Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04070

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04065 and AMB_RS04070 are separated by 193 nucleotidesAMB_RS04070 and AMB_RS04075 are separated by 39 nucleotidesAMB_RS04075 and AMB_RS04080 are separated by 10 nucleotides AMB_RS04065: AMB_RS04065 - class I SAM-dependent methyltransferase, at 851,833 to 852,636 _RS04065 AMB_RS04070: AMB_RS04070 - hypothetical protein, at 852,830 to 855,037 _RS04070 AMB_RS04075: AMB_RS04075 - membrane protein, at 855,077 to 856,012 _RS04075 AMB_RS04080: AMB_RS04080 - nucleoside-diphosphate-sugar pyrophosphorylase, at 856,023 to 856,757 _RS04080 Position (kb) 852 853 854 855 856Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 851.927 kb on + strand, within AMB_RS04065at 851.955 kb on - strand, within AMB_RS04065at 851.955 kb on - strand, within AMB_RS04065at 851.955 kb on - strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.179 kb on + strand, within AMB_RS04065at 852.180 kb on - strand, within AMB_RS04065at 852.180 kb on - strand, within AMB_RS04065at 852.188 kb on + strand, within AMB_RS04065at 852.189 kb on - strand, within AMB_RS04065at 852.189 kb on - strand, within AMB_RS04065at 852.443 kb on + strand, within AMB_RS04065at 852.443 kb on + strand, within AMB_RS04065at 852.516 kb on - strand, within AMB_RS04065at 852.516 kb on - strand, within AMB_RS04065at 852.589 kb on - strandat 852.589 kb on - strandat 852.590 kb on + strandat 852.591 kb on - strandat 852.647 kb on - strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.685 kb on - strandat 852.685 kb on - strandat 852.685 kb on - strandat 852.745 kb on - strandat 852.745 kb on - strandat 852.755 kb on + strandat 852.755 kb on + strandat 852.755 kb on + strandat 852.755 kb on + strandat 852.755 kb on + strandat 852.756 kb on - strandat 852.756 kb on - strandat 852.769 kb on + strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.929 kb on + strandat 852.929 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.936 kb on - strandat 852.936 kb on - strandat 852.936 kb on - strandat 852.936 kb on - strandat 852.936 kb on - strandat 852.936 kb on - strandat 853.061 kb on + strand, within AMB_RS04070at 853.207 kb on + strand, within AMB_RS04070at 853.244 kb on + strand, within AMB_RS04070at 853.251 kb on + strand, within AMB_RS04070at 853.251 kb on + strand, within AMB_RS04070at 853.252 kb on - strand, within AMB_RS04070at 853.451 kb on + strand, within AMB_RS04070at 853.451 kb on + strand, within AMB_RS04070at 853.452 kb on - strand, within AMB_RS04070at 853.454 kb on + strand, within AMB_RS04070at 853.454 kb on + strand, within AMB_RS04070at 853.454 kb on + strand, within AMB_RS04070at 853.454 kb on + strand, within AMB_RS04070at 853.455 kb on - strand, within AMB_RS04070at 853.455 kb on - strand, within AMB_RS04070at 853.562 kb on + strand, within AMB_RS04070at 853.562 kb on + strand, within AMB_RS04070at 853.563 kb on - strand, within AMB_RS04070at 853.563 kb on - strand, within AMB_RS04070at 853.563 kb on - strand, within AMB_RS04070at 853.563 kb on - strand, within AMB_RS04070at 853.565 kb on + strand, within AMB_RS04070at 853.565 kb on + strand, within AMB_RS04070at 853.565 kb on + strand, within AMB_RS04070at 853.566 kb on - strand, within AMB_RS04070at 853.566 kb on - strand, within AMB_RS04070at 853.566 kb on - strand, within AMB_RS04070at 853.613 kb on + strand, within AMB_RS04070at 853.613 kb on + strand, within AMB_RS04070at 853.613 kb on + strand, within AMB_RS04070at 853.614 kb on - strand, within AMB_RS04070at 853.752 