Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03680

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03675 and AMB_RS03680 overlap by 4 nucleotidesAMB_RS03680 and AMB_RS03685 are separated by 124 nucleotidesAMB_RS03685 and AMB_RS03690 overlap by 17 nucleotides AMB_RS03675: AMB_RS03675 - UDP-N-acetylglucosamine 4,6-dehydratase (inverting), at 775,369 to 776,451 _RS03675 AMB_RS03680: AMB_RS03680 - UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase, at 776,448 to 777,644 _RS03680 AMB_RS03685: AMB_RS03685 - spore coat polysaccharide biosynthesis protein F, at 777,769 to 778,533 _RS03685 AMB_RS03690: AMB_RS03690 - hypothetical protein, at 778,517 to 779,284 _RS03690 Position (kb) 776 777 778Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 775.537 kb on + strand, within AMB_RS03675at 775.537 kb on + strand, within AMB_RS03675at 775.537 kb on + strand, within AMB_RS03675at 775.537 kb on + strand, within AMB_RS03675at 775.537 kb on + strand, within AMB_RS03675at 775.538 kb on - strand, within AMB_RS03675at 775.538 kb on - strand, within AMB_RS03675at 775.538 kb on - strand, within AMB_RS03675at 775.538 kb on - strand, within AMB_RS03675at 775.633 kb on + strand, within AMB_RS03675at 775.634 kb on - strand, within AMB_RS03675at 775.634 kb on - strand, within AMB_RS03675at 775.634 kb on - strand, within AMB_RS03675at 775.634 kb on - strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.738 kb on + strand, within AMB_RS03675at 775.739 kb on - strand, within AMB_RS03675at 775.739 kb on - strand, within AMB_RS03675at 775.739 kb on - strand, within AMB_RS03675at 775.739 kb on - strand, within AMB_RS03675at 775.767 kb on + strand, within AMB_RS03675at 775.767 kb on + strand, within AMB_RS03675at 775.868 kb on - strand, within AMB_RS03675at 775.957 kb on + strand, within AMB_RS03675at 775.958 kb on - strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.134 kb on + strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.135 kb on - strand, within AMB_RS03675at 776.260 kb on + strand, within AMB_RS03675at 776.260 kb on + strand, within AMB_RS03675at 776.261 kb on - strand, within AMB_RS03675at 776.261 kb on - strand, within AMB_RS03675at 776.261 kb on - strand, within AMB_RS03675at 776.261 kb on - strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.293 kb on + strand, within AMB_RS03675at 776.294 kb on - strand, within AMB_RS03675at 776.294 kb on - strand, within AMB_RS03675at 776.294 kb on - strand, within AMB_RS03675at 776.394 kb on + strandat 776.395 kb on - strandat 776.395 kb on - strandat 776.473 kb on - strandat 776.473 kb on - strandat 776.473 kb on - strandat 776.501 kb on + strandat 776.501 kb on + strandat 776.502 kb on - strandat 776.502 kb on - strandat 776.727 kb on + strand, within AMB_RS03680at 776.727 kb on + strand, within AMB_RS03680at 776.728 kb on - strand, within AMB_RS03680at 776.728 kb on - strand, within AMB_RS03680at 