS04120 0.22 +0.1
864,130 + AMB_RS04120 0.22 +1.3
864,130 + AMB_RS04120 0.22 +0.7
864,130 + AMB_RS04120 0.22 -0.0
864,130 + AMB_RS04120 0.22 -0.7
864,131 + AMB_RS04120 0.22 -3.6
864,131 - AMB_RS04120 0.22 -1.4
864,131 - AMB_RS04120 0.22 +0.1
864,234 + AMB_RS04120 0.35 -0.3
864,235 - AMB_RS04120 0.35 +0.6
864,310 + AMB_RS04120 0.45 -0.6
864,313 + AMB_RS04120 0.46 -0.6
864,313 + AMB_RS04120 0.46 -0.4
864,313 + AMB_RS04120 0.46 +0.1
864,314 - AMB_RS04120 0.46 -0.3
864,314 - AMB_RS04120 0.46 -1.3
864,314 - AMB_RS04120 0.46 -1.2
864,314 - AMB_RS04120 0.46 -0.2
864,341 - AMB_RS04120 0.49 -0.6
864,341 - AMB_RS04120 0.49 +0.1
864,358 + AMB_RS04120 0.52 +0.6
864,358 + AMB_RS04120 0.52 +0.6
864,358 + AMB_RS04120 0.52 -0.9
864,359 - AMB_RS04120 0.52 +1.6
864,359 - AMB_RS04120 0.52 -2.3
864,376 + AMB_RS04120 0.54 -1.2
864,376 + AMB_RS04120 0.54 -0.5
864,376 + AMB_RS04120 0.54 -2.2
864,376 + AMB_RS04120 0.54 +0.3
864,376 + AMB_RS04120 0.54 -0.4
864,377 - AMB_RS04120 0.54 +0.7
864,440 - AMB_RS04120 0.62 -0.3
864,440 - AMB_RS04120 0.62 +0.5
864,440 - AMB_RS04120 0.62 -1.2
864,568 + AMB_RS04120 0.79 +4.4
864,568 + AMB_RS04120 0.79 -0.7
864,568 + AMB_RS04120 0.79 +0.0
864,569 - AMB_RS04120 0.79 -0.6
864,569 - AMB_RS04120 0.79 +0.0
864,569 - AMB_RS04120 0.79 -0.2
864,569 - AMB_RS04120 0.79 -0.4
864,705 - -1.1
864,706 + -0.9
864,707 - +0.2
864,906 + AMB_RS04125 0.23 -0.7
864,907 - AMB_RS04125 0.23 -1.7
864,951 + AMB_RS04125 0.29 -1.8
864,951 + AMB_RS04125 0.29 -0.1
864,951 + AMB_RS04125 0.29 -0.9
864,951 + AMB_RS04125 0.29 -0.5
864,951 + AMB_RS04125 0.29 -0.4
864,952 - AMB_RS04125 0.29 +0.2
864,952 - AMB_RS04125 0.29 +0.2
864,952 - AMB_RS04125 0.29 -0.6
864,952 - AMB_RS04125 0.29 -0.4
864,952 - AMB_RS04125 0.29 -0.8
865,063 - AMB_RS04125 0.44 -0.6
865,260 + AMB_RS04125 0.69 -1.3
865,261 - AMB_RS04125 0.69 -1.5
865,261 - AMB_RS04125 0.69 -1.8
865,261 - AMB_RS04125 0.69 +4.9
865,290 + AMB_RS04125 0.73 -1.2
865,290 + AMB_RS04125 0.73 +0.3
865,290 + AMB_RS04125 0.73 +0.1
865,290 + AMB_RS04125 0.73 -0.7
865,290 + AMB_RS04125 0.73 -1.5
865,356 + AMB_RS04125 0.81 -0.4
865,357 - AMB_RS04125 0.81 +1.0
865,357 - AMB_RS04125 0.81 -1.8
865,665 + AMB_RS04130 0.11 +0.2
865,665 + AMB_RS04130 0.11 +0.4
865,666 - AMB_RS04130 0.11 +0.6
865,666 - AMB_RS04130 0.11 +0.1
865,666 - AMB_RS04130 0.11 +0.6
