Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04045

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04035 and AMB_RS04040 are separated by 1 nucleotidesAMB_RS04040 and AMB_RS04045 are separated by 99 nucleotidesAMB_RS04045 and AMB_RS04050 are separated by 28 nucleotides AMB_RS04035: AMB_RS04035 - hypothetical protein, at 844,574 to 845,050 _RS04035 AMB_RS04040: AMB_RS04040 - phosphatase, at 845,052 to 845,717 _RS04040 AMB_RS04045: AMB_RS04045 - B12-binding domain-containing radical SAM protein, at 845,817 to 847,313 _RS04045 AMB_RS04050: AMB_RS04050 - thiamine pyrophosphate-binding protein, at 847,342 to 849,183 _RS04050 Position (kb) 845 846 847 848Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 844.979 kb on + strand, within AMB_RS04035at 844.979 kb on + strand, within AMB_RS04035at 844.979 kb on + strand, within AMB_RS04035at 844.980 kb on - strand, within AMB_RS04035at 845.124 kb on + strand, within AMB_RS04040at 845.125 kb on - strand, within AMB_RS04040at 845.292 kb on + strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.502 kb on + strand, within AMB_RS04040at 845.625 kb on + strand, within AMB_RS04040at 845.626 kb on - strand, within AMB_RS04040at 845.626 kb on - strand, within AMB_RS04040at 845.626 kb on - strand, within AMB_RS04040at 845.626 kb on - strand, within AMB_RS04040at 845.627 kb on + strand, within AMB_RS04040at 845.627 kb on + strand, within AMB_RS04040at 845.627 kb on + strand, within AMB_RS04040at 845.627 kb on + strand, within AMB_RS04040at 845.627 kb on + strand, within AMB_RS04040at 845.628 kb on - strand, within AMB_RS04040at 845.628 kb on - strand, within AMB_RS04040at 845.772 kb on - strandat 845.833 kb on + strandat 845.834 kb on - strandat 845.834 kb on - strandat 845.834 kb on - strandat 845.834 kb on - strandat 845.868 kb on + strandat 845.868 kb on + strandat 845.868 kb on + strandat 845.869 kb on - strandat 846.054 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.237 kb on + strand, within AMB_RS04045at 846.237 kb on + strand, within AMB_RS04045at 846.237 kb on + strand, within AMB_RS04045at 846.238 kb on - strand, within AMB_RS04045at 846.335 kb on + strand, within AMB_RS04045at 846.465 kb on + strand, within AMB_RS04045at 846.466 kb on - strand, within AMB_RS04045at 846.466 kb on - strand, within AMB_RS04045at 846.466 kb on - strand, within AMB_RS04045at 846.466 kb on - strand, within AMB_RS04045at 846.603 kb on + strand, within AMB_RS04045at 846.604 kb on - strand, within AMB_RS04045at 846.668 kb on + strand, within AMB_RS04045at 846.668 kb on + strand, within AMB_RS04045at 846.669 kb on - strand, within AMB_RS04045at 846.718 kb on - strand, within AMB_RS04045at 846.816 kb on + strand, within AMB_RS04045at 846.871 kb on + strand, within AMB_RS04045at 846.901 kb on - strand, within AMB_RS04045at 846.901 kb on - strand, within AMB_RS04045at 846.901 kb on - strand, within AMB_RS04045at 846.915 kb on + strand, within AMB_RS04045at 846.916 kb on - strand, within AMB_RS04045at 846.918 kb on - strand, within AMB_RS04045at 846.918 kb on - strand, within AMB_RS04045at 846.918 kb on - strand, within AMB_RS04045at 846.918 kb on - strand, within AMB_RS04045at 847.104 kb on + strand, within AMB_RS04045at 847.105 kb on - strand, within AMB_RS04045at 847.198 kb on - strandat 847.198 kb on - strandat 847.215 kb on + strandat 847.216 kb on - strandat 847.311 kb on + strandat 847.312 kb on - strandat 847.312 kb on - strandat 847.312 kb on - strandat 847.338 kb on + strandat 847.338 kb on + strandat 847.338 kb on + strandat 847.339 kb on - strandat 847.357 kb on + strandat 847.357 kb on + strandat 847.357 kb on + strandat 847.357 kb on + strandat 847.357 kb on + strandat 847.357 kb on + strandat 847.357 kb on + strandat 847.358 kb on - strandat 847.358 kb on - strandat 847.358 kb on - strandat 847.408 kb on + strandat 847.465 kb on + strandat 847.465 kb on + strandat 847.465 kb on + strandat 847.465 kb on + strandat 847.465 kb on + strandat 847.465 kb on + strandat 847.466 kb on - strandat 847.466 kb on - strandat 847.513 kb on + strandat 847.514 kb on - strandat 847.514 kb on - strandat 847.514 kb on - strandat 847.514 kb on - strandat 847.514 kb on - strandat 847.603 kb on + strand, within AMB_RS04050at 847.732 kb on + strand, within AMB_RS04050at 847.732 kb on + strand, within AMB_RS04050at 847.732 kb on + strand, within AMB_RS04050at 847.831 kb on - strand, within AMB_RS04050at 847.945 kb on + strand, within AMB_RS04050at 847.945 kb on + strand, within AMB_RS04050at 847.945 kb on + strand, within AMB_RS04050at 847.945 kb on + strand, within AMB_RS04050at 847.945 kb on + strand, within AMB_RS04050at 847.946 kb on - strand, within AMB_RS04050at 847.946 kb on - strand, within AMB_RS04050at 847.946 kb on - strand, within AMB_RS04050at 847.946 kb on - strand, within AMB_RS04050at 847.946 kb on - strand, within AMB_RS04050at 848.131 kb on + strand, within AMB_RS04050at 848.131 kb on + strand, within AMB_RS04050at 848.131 kb on + strand, within AMB_RS04050at 848.131 kb on + strand, within AMB_RS04050at 848.131 kb on + strand, within AMB_RS04050at 848.132 kb on - strand, within AMB_RS04050at 848.132 kb on - strand, within AMB_RS04050at 848.132 kb on - strand, within AMB_RS04050at 848.132 kb on - strand, within AMB_RS04050at 848.149 kb on - strand, within AMB_RS04050at 848.254 kb on + strand, within AMB_RS04050at 848.254 kb on + strand, within AMB_RS04050at 848.254 kb on + strand, within AMB_RS04050at 848.254 kb on + strand, within AMB_RS04050at 848.255 kb on - strand, within AMB_RS04050at 848.255 kb on - strand, within AMB_RS04050at 848.255 kb on - strand, within AMB_RS04050

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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844,979 + AMB_RS04035 0.85 +1.1
844,979 + AMB_RS04035 0.85 -0.1
844,979 + AMB_RS04035 0.85 -0.2
844,980 - AMB_RS04035 0.85 -1.1
845,124 + AMB_RS04040 0.11 -2.1
845,125 - AMB_RS04040 0.11 -1.5
845,292 + AMB_RS04040 0.36 +0.7
845,293 - AMB_RS04040 0.36 +1.7
845,293 - AMB_RS04040 0.36 -0.3
845,293 - AMB_RS04040 0.36 -0.3
845,293 - AMB_RS04040 0.36 -0.7
845,502 + AMB_RS04040 0.68 -1.3
845,625 + AMB_RS04040 0.86 -1.5
845,626 - AMB_RS04040 0.86 -0.6
845,626 - AMB_RS04040 0.86 -2.2
845,626 - AMB_RS04040 0.86 +1.9
845,626 - AMB_RS04040 0.86 -1.3
845,627 + AMB_RS04040 0.86 -2.0
845,627 + AMB_RS04040 0.86 -1.9
845,627 + AMB_RS04040 0.86 -3.8
845,627 + AMB_RS04040 0.86 -0.3
845,627 + AMB_RS04040 0.86 +0.6
845,628 - AMB_RS04040 0.86 -0.7