kb on - strand, within AMB_RS04070at 853.752 kb on - strand, within AMB_RS04070at 853.773 kb on - strand, within AMB_RS04070at 853.901 kb on + strand, within AMB_RS04070at 853.901 kb on + strand, within AMB_RS04070at 853.902 kb on - strand, within AMB_RS04070at 853.902 kb on - strand, within AMB_RS04070at 853.902 kb on - strand, within AMB_RS04070at 853.903 kb on + strand, within AMB_RS04070at 853.904 kb on - strand, within AMB_RS04070at 853.904 kb on - strand, within AMB_RS04070at 853.985 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.372 kb on + strand, within AMB_RS04070at 854.373 kb on - strand, within AMB_RS04070at 854.373 kb on - strand, within AMB_RS04070at 854.373 kb on - strand, within AMB_RS04070at 854.373 kb on - strand, within AMB_RS04070at 854.374 kb on + strand, within AMB_RS04070at 854.375 kb on - strand, within AMB_RS04070at 854.375 kb on - strand, within AMB_RS04070at 854.388 kb on - strand, within AMB_RS04070at 854.388 kb on - strand, within AMB_RS04070at 854.388 kb on - strand, within AMB_RS04070at 854.510 kb on + strand, within AMB_RS04070at 854.510 kb on + strand, within AMB_RS04070at 854.561 kb on + strand, within AMB_RS04070at 854.561 kb on + strand, within AMB_RS04070at 854.561 kb on + strand, within AMB_RS04070at 854.591 kb on + strand, within AMB_RS04070at 854.592 kb on - strand, within AMB_RS04070at 854.666 kb on + strand, within AMB_RS04070at 854.666 kb on + strand, within AMB_RS04070at 854.666 kb on + strand, within AMB_RS04070at 854.666 kb on + strand, within AMB_RS04070at 854.739 kb on - strand, within AMB_RS04070at 854.739 kb on - strand, within AMB_RS04070at 854.831 kb on + strandat 854.832 kb on - strandat 854.832 kb on - strandat 854.833 kb on + strandat 854.833 kb on + strandat 854.833 kb on + strandat 854.834 kb on - strandat 854.834 kb on - strandat 854.834 kb on - strandat 854.834 kb on - strandat 854.838 kb on + strandat 854.930 kb on + strandat 854.930 kb on + strandat 854.931 kb on - strandat 854.989 kb on + strandat 854.990 kb on - strandat 855.035 kb on + strandat 855.036 kb on - strandat 855.080 kb on + strandat 855.080 kb on + strandat 855.644 kb on + strand, within AMB_RS04075at 855.764 kb on + strand, within AMB_RS04075at 855.887 kb on + strand, within AMB_RS04075at 855.887 kb on + strand, within AMB_RS04075at 855.887 kb on + strand, within AMB_RS04075at 855.935 kb on + strandat 855.935 kb on + strandat 855.976 kb on + strandat 855.976 kb on + strandat 855.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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851,927 + AMB_RS04065 0.12 +0.3
851,955 - AMB_RS04065 0.15 -0.3
851,955 - AMB_RS04065 0.15 -0.5
851,955 - AMB_RS04065 0.15 -0.6
852,105 + AMB_RS04065 0.34 -0.6
852,105 + AMB_RS04065 0.34 +0.8
852,105 + AMB_RS04065 0.34 -1.8
852,105 + AMB_RS04065 0.34 -3.0
852,105 + AMB_RS04065 0.34 -2.0
852,105 + AMB_RS04065 0.34 -0.3
852,106 - AMB_RS04065 0.34 +0.7
852,106 - AMB_RS04065 0.34 -1.7
852,106 - AMB_RS04065 0.34 -0.8
852,106 - AMB_RS04065 0.34 +0.0
852,179 + AMB_RS04065 0.43 -0.0
852,180 - AMB_RS04065 0.43 -1.3
852,180 - AMB_RS04065 0.43 -0.4
852,188 + AMB_RS04065 0.44 -1.1
852,189 - AMB_RS04065 0.44 +0.4
852,189 - AMB_RS04065 0.44 +0.5
852,443 + AMB_RS04065 0.76 -1.3
852,443 + AMB_RS04065 0.76 +0.6
852,516 - AMB_RS04065 0.85 -0.9
852,516 - AMB_RS04065 0.85 -1.2
852,589 - -2.5
852,589 - -1.9
852,590 + -2.3
852,591 - +0.3
852,647 - +0.4
852,684 + +0.1
852,684 + -0.7
852,684 + +0.1
852,684 + -1.3
852,684 + -3.8
852,684 + -0.7
852,685 - -0.1
852,685 - -1.5
852,685 - +0.7
852,745 - -0.9