776.728 kb on - strand, within AMB_RS03680at 776.728 kb on - strand, within AMB_RS03680at 777.180 kb on + strand, within AMB_RS03680at 777.180 kb on + strand, within AMB_RS03680at 777.180 kb on + strand, within AMB_RS03680at 777.183 kb on + strand, within AMB_RS03680at 777.183 kb on + strand, within AMB_RS03680at 777.183 kb on + strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.210 kb on + strand, within AMB_RS03680at 777.210 kb on + strand, within AMB_RS03680at 777.211 kb on - strand, within AMB_RS03680at 777.304 kb on - strand, within AMB_RS03680at 777.337 kb on + strand, within AMB_RS03680at 777.337 kb on + strand, within AMB_RS03680at 777.338 kb on - strand, within AMB_RS03680at 777.338 kb on - strand, within AMB_RS03680at 777.338 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.498 kb on + strand, within AMB_RS03680at 777.498 kb on + strand, within AMB_RS03680at 777.498 kb on + strand, within AMB_RS03680at 777.499 kb on - strand, within AMB_RS03680at 777.499 kb on - strand, within AMB_RS03680at 777.501 kb on + strand, within AMB_RS03680at 777.502 kb on - strand, within AMB_RS03680at 777.502 kb on - strand, within AMB_RS03680at 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.547 kb on - strandat 777.547 kb on - strandat 777.547 kb on - strandat 777.547 kb on - strandat 777.547 kb on - strandat 777.549 kb on + strandat 777.549 kb on + strandat 777.550 kb on - strandat 777.653 kb on - strandat 778.012 kb on + strand, within AMB_RS03685at 778.012 kb on + strand, within AMB_RS03685at 778.012 kb on + strand, within AMB_RS03685at 778.012 kb on + strand, within AMB_RS03685at 778.013 kb on - strand, within AMB_RS03685at 778.135 kb on + strand, within AMB_RS03685at 778.136 kb on - strand, within AMB_RS03685at 778.136 kb on - strand, within AMB_RS03685at 778.136 kb on - strand, within AMB_RS03685at 778.136 kb on - strand, within AMB_RS03685at 778.144 kb on - strand, within AMB_RS03685at 778.144 kb on - strand, within AMB_RS03685at 778.144 kb on - strand, within AMB_RS03685at 778.144 kb on - strand, within AMB_RS03685at 778.297 kb on - strand, within AMB_RS03685at 778.297 kb on - strand, within AMB_RS03685at 778.360 kb on + strand, within AMB_RS03685at 778.360 kb on + strand, within AMB_RS03685at 778.360 kb on + strand, within AMB_RS03685at 778.360 kb on + strand, within AMB_RS03685at 778.361 kb on - strand, within AMB_RS03685at 778.361 kb on - strand, within AMB_RS03685at 778.361 kb on - strand, within AMB_RS03685at 778.551 kb on + strandat 778.551 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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775,537 + AMB_RS03675 0.16 -0.0
775,537 + AMB_RS03675 0.16 -1.8
775,537 + AMB_RS03675 0.16 -0.9
775,537 + AMB_RS03675 0.16 -0.9
775,537 + AMB_RS03675 0.16 -0.3
775,538 - AMB_RS03675 0.16 -1.0
775,538 - AMB_RS03675 0.16 -0.3
775,538 - AMB_RS03675 0.16 +0.7
775,538 - AMB_RS03675 0.16 -1.5
