Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03370

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03365 and AMB_RS03370 overlap by 1 nucleotidesAMB_RS03370 and AMB_RS03375 are separated by 121 nucleotidesAMB_RS03375 and AMB_RS03380 overlap by 1 nucleotides AMB_RS03365: AMB_RS03365 - site-specific integrase, at 705,017 to 706,354 _RS03365 AMB_RS03370: AMB_RS03370 - hypothetical protein, at 706,354 to 707,037 _RS03370 AMB_RS03375: AMB_RS03375 - helix-turn-helix domain-containing protein, at 707,159 to 707,371 _RS03375 AMB_RS03380: AMB_RS03380 - hypothetical protein, at 707,371 to 708,591 _RS03380 Position (kb) 706 707 708Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 705.356 kb on + strand, within AMB_RS03365at 705.357 kb on - strand, within AMB_RS03365at 705.357 kb on - strand, within AMB_RS03365at 705.449 kb on + strand, within AMB_RS03365at 705.452 kb on - strand, within AMB_RS03365at 705.553 kb on + strand, within AMB_RS03365at 705.553 kb on + strand, within AMB_RS03365at 705.595 kb on - strand, within AMB_RS03365at 705.595 kb on - strand, within AMB_RS03365at 705.677 kb on + strand, within AMB_RS03365at 705.678 kb on - strand, within AMB_RS03365at 705.678 kb on - strand, within AMB_RS03365at 705.778 kb on + strand, within AMB_RS03365at 705.779 kb on - strand, within AMB_RS03365at 705.817 kb on + strand, within AMB_RS03365at 705.818 kb on - strand, within AMB_RS03365at 705.876 kb on + strand, within AMB_RS03365at 705.877 kb on - strand, within AMB_RS03365at 705.877 kb on - strand, within AMB_RS03365at 705.936 kb on - strand, within AMB_RS03365at 706.023 kb on - strand, within AMB_RS03365at 706.048 kb on + strand, within AMB_RS03365at 706.048 kb on + strand, within AMB_RS03365at 706.048 kb on + strand, within AMB_RS03365at 706.048 kb on + strand, within AMB_RS03365at 706.048 kb on + strand, within AMB_RS03365at 706.048 kb on + strand, within AMB_RS03365at 706.049 kb on - strand, within AMB_RS03365at 706.049 kb on - strand, within AMB_RS03365at 706.229 kb on + strandat 706.229 kb on + strandat 706.229 kb on + strandat 706.229 kb on + strandat 706.230 kb on - strandat 706.230 kb on - strandat 706.258 kb on + strandat 706.258 kb on + strandat 706.259 kb on - strandat 706.286 kb on + strandat 706.286 kb on + strandat 706.286 kb on + strandat 706.286 kb on + strandat 706.286 kb on + strandat 706.286 kb on + strandat 706.286 kb on + strandat 706.286 kb on + strandat 706.287 kb on - strandat 706.303 kb on + strandat 706.304 kb on - strandat 706.304 kb on - strandat 706.360 kb on + strandat 706.361 kb on - strandat 706.421 kb on - strandat 706.421 kb on - strandat 706.421 kb on - strandat 706.421 kb on - strandat 706.424 kb on + strand, within AMB_RS03370at 706.424 kb on + strand, within AMB_RS03370at 706.424 kb on + strand, within AMB_RS03370at 706.424 kb on + strand, within AMB_RS03370at 706.424 kb on + strand, within AMB_RS03370at 706.502 kb on + strand, within AMB_RS03370at 706.503 kb on - strand, within AMB_RS03370at 706.512 kb on + strand, within AMB_RS03370at 706.512 kb on + strand, within AMB_RS03370at 