865,666 - AMB_RS04130 0.11 -1.2
865,764 + AMB_RS04130 0.18 -0.4
865,765 - AMB_RS04130 0.18 -0.4
865,765 - AMB_RS04130 0.18 +0.1
865,854 + AMB_RS04130 0.25 -1.5
865,854 + AMB_RS04130 0.25 +1.6
865,854 + AMB_RS04130 0.25 +0.2
865,854 + AMB_RS04130 0.25 -0.2
865,854 + AMB_RS04130 0.25 -1.1
865,854 + AMB_RS04130 0.25 +0.1
865,854 + AMB_RS04130 0.25 -1.8
865,854 + AMB_RS04130 0.25 -2.1
865,854 + AMB_RS04130 0.25 +0.4
865,854 + AMB_RS04130 0.25 +0.6
865,854 + AMB_RS04130 0.25 -0.5
865,854 + AMB_RS04130 0.25 -0.5
865,854 + AMB_RS04130 0.25 -2.7
865,854 + AMB_RS04130 0.25 -0.7
865,855 - AMB_RS04130 0.25 -2.8
865,855 - AMB_RS04130 0.25 -0.4
865,855 - AMB_RS04130 0.25 -3.8
865,855 - AMB_RS04130 0.25 -0.7
865,855 - AMB_RS04130 0.25 -0.8
865,855 - AMB_RS04130 0.25 -1.1
866,018 + AMB_RS04130 0.37 -0.4
866,018 + AMB_RS04130 0.37 -2.2
866,127 + AMB_RS04130 0.46 -0.4
866,127 + AMB_RS04130 0.46 -2.5
866,127 + AMB_RS04130 0.46 -1.6
866,127 + AMB_RS04130 0.46 -0.9
866,128 - AMB_RS04130 0.46 +1.6
866,128 - AMB_RS04130 0.46 -3.1
866,128 - AMB_RS04130 0.46 +0.2
866,128 - AMB_RS04130 0.46 -2.5
866,128 - AMB_RS04130 0.46 +0.7
866,128 - AMB_RS04130 0.46 -2.1
866,128 - AMB_RS04130 0.46 +0.8
866,128 - AMB_RS04130 0.46 -2.8
866,128 - AMB_RS04130 0.46 +0.1
866,128 - AMB_RS04130 0.46 +0.6
866,269 + AMB_RS04130 0.56 -0.7
866,269 + AMB_RS04130 0.56 +0.1
866,269 + AMB_RS04130 0.56 -0.9
866,269 + AMB_RS04130 0.56 -1.2
866,269 + AMB_RS04130 0.56 -1.5
866,269 + AMB_RS04130 0.56 -0.4
866,269 + AMB_RS04130 0.56 -0.8
866,270 - AMB_RS04130 0.56 -0.7
866,271 + AMB_RS04130 0.57 -0.2
866,271 + AMB_RS04130 0.57 -0.0
866,271 + AMB_RS04130 0.57 -2.1
866,272 - AMB_RS04130 0.57 -2.5
866,272 - AMB_RS04130 0.57 -0.5
866,272 - AMB_RS04130 0.57 -0.9
866,272 - AMB_RS04130 0.57 -0.4
866,272 - AMB_RS04130 0.57 -0.8
866,272 - AMB_RS04130 0.57 -1.5
866,272 - AMB_RS04130 0.57 -0.4
866,272 - AMB_RS04130 0.57 -0.4
866,272 - AMB_RS04130 0.57 +1.6
866,272 - AMB_RS04130 0.57 +0.1
866,349 + AMB_RS04130 0.62 -1.4
866,349 + AMB_RS04130 0.62 -1.0
866,350 - AMB_RS04130 0.62 -1.2
866,350 - AMB_RS04130 0.62 +0.1
866,350 - AMB_RS04130 0.62 -0.4
866,433 + AMB_RS04130 0.69 -0.3
866,433 + AMB_RS04130 0.69 -0.4
866,433 + AMB_RS04130 0.69 -0.7
866,434 - AMB_RS04130 0.69 -1.8

Or see this region's nucleotide sequence