Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03880 and AMB_RS03885 are separated by 107 nucleotides AMB_RS03885 and AMB_RS03890 are separated by 13 nucleotides AMB_RS03890 and AMB_RS03895 are separated by 92 nucleotides AMB_RS03895 and AMB_RS03900 are separated by 128 nucleotides
AMB_RS03880: AMB_RS03880 - tetratricopeptide repeat-containing protein, at 814,871 to 815,638
_RS03880
AMB_RS03885: AMB_RS03885 - pentapeptide repeat-containing protein, at 815,746 to 816,240
_RS03885
AMB_RS03890: AMB_RS03890 - GGDEF domain-containing protein, at 816,254 to 817,312
_RS03890
AMB_RS03895: AMB_RS03895 - response regulator, at 817,405 to 818,133
_RS03895
AMB_RS03900: AMB_RS03900 - hypothetical protein, at 818,262 to 818,972
_RS03900
Position (kb) 816
817
818 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 815.293 kb on - strand, within AMB_RS03880 at 815.293 kb on - strand, within AMB_RS03880 at 815.293 kb on - strand, within AMB_RS03880 at 815.293 kb on - strand, within AMB_RS03880 at 815.293 kb on - strand, within AMB_RS03880 at 815.313 kb on + strand, within AMB_RS03880 at 815.313 kb on + strand, within AMB_RS03880 at 815.314 kb on - strand, within AMB_RS03880 at 815.314 kb on - strand, within AMB_RS03880 at 815.314 kb on - strand, within AMB_RS03880 at 815.434 kb on - strand, within AMB_RS03880 at 815.434 kb on - strand, within AMB_RS03880 at 815.434 kb on - strand, within AMB_RS03880 at 815.679 kb on + strand at 815.699 kb on - strand at 815.705 kb on + strand at 815.705 kb on + strand at 815.705 kb on + strand at 815.714 kb on + strand at 815.715 kb on - strand at 815.734 kb on + strand at 815.745 kb on + strand at 815.746 kb on - strand at 815.746 kb on - strand at 815.854 kb on + strand, within AMB_RS03885 at 815.855 kb on - strand, within AMB_RS03885 at 815.855 kb on - strand, within AMB_RS03885 at 815.855 kb on - strand, within AMB_RS03885 at 815.979 kb on + strand, within AMB_RS03885 at 815.979 kb on + strand, within AMB_RS03885 at 816.100 kb on + strand, within AMB_RS03885 at 816.100 kb on + strand, within AMB_RS03885 at 816.249 kb on + strand at 816.250 kb on - strand at 816.350 kb on + strand at 816.350 kb on + strand at 816.351 kb on - strand at 816.351 kb on - strand at 816.351 kb on - strand at 816.351 kb on - strand at 816.351 kb on - strand at 816.368 kb on + strand, within AMB_RS03890 at 816.368 kb on + strand, within AMB_RS03890 at 816.368 kb on + strand, within AMB_RS03890 at 816.368 kb on + strand, within AMB_RS03890 at 816.369 kb on - strand, within AMB_RS03890 at 816.369 kb on - strand, within AMB_RS03890 at 816.369 kb on - strand, within AMB_RS03890 at 816.369 kb on - strand, within AMB_RS03890 at 816.461 kb on + strand, within AMB_RS03890 at 816.462 kb on - strand, within AMB_RS03890 at 816.552 kb on - strand, within AMB_RS03890 at 816.552 kb on - strand, within AMB_RS03890 at 816.552 kb on - strand, within AMB_RS03890 at 816.584 kb on + strand, within AMB_RS03890 at 816.585 kb on - strand, within AMB_RS03890 at 816.929 kb on + strand, within AMB_RS03890 at 816.929 kb on + strand, within AMB_RS03890 at 816.930 kb on - strand, within AMB_RS03890 at 816.930 kb on - strand, within AMB_RS03890 at 