706.512 kb on + strand, within AMB_RS03370at 706.513 kb on - strand, within AMB_RS03370at 706.513 kb on - strand, within AMB_RS03370at 706.513 kb on - strand, within AMB_RS03370at 706.513 kb on - strand, within AMB_RS03370at 706.555 kb on - strand, within AMB_RS03370at 706.613 kb on + strand, within AMB_RS03370at 706.632 kb on + strand, within AMB_RS03370at 706.633 kb on - strand, within AMB_RS03370at 706.651 kb on + strand, within AMB_RS03370at 706.652 kb on - strand, within AMB_RS03370at 706.826 kb on + strand, within AMB_RS03370at 706.868 kb on + strand, within AMB_RS03370at 706.868 kb on + strand, within AMB_RS03370at 706.907 kb on + strand, within AMB_RS03370at 706.930 kb on - strand, within AMB_RS03370at 707.009 kb on + strandat 707.009 kb on + strandat 707.010 kb on - strandat 707.010 kb on - strandat 707.010 kb on - strandat 707.010 kb on - strandat 707.022 kb on - strandat 707.022 kb on - strandat 707.086 kb on + strandat 707.120 kb on + strandat 707.158 kb on - strandat 707.175 kb on + strandat 707.175 kb on + strandat 707.178 kb on + strandat 707.179 kb on - strandat 707.206 kb on + strand, within AMB_RS03375at 707.468 kb on - strandat 707.468 kb on - strandat 707.482 kb on + strandat 707.482 kb on + strandat 707.482 kb on + strandat 707.482 kb on + strandat 707.482 kb on + strandat 707.483 kb on - strandat 707.483 kb on - strandat 707.483 kb on - strandat 707.518 kb on + strand, within AMB_RS03380at 707.518 kb on + strand, within AMB_RS03380at 707.518 kb on + strand, within AMB_RS03380at 707.518 kb on + strand, within AMB_RS03380at 707.519 kb on - strand, within AMB_RS03380at 707.519 kb on - strand, within AMB_RS03380at 707.519 kb on - strand, within AMB_RS03380at 707.712 kb on + strand, within AMB_RS03380at 707.713 kb on - strand, within AMB_RS03380at 707.713 kb on - strand, within AMB_RS03380at 707.740 kb on + strand, within AMB_RS03380at 707.786 kb on - strand, within AMB_RS03380at 707.786 kb on - strand, within AMB_RS03380at 707.853 kb on + strand, within AMB_RS03380at 707.877 kb on + strand, within AMB_RS03380at 707.877 kb on + strand, within AMB_RS03380at 707.974 kb on + strand, within AMB_RS03380at 707.974 kb on + strand, within AMB_RS03380at 707.974 kb on + strand, within AMB_RS03380at 707.974 kb on + strand, within AMB_RS03380at 707.974 kb on + strand, within AMB_RS03380at 707.975 kb on - strand, within AMB_RS03380at 707.975 kb on - strand, within AMB_RS03380at 707.975 kb on - strand, within AMB_RS03380at 707.975 kb on - strand, within AMB_RS03380at 707.976 kb on + strand, within AMB_RS03380at 707.976 kb on + strand, within AMB_RS03380

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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705,356 + AMB_RS03365 0.25 -3.1
705,357 - AMB_RS03365 0.25 -0.4
705,357 - AMB_RS03365 0.25 -0.1
705,449 + AMB_RS03365 0.32 -1.5
705,452 - AMB_RS03365 0.33 +0.7
705,553 + AMB_RS03365 0.40 -0.6
705,553 + AMB_RS03365 0.40 -1.5
705,595 - AMB_RS03365 0.43 +0.1
705,595 - AMB_RS03365 0.43 -0.2
705,677 + AMB_RS03365 0.49 +4.4
705,678 - AMB_RS03365 0.49 +1.7
