Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03355 and AMB_RS03360 are separated by 24 nucleotides AMB_RS03360 and AMB_RS03365 are separated by 356 nucleotides AMB_RS03365 and AMB_RS03370 overlap by 1 nucleotides AMB_RS03370 and AMB_RS03375 are separated by 121 nucleotides
AMB_RS03355: AMB_RS03355 - two-component system response regulator, at 703,170 to 704,333
_RS03355
AMB_RS03360: AMB_RS03360 - hypothetical protein, at 704,358 to 704,660
_RS03360
AMB_RS03365: AMB_RS03365 - site-specific integrase, at 705,017 to 706,354
_RS03365
AMB_RS03370: AMB_RS03370 - hypothetical protein, at 706,354 to 707,037
_RS03370
AMB_RS03375: AMB_RS03375 - helix-turn-helix domain-containing protein, at 707,159 to 707,371
_RS03375
Position (kb) 705
706
707 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 704.075 kb on + strand, within AMB_RS03355 at 704.075 kb on + strand, within AMB_RS03355 at 704.075 kb on + strand, within AMB_RS03355 at 704.075 kb on + strand, within AMB_RS03355 at 704.075 kb on + strand, within AMB_RS03355 at 704.076 kb on - strand, within AMB_RS03355 at 704.192 kb on - strand, within AMB_RS03355 at 704.326 kb on + strand at 704.326 kb on + strand at 704.326 kb on + strand at 704.326 kb on + strand at 704.326 kb on + strand at 704.326 kb on + strand at 704.326 kb on + strand at 704.327 kb on - strand at 704.327 kb on - strand at 704.327 kb on - strand at 704.327 kb on - strand at 704.327 kb on - strand at 704.327 kb on - strand at 704.420 kb on + strand, within AMB_RS03360 at 704.420 kb on + strand, within AMB_RS03360 at 704.420 kb on + strand, within AMB_RS03360 at 704.420 kb on + strand, within AMB_RS03360 at 704.420 kb on + strand, within AMB_RS03360 at 704.421 kb on - strand, within AMB_RS03360 at 704.421 kb on - strand, within AMB_RS03360 at 704.444 kb on + strand, within AMB_RS03360 at 704.500 kb on + strand, within AMB_RS03360 at 704.501 kb on - strand, within AMB_RS03360 at 704.501 kb on - strand, within AMB_RS03360 at 704.501 kb on - strand, within AMB_RS03360 at 704.506 kb on + strand, within AMB_RS03360 at 704.506 kb on + strand, within AMB_RS03360 at 704.506 kb on + strand, within AMB_RS03360 at 704.506 kb on + strand, within AMB_RS03360 at 704.507 kb on - strand, within AMB_RS03360 at 704.507 kb on - strand, within AMB_RS03360 at 704.600 kb on + strand, within AMB_RS03360 at 704.600 kb on + strand, within AMB_RS03360 at 704.601 kb on - strand, within AMB_RS03360 at 704.650 kb on + strand at 704.650 kb on + strand at 704.650 kb on + strand at 704.650 kb on + strand at 704.650 kb on + strand at 704.650 kb on + strand at 704.650 kb on + strand at 704.650 kb on + strand at 704.651 kb on - strand at 704.651 kb on - strand at 704.651 kb on - strand at 704.651 kb on - strand at 704.651 kb on - strand at 704.714 kb on + strand