775,633 + AMB_RS03675 0.24 -2.1
775,634 - AMB_RS03675 0.24 -1.0
775,634 - AMB_RS03675 0.24 -1.7
775,634 - AMB_RS03675 0.24 -0.4
775,634 - AMB_RS03675 0.24 -0.8
775,738 + AMB_RS03675 0.34 +1.1
775,738 + AMB_RS03675 0.34 -0.7
775,738 + AMB_RS03675 0.34 -0.6
775,738 + AMB_RS03675 0.34 +0.1
775,738 + AMB_RS03675 0.34 -0.9
775,738 + AMB_RS03675 0.34 -1.1
775,738 + AMB_RS03675 0.34 -0.7
775,739 - AMB_RS03675 0.34 -0.4
775,739 - AMB_RS03675 0.34 -2.1
775,739 - AMB_RS03675 0.34 -0.3
775,739 - AMB_RS03675 0.34 -0.3
775,767 + AMB_RS03675 0.37 -1.1
775,767 + AMB_RS03675 0.37 -0.4
775,868 - AMB_RS03675 0.46 +0.4
775,957 + AMB_RS03675 0.54 -0.7
775,958 - AMB_RS03675 0.54 -2.0
776,134 + AMB_RS03675 0.71 -1.7
776,134 + AMB_RS03675 0.71 +0.7
776,134 + AMB_RS03675 0.71 -0.3
776,134 + AMB_RS03675 0.71 -0.3
776,134 + AMB_RS03675 0.71 -1.3
776,134 + AMB_RS03675 0.71 +2.1
776,134 + AMB_RS03675 0.71 +1.7
776,134 + AMB_RS03675 0.71 -1.8
776,134 + AMB_RS03675 0.71 -0.9
776,134 + AMB_RS03675 0.71 +0.2
776,134 + AMB_RS03675 0.71 -1.1
776,134 + AMB_RS03675 0.71 -1.9
776,134 + AMB_RS03675 0.71 -0.6
776,134 + AMB_RS03675 0.71 -0.5
776,134 + AMB_RS03675 0.71 -1.3
776,134 + AMB_RS03675 0.71 -0.8
776,134 + AMB_RS03675 0.71 -1.0
776,135 - AMB_RS03675 0.71 -2.7
776,135 - AMB_RS03675 0.71 -1.7
776,135 - AMB_RS03675 0.71 -0.4
776,135 - AMB_RS03675 0.71 +0.7
776,135 - AMB_RS03675 0.71 -2.3
776,135 - AMB_RS03675 0.71 -4.4
776,135 - AMB_RS03675 0.71 -0.3
776,135 - AMB_RS03675 0.71 -2.8
776,135 - AMB_RS03675 0.71 +0.6
776,135 - AMB_RS03675 0.71 +0.6
776,135 - AMB_RS03675 0.71 -2.2
776,135 - AMB_RS03675 0.71 -1.8
776,135 - AMB_RS03675 0.71 -1.5
776,135 - AMB_RS03675 0.71 +0.1
776,135 - AMB_RS03675 0.71 -0.5
776,260 + AMB_RS03675 0.82 -3.3
776,260 + AMB_RS03675 0.82 -0.0
776,261 - AMB_RS03675 0.82 +0.4
776,261 - AMB_RS03675 0.82 -0.8
776,261 - AMB_RS03675 0.82 -0.2
776,261 - AMB_RS03675 0.82 -1.7
776,293 + AMB_RS03675 0.85 -0.3
776,293 + AMB_RS03675 0.85 +0.8
776,293 + AMB_RS03675 0.85 -1.1
776,293 + AMB_RS03675 0.85 -0.0
776,293 + AMB_RS03675 0.85 +2.1
776,293 + AMB_RS03675 0.85 -1.9
776,293 + AMB_RS03675 0.85 -0.4
776,293 + AMB_RS03675 0.85 -3.0
776,293 + AMB_RS03675 0.85 +0.7
776,294 - AMB_RS03675 0.85 +0.1
776,294 - AMB_RS03675 0.85 -0.9
776,294 - AMB_RS03675 0.85 -3.1
776,394 + -0.9
776,395 - -0.7
776,395 - +0.6
776,473 - -1.3
776,473 - -1.8
776,473 - -0.6
776,501 + -2.6
776,501 + -1.1
776,502 - -1.2
776,502 - -0.9
776,727 + AMB_RS03680 0.23 +0.1
776,727 + AMB_RS03680 0.23 -1.7
776,728 - AMB_RS03680 0.23 -3.6
776,728 - AMB_RS03680 0.23 -0.3
776,728 - AMB_RS03680 0.23 -0.8
776,728 - AMB_RS03680 0.23 -1.2
777,180 + AMB_RS03680 0.61 +1.7
777,180 + AMB_RS03680 0.61 +0.7
777,180 + AMB_RS03680 0.61 -0.7
777,183 + AMB_RS03680 0.61 -1.3
777,183 + AMB_RS03680 0.61 -0.9
777,183 + AMB_RS03680 0.61 +0.1
777,184 - AMB_RS03680 0.61 -2.5
777,184 - AMB_RS03680 0.61 -1.5
777,184 - AMB_RS03680 0.61 +0.7
777,184 - AMB_RS03680 0.61 -0.9
