Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04085 and AMB_RS04090 are separated by 60 nucleotides AMB_RS04090 and AMB_RS04095 are separated by 114 nucleotides
AMB_RS04085: AMB_RS04085 - GDP-L-fucose synthase, at 856,810 to 857,757
_RS04085
AMB_RS04090: AMB_RS04090 - MFS transporter, at 857,818 to 859,056
_RS04090
AMB_RS04095: AMB_RS04095 - 4-hydroxy-2-oxoheptanedioate aldolase, at 859,171 to 859,974
_RS04095
Position (kb) 857
858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 856.832 kb on + strand at 856.832 kb on + strand at 856.832 kb on + strand at 856.832 kb on + strand at 856.832 kb on + strand at 856.833 kb on - strand at 856.833 kb on - strand at 856.833 kb on - strand at 856.841 kb on + strand at 856.841 kb on + strand at 857.010 kb on + strand, within AMB_RS04085 at 857.010 kb on + strand, within AMB_RS04085 at 857.010 kb on + strand, within AMB_RS04085 at 857.102 kb on + strand, within AMB_RS04085 at 857.103 kb on - strand, within AMB_RS04085 at 857.279 kb on + strand, within AMB_RS04085 at 857.279 kb on + strand, within AMB_RS04085 at 857.291 kb on + strand, within AMB_RS04085 at 857.292 kb on - strand, within AMB_RS04085 at 857.292 kb on - strand, within AMB_RS04085 at 857.333 kb on + strand, within AMB_RS04085 at 857.333 kb on + strand, within AMB_RS04085 at 857.333 kb on + strand, within AMB_RS04085 at 857.333 kb on + strand, within AMB_RS04085 at 857.333 kb on + strand, within AMB_RS04085 at 857.334 kb on - strand, within AMB_RS04085 at 857.334 kb on - strand, within AMB_RS04085 at 857.334 kb on - strand, within AMB_RS04085 at 857.408 kb on + strand, within AMB_RS04085 at 857.409 kb on - strand, within AMB_RS04085 at 857.498 kb on + strand, within AMB_RS04085 at 857.498 kb on + strand, within AMB_RS04085 at 857.543 kb on - strand, within AMB_RS04085 at 857.771 kb on + strand at 857.771 kb on + strand at 857.794 kb on + strand at 857.794 kb on + strand at 857.795 kb on - strand at 857.795 kb on - strand at 857.988 kb on - strand, within AMB_RS04090 at 858.646 kb on - strand, within AMB_RS04090 at 858.911 kb on + strand, within AMB_RS04090 at 858.912 kb on - strand, within AMB_RS04090 at 859.021 kb on - strand at 859.036 kb on + strand at 859.037 kb on - strand at 859.037 kb on - strand at 859.037 kb on - strand at 859.037 kb on - strand at 859.037 kb on - strand at 859.172 kb on + strand at 859.172 kb on + strand at 859.172 kb on + strand at 859.173 kb on - strand at 859.173 kb on - strand at 859.173 kb on - strand at 859.173 kb on - strand at 859.173 kb on - strand at 859.173 kb on - strand at 859.175 kb on + strand at 859.175 kb on + strand at 859.217 kb on + strand at 859.217 kb on + strand at 859.217 kb on + strand at 859.218 kb on - strand at 859.218 kb on - strand at 859.218 kb on - strand at 859.565 kb on + strand, within AMB_RS04095 at 859.565 kb on + strand, within AMB_RS04095 at 859.566 kb on - strand, within AMB_RS04095 at 859.566 kb on - strand, within AMB_RS04095 at 859.779 kb on - strand, within AMB_RS04095 at 859.887 kb on + strand, within AMB_RS04095 at 859.887 kb on + strand, within AMB_RS04095 at 859.888 kb on - strand, within AMB_RS04095 at 860.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 856,832 + -0.9 856,832 + -0.3 856,832 + +0.1 856,832 + -0.3 856,832 + -0.0 856,833 - +0.1 856,833 - +0.0 856,833 - +0.6 856,841 + -0.4 856,841 + -0.5 857,010 + AMB_RS04085 0.21 -0.7 857,010 + AMB_RS04085 0.21 +0.1 857,010 + AMB_RS04085 0.21 +0.4 857,102 + AMB_RS04085 0.31 -1.2 857,103 - AMB_RS04085 0.31 -1.2 857,279 + AMB_RS04085 0.49 +0.1 857,279 + AMB_RS04085 0.49 -1.0 857,291 + AMB_RS04085 0.51 -3.3 857,292 - AMB_RS04085 0.51 -2.6 857,292 - AMB_RS04085 0.51 -1.5 857,333 + AMB_RS04085 0.55 +0.6 857,333 + AMB_RS04085 0.55 +0.5 857,333 + AMB_RS04085 0.55 -0.9 857,333 + AMB_RS04085 0.55 -0.7 857,333 + AMB_RS04085 0.55 -0.9 857,334 - AMB_RS04085 0.55 +0.8 857,334 - AMB_RS04085 0.55 -0.2 857,334 - AMB_RS04085 0.55 +0.3 857,408 + AMB_RS04085 0.63 -1.2 857,409 - AMB_RS04085 0.63 +0.2 857,498 + AMB_RS04085 0.73 -0.6 857,498 + AMB_RS04085 0.73 +0.9 857,543 - AMB_RS04085 0.77 -1.7 857,771 + +0.1 857,771 + +1.3 857,794 + -0.7 857,794 + -0.0 857,795 - +0.1 857,795 - -2.2 857,988 - AMB_RS04090 0.14 -2.5 858,646 - AMB_RS04090 0.67 +0.1 858,911 + AMB_RS04090 0.88 -0.6 858,912 - AMB_RS04090 0.88 -2.8 859,021 - -0.2 859,036 + -0.7 859,037 - +0.0 859,037 - -1.2 859,037 - +0.6 859,037 - -0.2 859,037 - -3.3 859,172 + -0.6 859,172 + -1.4 859,172 + -2.4 859,173 - -0.6 859,173 - -0.4 859,173 - -0.9 859,173 - -1.0 859,173 - -1.2 859,173 - -2.2 859,175 + -0.3 859,175 + +0.2 859,217 + +0.6 859,217 + +0.2 859,217 + -0.4 859,218 - -0.6 859,218 - -0.2 859,218 - -0.9 859,565 + AMB_RS04095 0.49 +0.4 859,565 + AMB_RS04095 0.49 +0.0 859,566 - AMB_RS04095 0.49 -0.7 859,566 - AMB_RS04095 0.49 +0.5 859,779 - AMB_RS04095 0.76 -0.6 859,887 + AMB_RS04095 0.89 +0.1 859,887 + AMB_RS04095 0.89 -0.4 859,888 - AMB_RS04095 0.89 -1.6 860,044 - -1.2
Or see this region's nucleotide sequence