at 704.715 kb on - strand at 704.718 kb on + strand at 704.937 kb on + strand at 704.937 kb on + strand at 704.938 kb on - strand at 705.001 kb on + strand at 705.061 kb on - strand at 705.061 kb on - strand at 705.091 kb on + strand at 705.091 kb on + strand at 705.111 kb on + strand at 705.121 kb on + strand at 705.121 kb on + strand at 705.122 kb on - strand at 705.154 kb on + strand, within AMB_RS03365 at 705.155 kb on - strand, within AMB_RS03365 at 705.155 kb on - strand, within AMB_RS03365 at 705.312 kb on - strand, within AMB_RS03365 at 705.322 kb on - strand, within AMB_RS03365 at 705.356 kb on + strand, within AMB_RS03365 at 705.357 kb on - strand, within AMB_RS03365 at 705.357 kb on - strand, within AMB_RS03365 at 705.449 kb on + strand, within AMB_RS03365 at 705.452 kb on - strand, within AMB_RS03365 at 705.553 kb on + strand, within AMB_RS03365 at 705.553 kb on + strand, within AMB_RS03365 at 705.595 kb on - strand, within AMB_RS03365 at 705.595 kb on - strand, within AMB_RS03365 at 705.677 kb on + strand, within AMB_RS03365 at 705.678 kb on - strand, within AMB_RS03365 at 705.678 kb on - strand, within AMB_RS03365 at 705.778 kb on + strand, within AMB_RS03365 at 705.779 kb on - strand, within AMB_RS03365 at 705.817 kb on + strand, within AMB_RS03365 at 705.818 kb on - strand, within AMB_RS03365 at 705.876 kb on + strand, within AMB_RS03365 at 705.877 kb on - strand, within AMB_RS03365 at 705.877 kb on - strand, within AMB_RS03365 at 705.936 kb on - strand, within AMB_RS03365 at 706.023 kb on - strand, within AMB_RS03365 at 706.048 kb on + strand, within AMB_RS03365 at 706.048 kb on + strand, within AMB_RS03365 at 706.048 kb on + strand, within AMB_RS03365 at 706.048 kb on + strand, within AMB_RS03365 at 706.048 kb on + strand, within AMB_RS03365 at 706.048 kb on + strand, within AMB_RS03365 at 706.049 kb on - strand, within AMB_RS03365 at 706.049 kb on - strand, within AMB_RS03365 at 706.229 kb on + strand at 706.229 kb on + strand at 706.229 kb on + strand at 706.229 kb on + strand at 706.230 kb on - strand at 706.230 kb on - strand at 706.258 kb on + strand at 706.258 kb on + strand at 706.259 kb on - strand at 706.286 kb on + strand at 706.286 kb on + strand at 706.286 kb on + strand at 706.286 kb on + strand at 706.286 kb on + strand at 706.286 kb on + strand at 706.286 kb on + strand at 706.286 kb on + strand at 706.287 kb on - strand at 706.303 kb on + strand at 706.304 kb on - strand at 706.304 kb on - strand at 706.360 kb on + strand at 706.361 kb on - strand at 706.421 kb on - strand at 706.421 kb on - strand at 706.421 kb on - strand at 706.421 kb on - strand at 706.424 kb on + strand, within AMB_RS03370 at 706.424 kb on + strand, within AMB_RS03370 at 706.424 kb on + strand, within AMB_RS03370 at 706.424 kb on + strand, within AMB_RS03370 at 706.424 kb on + strand, within AMB_RS03370 at 706.502 kb on + strand, within AMB_RS03370 at 706.503 kb on - strand, within AMB_RS03370 at 706.512 kb on + strand, within AMB_RS03370 at 706.512 kb on + strand, within AMB_RS03370 at 706.512 kb on + strand, within AMB_RS03370 at 706.513 kb on - strand, within AMB_RS03370 at 706.513 kb on - strand, within AMB_RS03370 at 706.513 kb on - strand, within AMB_RS03370 at 706.513 kb on - strand, within AMB_RS03370 at 706.555 kb on - strand, within AMB_RS03370 at 706.613 kb on + strand, within AMB_RS03370 at 706.632 kb on + strand, within AMB_RS03370 at 706.633 kb on - strand, within AMB_RS03370 at 706.651 kb on + strand, within AMB_RS03370 at 706.652 kb on - strand, within AMB_RS03370 at 706.826 kb on + strand, within AMB_RS03370 at 706.868 kb on + strand, within AMB_RS03370 at 706.868 kb on + strand, within AMB_RS03370 at 706.907 kb on + strand, within AMB_RS03370 at 706.930 kb on - strand, within AMB_RS03370 at 707.009 kb on + strand at 707.009 kb on + strand at 707.010 kb on - strand at 707.010 kb on - strand at 707.010 kb on - strand at 707.010 kb on - strand at 707.022 kb on - strand at 707.022 kb on - strand at 707.086 kb on + strand at 707.120 kb on + strand at 707.158 kb on - strand at 707.175 kb on + strand at 707.175 kb on + strand at 707.178 kb on + strand at 707.179 kb on - strand at 707.206 kb on + strand, within AMB_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 704,075 + AMB_RS03355 0.78 -0.6 704,075 + AMB_RS03355 0.78 -0.9 704,075 + AMB_RS03355 0.78 -0.2 704,075 + AMB_RS03355 0.78 -2.1 704,075 + AMB_RS03355 0.78 -0.3 704,076 - AMB_RS03355 0.78 -0.6 704,192 - AMB_RS03355 0.88 +0.2 704,326 + -0.4 704,326 + +1.7 704,326 + -0.5 704,326 + -0.3 704,326 + -0.6 704,326 + -1.8 704,326 + -0.3 704,327 - -0.3 704,327 - +0.1 704,327 - +0.7 704,327 - -2.0 704,327 - +0.1 704,327 - +0.1 704,420 + AMB_RS03360 0.20 -1.3 704,420 + AMB_RS03360 0.20 -1.9 704,420 + AMB_RS03360 0.20 +0.1 704,420 + AMB_RS03360 0.20 +1.7 704,420 + AMB_RS03360 0.20 -0.5 704,421 - AMB_RS03360 0.21 -0.2 704,421 - AMB_RS03360 0.21 -1.3 704,444 + AMB_RS03360 0.28 -0.5 704,500 + AMB_RS03360 0.47 -0.3 704,501 - AMB_RS03360 0.47 -0.6 704,501 - AMB_RS03360 0.47 +0.2 704,501 - AMB_RS03360 0.47 -0.0 704,506 + AMB_RS03360 0.49 -2.3 704,506 + AMB_RS03360 0.49 +1.5 704,506 + AMB_RS03360 0.49 +0.1 704,506 + AMB_RS03360 0.49 +0.1 704,507 - AMB_RS03360 0.49 -0.5 704,507 - AMB_RS03360 0.49 +0.2 704,600 + AMB_RS03360 0.80 +0.1 704,600 + AMB_RS03360 0.80 -0.7 704,601 - AMB_RS03360 0.80 +0.1 704,650 + -0.6 704,650 + -0.7 704,650 + +0.1 704,650 + +0.4 704,650 + +0.1 704,650 + -2.6 704,650 + -0.3 704,650 + -0.7 704,651 - -0.3 704,651 - -1.3 704,651 - -0.1 704,651 - -1.3 704,651 - -1.5 704,714 + -0.1 704,715 - -1.9 704,718 + -0.3 704,937 + -1.3 704,937 + -0.8 704,938 - +0.1 705,001 + +0.1 705,061 - -1.6 705,061 - -0.6 705,091 + -0.3 705,091 + +0.4 705,111 + +4.2 705,121 + -0.9 705,121 + -0.5 705,122 - -1.2 705,154 + AMB_RS03365 0.10 -1.3 705,155 - AMB_RS03365 0.10 -1.1 705,155 - AMB_RS03365 0.10 -1.9 705,312 - AMB_RS03365 0.22 +1.5 705,322 - AMB_RS03365 0.23 +0.7 705,356 + AMB_RS03365 0.25 -3.1 705,357 - AMB_RS03365 0.25 -0.4 705,357 - AMB_RS03365 0.25 -0.1 705,449 + AMB_RS03365 0.32 -1.5 705,452 - AMB_RS03365 0.33 +0.7 705,553 + AMB_RS03365 0.40 -0.6 705,553 + AMB_RS03365 0.40 -1.5 705,595 - AMB_RS03365 0.43 +0.1 705,595 - AMB_RS03365 0.43 -0.2 705,677 + AMB_RS03365 0.49 +4.4 705,678 - AMB_RS03365 0.49 +1.7 705,678 - AMB_RS03365 0.49 -0.9 705,778 + AMB_RS03365 0.57 -1.3 705,779 - AMB_RS03365 0.57 +1.4 705,817 + AMB_RS03365 0.60 -1.4 705,818 - AMB_RS03365 0.60 -3.6 705,876 + AMB_RS03365 0.64 -1.0 705,877 - AMB_RS03365 0.64 -4.4 705,877 - AMB_RS03365 0.64 -1.1 705,936 - AMB_RS03365 0.69 -0.8 706,023 - AMB_RS03365 0.75 -1.1 706,048 + AMB_RS03365 0.77 +0.7 706,048 + AMB_RS03365 0.77 -0.3 706,048 + AMB_RS03365 0.77 -0.6 706,048 + AMB_RS03365 0.77 -0.4 706,048 + AMB_RS03365 0.77 -1.9 706,048 + AMB_RS03365 0.77 +0.5 706,049 - AMB_RS03365 0.77 +0.1 706,049 - AMB_RS03365 0.77 -0.3 706,229 + -1.1 706,229 + -1.1 706,229 + -1.1 706,229 + +0.7 706,230 - -1.1 706,230 - -3.1 706,258 + -2.6 706,258 + -0.6 706,259 - -1.5 706,286 + -0.1 706,286 + +0.7 706,286 + -0.9 706,286 + -2.1 706,286 + -0.9 706,286 + -1.5 706,286 + -0.3 706,286 + -0.6 706,287 - -0.2 706,303 + -0.6 706,304 - +0.1 706,304 - -2.8 706,360 + +0.7 706,361 - +0.1 706,421 - -2.4 706,421 - -0.6 706,421 - +0.1 706,421 - -0.6 706,424 + AMB_RS03370 0.10 -1.3 706,424 + AMB_RS03370 0.10 +0.4 706,424 + AMB_RS03370 0.10 -0.3 706,424 + AMB_RS03370 0.10 -1.5 706,424 + AMB_RS03370 0.10 -0.7 706,502 + AMB_RS03370 0.22 -0.9 706,503 - AMB_RS03370 0.22 -0.6 706,512 + AMB_RS03370 0.23 -0.6 706,512 + AMB_RS03370 0.23 +0.1 706,512 + AMB_RS03370 0.23 -1.5 706,513 - AMB_RS03370 0.23 -1.0 706,513 - AMB_RS03370 0.23 +0.4 706,513 - AMB_RS03370 0.23 -0.4 706,513 - AMB_RS03370 0.23 -0.8 706,555 - AMB_RS03370 0.29 -0.9 706,613 + AMB_RS03370 0.38 -0.4 706,632 + AMB_RS03370 0.41 -1.3 706,633 - AMB_RS03370 0.41 +0.1 706,651 + AMB_RS03370 0.43 +0.7 706,652 - AMB_RS03370 0.44 -1.5 706,826 + AMB_RS03370 0.69 -0.2 706,868 + AMB_RS03370 0.75 -0.6 706,868 + AMB_RS03370 0.75 -2.2 706,907 + AMB_RS03370 0.81 -1.8 706,930 - AMB_RS03370 0.84 -0.3 707,009 + -1.8 707,009 + -1.3 707,010 - -0.2 707,010 - -0.0 707,010 - -0.4 707,010 - -1.1 707,022 - -0.6 707,022 - +0.0 707,086 + -1.5 707,120 + -1.1 707,158 - -0.6 707,175 + +0.1 707,175 + -0.3 707,178 + +2.1 707,179 - -1.1 707,206 + AMB_RS03375 0.22 +1.4
Or see this region's nucleotide sequence