777,184 - AMB_RS03680 0.61 -0.3
777,210 + AMB_RS03680 0.64 -2.2
777,210 + AMB_RS03680 0.64 -1.8
777,211 - AMB_RS03680 0.64 -1.5
777,304 - AMB_RS03680 0.72 +0.1
777,337 + AMB_RS03680 0.74 -0.9
777,337 + AMB_RS03680 0.74 +0.4
777,338 - AMB_RS03680 0.74 -1.6
777,338 - AMB_RS03680 0.74 +0.7
777,338 - AMB_RS03680 0.74 -3.5
777,400 - AMB_RS03680 0.80 -0.7
777,400 - AMB_RS03680 0.80 -0.4
777,400 - AMB_RS03680 0.80 +0.1
777,400 - AMB_RS03680 0.80 -0.9
777,474 + AMB_RS03680 0.86 -2.0
777,474 + AMB_RS03680 0.86 +0.0
777,474 + AMB_RS03680 0.86 +0.1
777,474 + AMB_RS03680 0.86 -1.1
777,474 + AMB_RS03680 0.86 -0.3
777,474 + AMB_RS03680 0.86 -0.2
777,474 + AMB_RS03680 0.86 -1.3
777,474 + AMB_RS03680 0.86 -2.2
777,474 + AMB_RS03680 0.86 -0.1
777,474 + AMB_RS03680 0.86 -0.8
777,474 + AMB_RS03680 0.86 -0.5
777,474 + AMB_RS03680 0.86 -1.6
777,474 + AMB_RS03680 0.86 -1.7
777,474 + AMB_RS03680 0.86 -1.8
777,474 + AMB_RS03680 0.86 +0.1
777,474 + AMB_RS03680 0.86 +0.7
777,474 + AMB_RS03680 0.86 -1.1
777,474 + AMB_RS03680 0.86 +0.7
777,474 + AMB_RS03680 0.86 -0.7
777,474 + AMB_RS03680 0.86 +0.4
777,474 + AMB_RS03680 0.86 -0.4
777,475 - AMB_RS03680 0.86 -1.1
777,475 - AMB_RS03680 0.86 -1.1
777,475 - AMB_RS03680 0.86 -1.7
777,475 - AMB_RS03680 0.86 +0.9
777,475 - AMB_RS03680 0.86 -1.3
777,475 - AMB_RS03680 0.86 -1.3
777,475 - AMB_RS03680 0.86 -0.4
777,475 - AMB_RS03680 0.86 +1.4
777,475 - AMB_RS03680 0.86 -1.6
777,475 - AMB_RS03680 0.86 -3.7
777,475 - AMB_RS03680 0.86 -1.5
777,475 - AMB_RS03680 0.86 -0.9
777,475 - AMB_RS03680 0.86 +1.7
777,475 - AMB_RS03680 0.86 -3.1
777,498 + AMB_RS03680 0.88 -0.4
777,498 + AMB_RS03680 0.88 -2.0
777,498 + AMB_RS03680 0.88 -3.0
777,499 - AMB_RS03680 0.88 +0.7
777,499 - AMB_RS03680 0.88 -1.1
777,501 + AMB_RS03680 0.88 +0.7
777,502 - AMB_RS03680 0.88 -0.4
777,502 - AMB_RS03680 0.88 -3.3
777,546 + -0.7
777,546 + -3.3
777,546 + -0.1
777,546 + +0.1
777,546 + -1.1
777,546 + -0.6
777,546 + -0.1
777,546 + -1.9
777,546 + -1.0
777,547 - -0.7
777,547 - -0.0
777,547 - +0.7
777,547 - -1.1
777,547 - -0.1
777,549 + -1.1
777,549 + +0.7
777,550 - -0.3
777,653 - -2.0
778,012 + AMB_RS03685 0.32 -1.2
778,012 + AMB_RS03685 0.32 +0.7
778,012 + AMB_RS03685 0.32 +1.1
778,012 + AMB_RS03685 0.32 +0.7
778,013 - AMB_RS03685 0.32 +0.6
778,135 + AMB_RS03685 0.48 -0.9
778,136 - AMB_RS03685 0.48 +0.8
778,136 - AMB_RS03685 0.48 +1.3
778,136 - AMB_RS03685 0.48 +1.3
778,136 - AMB_RS03685 0.48 -3.0
778,144 - AMB_RS03685 0.49 +0.7
778,144 - AMB_RS03685 0.49 +0.1
778,144 - AMB_RS03685 0.49 +0.5
778,144 - AMB_RS03685 0.49 +0.3
778,297 - AMB_RS03685 0.69 +0.8
778,297 - AMB_RS03685 0.69 +0.9
778,360 + AMB_RS03685 0.77 +0.8
778,360 + AMB_RS03685 0.77 +0.3
778,360 + AMB_RS03685 0.77 +0.9
778,360 + AMB_RS03685 0.77 +1.5
778,361 - AMB_RS03685 0.77 +1.3
778,361 - AMB_RS03685 0.77 +1.0
778,361 - AMB_RS03685 0.77 -0.5
778,551 + +0.3
778,551 + -1.9

Or see this region's nucleotide sequence