705,678 - AMB_RS03365 0.49 -0.9
705,778 + AMB_RS03365 0.57 -1.3
705,779 - AMB_RS03365 0.57 +1.4
705,817 + AMB_RS03365 0.60 -1.4
705,818 - AMB_RS03365 0.60 -3.6
705,876 + AMB_RS03365 0.64 -1.0
705,877 - AMB_RS03365 0.64 -4.4
705,877 - AMB_RS03365 0.64 -1.1
705,936 - AMB_RS03365 0.69 -0.8
706,023 - AMB_RS03365 0.75 -1.1
706,048 + AMB_RS03365 0.77 +0.7
706,048 + AMB_RS03365 0.77 -0.3
706,048 + AMB_RS03365 0.77 -0.6
706,048 + AMB_RS03365 0.77 -0.4
706,048 + AMB_RS03365 0.77 -1.9
706,048 + AMB_RS03365 0.77 +0.5
706,049 - AMB_RS03365 0.77 +0.1
706,049 - AMB_RS03365 0.77 -0.3
706,229 + -1.1
706,229 + -1.1
706,229 + -1.1
706,229 + +0.7
706,230 - -1.1
706,230 - -3.1
706,258 + -2.6
706,258 + -0.6
706,259 - -1.5
706,286 + -0.1
706,286 + +0.7
706,286 + -0.9
706,286 + -2.1
706,286 + -0.9
706,286 + -1.5
706,286 + -0.3
706,286 + -0.6
706,287 - -0.2
706,303 + -0.6
706,304 - +0.1
706,304 - -2.8
706,360 + +0.7
706,361 - +0.1
706,421 - -2.4
706,421 - -0.6
706,421 - +0.1
706,421 - -0.6
706,424 + AMB_RS03370 0.10 -1.3
706,424 + AMB_RS03370 0.10 +0.4
706,424 + AMB_RS03370 0.10 -0.3
706,424 + AMB_RS03370 0.10 -1.5
706,424 + AMB_RS03370 0.10 -0.7
706,502 + AMB_RS03370 0.22 -0.9
706,503 - AMB_RS03370 0.22 -0.6
706,512 + AMB_RS03370 0.23 -0.6
706,512 + AMB_RS03370 0.23 +0.1
706,512 + AMB_RS03370 0.23 -1.5
706,513 - AMB_RS03370 0.23 -1.0
706,513 - AMB_RS03370 0.23 +0.4
706,513 - AMB_RS03370 0.23 -0.4
706,513 - AMB_RS03370 0.23 -0.8
706,555 - AMB_RS03370 0.29 -0.9
706,613 + AMB_RS03370 0.38 -0.4
706,632 + AMB_RS03370 0.41 -1.3
706,633 - AMB_RS03370 0.41 +0.1
706,651 + AMB_RS03370 0.43 +0.7
706,652 - AMB_RS03370 0.44 -1.5
706,826 + AMB_RS03370 0.69 -0.2
706,868 + AMB_RS03370 0.75 -0.6
706,868 + AMB_RS03370 0.75 -2.2
706,907 + AMB_RS03370 0.81 -1.8
706,930 - AMB_RS03370 0.84 -0.3
707,009 + -1.8
707,009 + -1.3
707,010 - -0.2
707,010 - -0.0
707,010 - -0.4
707,010 - -1.1
707,022 - -0.6
707,022 - +0.0
707,086 + -1.5
707,120 + -1.1
707,158 - -0.6
707,175 + +0.1
707,175 + -0.3
707,178 + +2.1
707,179 - -1.1
707,206 + AMB_RS03375 0.22 +1.4
707,468 - +0.1
707,468 - +0.1
707,482 + -0.9
707,482 + +0.7
707,482 + +0.1
707,482 + -1.4
707,482 + +0.1
707,483 - +0.2
707,483 - -1.2
707,483 - -1.1
707,518 + AMB_RS03380 0.12 -1.9
707,518 + AMB_RS03380 0.12 +0.1
707,518 + AMB_RS03380 0.12 -0.3
707,518 + AMB_RS03380 0.12 -2.9
707,519 - AMB_RS03380 0.12 -0.0
707,519 - AMB_RS03380 0.12 +0.4
707,519 - AMB_RS03380 0.12 -1.4
707,712 + AMB_RS03380 0.28 +0.1
707,713 - AMB_RS03380 0.28 +0.0
707,713 - AMB_RS03380 0.28 -1.6
707,740 + AMB_RS03380 0.30 -0.6
707,786 - AMB_RS03380 0.34 -0.6
707,786 - AMB_RS03380 0.34 -0.6
707,853 + AMB_RS03380 0.39 +0.0
707,877 + AMB_RS03380 0.41 +0.7
707,877 + AMB_RS03380 0.41 -1.3
707,974 + AMB_RS03380 0.49 -0.8
707,974 + AMB_RS03380 0.49 -0.4
707,974 + AMB_RS03380 0.49 -0.4
707,974 + AMB_RS03380 0.49 -0.2
707,974 + AMB_RS03380 0.49 -0.5
707,975 - AMB_RS03380 0.49 -0.2
707,975 - AMB_RS03380 0.49 -0.3
707,975 - AMB_RS03380 0.49 -0.8
707,975 - AMB_RS03380 0.49 -0.3
707,976 + AMB_RS03380 0.50 -0.0
707,976 + AMB_RS03380 0.50 +0.4

Or see this region's nucleotide sequence