816.930 kb on - strand, within AMB_RS03890 at 817.232 kb on + strand at 817.232 kb on + strand at 817.232 kb on + strand at 817.232 kb on + strand at 817.232 kb on + strand at 817.232 kb on + strand at 817.232 kb on + strand at 817.233 kb on - strand at 817.233 kb on - strand at 817.233 kb on - strand at 817.233 kb on - strand at 817.233 kb on - strand at 817.310 kb on + strand at 817.310 kb on + strand at 817.311 kb on - strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.348 kb on + strand at 817.348 kb on + strand at 817.348 kb on + strand at 817.348 kb on + strand at 817.349 kb on - strand at 817.349 kb on - strand at 817.394 kb on + strand at 817.394 kb on + strand at 817.395 kb on - strand at 817.395 kb on - strand at 817.395 kb on - strand at 817.395 kb on - strand at 817.395 kb on - strand at 817.469 kb on - strand at 818.131 kb on + strand at 818.218 kb on - strand at 818.218 kb on - strand at 818.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 815,293 - AMB_RS03880 0.55 -0.8 815,293 - AMB_RS03880 0.55 -0.7 815,293 - AMB_RS03880 0.55 -0.5 815,293 - AMB_RS03880 0.55 -0.9 815,293 - AMB_RS03880 0.55 -1.3 815,313 + AMB_RS03880 0.58 -0.5 815,313 + AMB_RS03880 0.58 -0.1 815,314 - AMB_RS03880 0.58 -0.7 815,314 - AMB_RS03880 0.58 +0.1 815,314 - AMB_RS03880 0.58 -4.3 815,434 - AMB_RS03880 0.73 -0.8 815,434 - AMB_RS03880 0.73 -0.7 815,434 - AMB_RS03880 0.73 +0.3 815,679 + -0.3 815,699 - -1.5 815,705 + -1.7 815,705 + -1.2 815,705 + -1.7 815,714 + -0.2 815,715 - -0.9 815,734 + -2.9 815,745 + -0.3 815,746 - -0.3 815,746 - -2.7 815,854 + AMB_RS03885 0.22 -1.3 815,855 - AMB_RS03885 0.22 -1.9 815,855 - AMB_RS03885 0.22 -3.6 815,855 - AMB_RS03885 0.22 +0.1 815,979 + AMB_RS03885 0.47 +0.8 815,979 + AMB_RS03885 0.47 -0.5 816,100 + AMB_RS03885 0.72 -2.7 816,100 + AMB_RS03885 0.72 +0.2 816,249 + -3.3 816,250 - -0.3 816,350 + -0.1 816,350 + +0.9 816,351 - +0.7 816,351 - +0.2 816,351 - -0.7 816,351 - -1.2 816,351 - -0.5 816,368 + AMB_RS03890 0.11 +0.7 816,368 + AMB_RS03890 0.11 -0.5 816,368 + AMB_RS03890 0.11 -0.9 816,368 + AMB_RS03890 0.11 -1.0 816,369 - AMB_RS03890 0.11 -0.0 816,369 - AMB_RS03890 0.11 -2.4 816,369 - AMB_RS03890 0.11 -0.2 816,369 - AMB_RS03890 0.11 +0.9 816,461 + AMB_RS03890 0.20 +0.0 816,462 - AMB_RS03890 0.20 -1.8 816,552 - AMB_RS03890 0.28 -4.0 816,552 - AMB_RS03890 0.28 -0.0 816,552 - AMB_RS03890 0.28 -0.9 816,584 + AMB_RS03890 0.31 -1.3 816,585 - AMB_RS03890 0.31 -0.8 816,929 + AMB_RS03890 0.64 -1.0 816,929 + AMB_RS03890 0.64 -0.3 816,930 - AMB_RS03890 0.64 -1.5 816,930 - AMB_RS03890 0.64 -1.5 816,930 - AMB_RS03890 0.64 +0.3 817,232 + +0.7 817,232 + -0.5 817,232 + -0.9 817,232 + -3.2 817,232 + -0.2 817,232 + +1.7 817,232 + -1.3 817,233 - +0.2 817,233 - -0.5 817,233 - -0.2 817,233 - -2.2 817,233 - -2.7 817,310 + +0.1 817,310 + -1.1 817,311 - +2.7 817,346 - +0.7 817,346 - -0.4 817,346 - -3.4 817,346 - -0.7 817,348 + +0.0 817,348 + -0.5 817,348 + -0.3 817,348 + -2.4 817,349 - +1.2 817,349 - -0.5 817,394 + -1.6 817,394 + -0.7 817,395 - -1.5 817,395 - -2.4 817,395 - +0.5 817,395 - -1.2 817,395 - -1.8 817,469 - -0.3 818,131 + +0.1 818,218 - -0.7 818,218 - -0.7 818,278 - +0.1
Or see this region's nucleotide sequence