845,628 - AMB_RS04040 0.86 -1.9
845,772 - -1.3
845,833 + -1.5
845,834 - +0.4
845,834 - -0.7
845,834 - +0.8
845,834 - +1.7
845,868 + +4.5
845,868 + -0.2
845,868 + +0.3
845,869 - +0.6
846,054 + AMB_RS04045 0.16 -0.2
846,213 + AMB_RS04045 0.26 +0.7
846,213 + AMB_RS04045 0.26 -0.9
846,213 + AMB_RS04045 0.26 -0.3
846,213 + AMB_RS04045 0.26 -0.3
846,213 + AMB_RS04045 0.26 -1.9
846,213 + AMB_RS04045 0.26 -0.9
846,213 + AMB_RS04045 0.26 -0.7
846,214 - AMB_RS04045 0.27 -0.7
846,214 - AMB_RS04045 0.27 -3.0
846,214 - AMB_RS04045 0.27 +1.2
846,214 - AMB_RS04045 0.27 -1.1
846,214 - AMB_RS04045 0.27 -1.3
846,214 - AMB_RS04045 0.27 -0.3
846,214 - AMB_RS04045 0.27 -0.8
846,214 - AMB_RS04045 0.27 -0.1
846,237 + AMB_RS04045 0.28 -0.1
846,237 + AMB_RS04045 0.28 -1.8
846,237 + AMB_RS04045 0.28 +0.7
846,238 - AMB_RS04045 0.28 -0.1
846,335 + AMB_RS04045 0.35 -1.5
846,465 + AMB_RS04045 0.43 +0.6
846,466 - AMB_RS04045 0.43 -0.7
846,466 - AMB_RS04045 0.43 -3.0
846,466 - AMB_RS04045 0.43 -1.3
846,466 - AMB_RS04045 0.43 -0.7
846,603 + AMB_RS04045 0.53 -1.3
846,604 - AMB_RS04045 0.53 -3.2
846,668 + AMB_RS04045 0.57 +0.7
846,668 + AMB_RS04045 0.57 -0.7
846,669 - AMB_RS04045 0.57 +0.3
846,718 - AMB_RS04045 0.60 +1.0
846,816 + AMB_RS04045 0.67 -1.8
846,871 + AMB_RS04045 0.70 +0.1
846,901 - AMB_RS04045 0.72 +0.4
846,901 - AMB_RS04045 0.72 -1.3
846,901 - AMB_RS04045 0.72 -2.2
846,915 + AMB_RS04045 0.73 -1.8
846,916 - AMB_RS04045 0.73 -0.3
846,918 - AMB_RS04045 0.74 -1.7
846,918 - AMB_RS04045 0.74 -2.9
846,918 - AMB_RS04045 0.74 -2.7
846,918 - AMB_RS04045 0.74 -1.5
847,104 + AMB_RS04045 0.86 +1.7
847,105 - AMB_RS04045 0.86 -1.7
847,198 - -3.0
847,198 - +0.1
847,215 + -1.0
847,216 - -0.9
847,311 + +0.1
847,312 - -0.2
847,312 - -0.2
847,312 - -0.4
847,338 + +0.9
847,338 + +0.1
847,338 + -0.4
847,339 - -2.0
847,357 + +0.2
847,357 + -2.7
847,357 + -1.7
847,357 + +0.0
847,357 + -1.9
847,357 + -0.6
847,357 + -0.0
847,358 - -1.2
847,358 - -0.2
847,358 - -1.2
847,408 + -1.2
847,465 + -2.3
847,465 + -0.2
847,465 + -0.4
847,465 + -1.3
847,465 + -0.3
847,465 + -2.3
847,466 - +1.7
847,466 - -1.7
847,513 + -0.2
847,514 - +1.4
847,514 - -0.5
847,514 - -0.3
847,514 - -0.3
847,514 - -1.0
847,603 + AMB_RS04050 0.14 -0.3
847,732 + AMB_RS04050 0.21 -0.3
847,732 + AMB_RS04050 0.21 -1.2
847,732 + AMB_RS04050 0.21 -0.1
847,831 - AMB_RS04050 0.27 -1.2
847,945 + AMB_RS04050 0.33 -1.5
847,945 + AMB_RS04050 0.33 -0.7
847,945 + AMB_RS04050 0.33 +0.8
847,945 + AMB_RS04050 0.33 -0.5
847,945 + AMB_RS04050 0.33 -0.1
847,946 - AMB_RS04050 0.33 +0.4
847,946 - AMB_RS04050 0.33 -1.4
847,946 - AMB_RS04050 0.33 -2.2
847,946 - AMB_RS04050 0.33 -0.7
847,946 - AMB_RS04050 0.33 +1.7
848,131 + AMB_RS04050 0.43 +0.2
848,131 + AMB_RS04050 0.43 +0.9
848,131 + AMB_RS04050 0.43 -1.1
848,131 + AMB_RS04050 0.43 +0.7
848,131 + AMB_RS04050 0.43 +0.7
848,132 - AMB_RS04050 0.43 -1.3
848,132 - AMB_RS04050 0.43 -0.2
848,132 - AMB_RS04050 0.43 -1.3
848,132 - AMB_RS04050 0.43 +0.1
848,149 - AMB_RS04050 0.44 -2.0
848,254 + AMB_RS04050 0.50 +0.9
848,254 + AMB_RS04050 0.50 -3.0
848,254 + AMB_RS04050 0.50 -0.4
848,254 + AMB_RS04050 0.50 -0.5
848,255 - AMB_RS04050 0.50 -1.2
848,255 - AMB_RS04050 0.50 +0.1
848,255 - AMB_RS04050 0.50 +0.7

Or see this region's nucleotide sequence