852,745 - -3.2
852,755 + -0.7
852,755 + -0.0
852,755 + -0.4
852,755 + +0.2
852,755 + -0.3
852,756 - -1.2
852,756 - +0.7
852,769 + -1.5
852,770 - -1.0
852,770 - -0.7
852,770 - -3.0
852,770 - -0.3
852,770 - -2.7
852,770 - -1.2
852,770 - +0.1
852,929 + -3.0
852,929 + -0.3
852,935 + -1.2
852,935 + -0.8
852,935 + +0.1
852,935 + -1.3
852,935 + +0.8
852,935 + +0.0
852,935 + -0.0
852,935 + -1.0
852,935 + +0.1
852,935 + -0.3
852,935 + -0.1
852,936 - -1.0
852,936 - -0.2
852,936 - -0.9
852,936 - -0.7
852,936 - -1.2
852,936 - -0.2
853,061 + AMB_RS04070 0.10 -2.7
853,207 + AMB_RS04070 0.17 +0.1
853,244 + AMB_RS04070 0.19 -2.9
853,251 + AMB_RS04070 0.19 -0.7
853,251 + AMB_RS04070 0.19 -0.4
853,252 - AMB_RS04070 0.19 -1.9
853,451 + AMB_RS04070 0.28 +0.9
853,451 + AMB_RS04070 0.28 -0.7
853,452 - AMB_RS04070 0.28 +0.1
853,454 + AMB_RS04070 0.28 -2.2
853,454 + AMB_RS04070 0.28 -1.5
853,454 + AMB_RS04070 0.28 -1.2
853,454 + AMB_RS04070 0.28 -3.5
853,455 - AMB_RS04070 0.28 -1.2
853,455 - AMB_RS04070 0.28 -0.5
853,562 + AMB_RS04070 0.33 -0.6
853,562 + AMB_RS04070 0.33 +0.4
853,563 - AMB_RS04070 0.33 -0.7
853,563 - AMB_RS04070 0.33 -4.1
853,563 - AMB_RS04070 0.33 -2.5
853,563 - AMB_RS04070 0.33 -1.4
853,565 + AMB_RS04070 0.33 -0.3
853,565 + AMB_RS04070 0.33 -0.4
853,565 + AMB_RS04070 0.33 -1.8
853,566 - AMB_RS04070 0.33 -0.6
853,566 - AMB_RS04070 0.33 -0.7
853,566 - AMB_RS04070 0.33 +0.9
853,613 + AMB_RS04070 0.35 -0.9
853,613 + AMB_RS04070 0.35 +0.1
853,613 + AMB_RS04070 0.35 -0.4
853,614 - AMB_RS04070 0.36 +0.6
853,752 - AMB_RS04070 0.42 -0.7
853,752 - AMB_RS04070 0.42 -2.4
853,773 - AMB_RS04070 0.43 -1.0
853,901 + AMB_RS04070 0.49 +3.8
853,901 + AMB_RS04070 0.49 +0.0
853,902 - AMB_RS04070 0.49 -0.6
853,902 - AMB_RS04070 0.49 -0.1
853,902 - AMB_RS04070 0.49 -0.3
853,903 + AMB_RS04070 0.49 -1.2
853,904 - AMB_RS04070 0.49 -0.9
853,904 - AMB_RS04070 0.49 -2.6
853,985 + AMB_RS04070 0.52 -1.1
854,372 + AMB_RS04070 0.70 -0.7
854,372 + AMB_RS04070 0.70 -0.3
854,372 + AMB_RS04070 0.70 -0.8
854,372 + AMB_RS04070 0.70 -1.0
854,372 + AMB_RS04070 0.70 -3.0
854,372 + AMB_RS04070 0.70 -2.3
854,372 + AMB_RS04070 0.70 -2.2
854,372 + AMB_RS04070 0.70 -0.2
854,372 + AMB_RS04070 0.70 +0.1
854,372 + AMB_RS04070 0.70 -1.9
854,372 + AMB_RS04070 0.70 -0.4
854,373 - AMB_RS04070 0.70 -0.4
854,373 - AMB_RS04070 0.70 -0.7
854,373 - AMB_RS04070 0.70 +0.6
854,373 - AMB_RS04070 0.70 -1.2
854,374 + AMB_RS04070 0.70 -1.4
854,375 - AMB_RS04070 0.70 -5.0
854,375 - AMB_RS04070 0.70 +4.1
854,388 - AMB_RS04070 0.71 -1.9
854,388 - AMB_RS04070 0.71 -0.9
854,388 - AMB_RS04070 0.71 -0.7
854,510 + AMB_RS04070 0.76 -0.4
854,510 + AMB_RS04070 0.76 -1.9
854,561 + AMB_RS04070 0.78 +1.5
854,561 + AMB_RS04070 0.78 +0.1
854,561 + AMB_RS04070 0.78 -1.7
854,591 + AMB_RS04070 0.80 -0.4
854,592 - AMB_RS04070 0.80 -0.5
854,666 + AMB_RS04070 0.83 -0.7
854,666 + AMB_RS04070 0.83 +1.6
854,666 + AMB_RS04070 0.83 +0.1
854,666 + AMB_RS04070 0.83 +0.0
854,739 - AMB_RS04070 0.86 +0.6
854,739 - AMB_RS04070 0.86 +0.5
854,831 + -0.5
854,832 - -1.8
854,832 - -0.7
854,833 + +0.6
854,833 + +0.4
854,833 + -1.1
854,834 - -2.9
854,834 - -1.9
854,834 - +0.1
854,834 - -2.7
854,838 + -2.9
854,930 + -1.7
854,930 + -1.4
854,931 - -2.7
854,989 + -3.8
854,990 - -0.9
855,035 + -2.2
855,036 - -0.4
855,080 + -0.9
855,080 + -3.0
855,644 + AMB_RS04075 0.61 -1.5
855,764 + AMB_RS04075 0.73 -2.1
855,887 + AMB_RS04075 0.87 -2.4
855,887 + AMB_RS04075 0.87 -2.3
855,887 + AMB_RS04075 0.87 -1.5
855,935 + -0.7
855,935 + -2.3
855,976 + -3.2
855,976 + -1.5
855,998 + -3.2

Or see this region's nucleotide sequence