Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02920

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02905 and AMB_RS02910 are separated by 7 nucleotidesAMB_RS02910 and AMB_RS02915 overlap by 2 nucleotidesAMB_RS02915 and AMB_RS02920 overlap by 4 nucleotidesAMB_RS02920 and AMB_RS02925 are separated by 4 nucleotides AMB_RS02905: AMB_RS02905 - hypothetical protein, at 608,820 to 609,068 _RS02905 AMB_RS02910: AMB_RS02910 - 4a-hydroxytetrahydrobiopterin dehydratase, at 609,076 to 609,474 _RS02910 AMB_RS02915: AMB_RS02915 - hypothetical protein, at 609,473 to 609,868 _RS02915 AMB_RS02920: AMB_RS02920 - ATP-dependent protease, at 609,865 to 612,321 _RS02920 AMB_RS02925: AMB_RS02925 - spermidine/putrescine ABC transporter substrate-binding protein, at 612,326 to 613,369 _RS02925 Position (kb) 609 610 611 612 613Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 609.052 kb on + strandat 609.053 kb on - strandat 609.077 kb on + strandat 609.077 kb on + strandat 609.078 kb on - strandat 609.078 kb on - strandat 609.078 kb on - strandat 609.450 kb on - strandat 609.450 kb on - strandat 609.466 kb on + strandat 609.772 kb on + strand, within AMB_RS02915at 609.772 kb on + strand, within AMB_RS02915at 609.850 kb on + strandat 609.919 kb on + strandat 610.165 kb on + strand, within AMB_RS02920at 610.165 kb on + strand, within AMB_RS02920at 610.165 kb on + strand, within AMB_RS02920at 610.165 kb on + strand, within AMB_RS02920at 610.165 kb on + strand, within AMB_RS02920at 610.165 kb on + strand, within AMB_RS02920at 610.165 kb on + strand, within AMB_RS02920at 610.166 kb on - strand, within AMB_RS02920at 610.166 kb on - strand, within AMB_RS02920at 610.166 kb on - strand, within AMB_RS02920at 610.166 kb on - strand, within AMB_RS02920at 610.166 kb on - strand, within AMB_RS02920at 610.166 kb on - strand, within AMB_RS02920at 610.166 kb on - strand, within AMB_RS02920at 610.166 kb on - strand, within AMB_RS02920at 610.365 kb on + strand, within AMB_RS02920at 610.691 kb on - strand, within AMB_RS02920at 610.691 kb on - strand, within AMB_RS02920at 610.874 kb on - strand, within AMB_RS02920at 610.909 kb on + strand, within AMB_RS02920at 610.909 kb on + strand, within AMB_RS02920at 610.910 kb on - strand, within AMB_RS02920at 610.910 kb on - strand, within AMB_RS02920at 610.910 kb on - strand, within AMB_RS02920at 610.910 kb on - strand, within AMB_RS02920at 610.910 kb on - strand, within AMB_RS02920at 610.910 kb on - strand, within AMB_RS02920at 610.910 kb on - strand, within AMB_RS02920at 610.910 kb on - strand, within AMB_RS02920at 610.910 kb on - strand, within AMB_RS02920at 610.910 kb on - strand, within AMB_RS02920at 610.911 kb on + strand, within AMB_RS02920at 610.911 kb on + strand, within AMB_RS02920at 610.912 kb on - strand, within AMB_RS02920at 610.912 kb on - strand, within AMB_RS02920at 610.912 kb on - strand, within AMB_RS02920at 610.988 kb on - strand, within AMB_RS02920at 611.179 kb on + strand, within AMB_RS02920at 611.179 kb on + strand, within AMB_RS02920at 611.180 kb on - strand, within AMB_RS02920at 611.182 kb on + strand, within AMB_RS02920at 611.182 kb on + strand, within AMB_RS02920at 611.183 kb on - strand, within AMB_RS02920at 611.271 kb on + strand, within AMB_RS02920at 611.271 kb on + strand, within AMB_RS02920at 611.271 kb on + strand, within AMB_RS02920at 611.271 kb on + strand, within AMB_RS02920at 611.271 kb on + strand, within AMB_RS02920at 611.271 kb on + strand, within AMB_RS02920at 611.272 kb on - strand, within AMB_RS02920at 611.272 kb on - strand, within AMB_RS02920at 611.272 kb on - strand, within AMB_RS02920at 611.406 kb on + strand, within AMB_RS02920at 611.878 kb on + strand, within AMB_RS02920at 611.879 kb on - strand, within AMB_RS02920at 612.065 kb on + strand, within AMB_RS02920at 612.128 kb on - strandat 612.319 kb on + strandat 612.320 kb on - strandat 612.320 kb on - strandat 612.320 kb on - strandat 612.416 kb on + strandat 612.416 kb on + strandat 612.533 kb on + strand, within AMB_RS02925at 612.557 kb on + strand, within AMB_RS02925at 612.557 kb on + strand, within AMB_RS02925at 612.558 kb on - strand, within AMB_RS02925at 612.678 kb on - strand, within AMB_RS02925at 612.678 kb on - strand, within AMB_RS02925at 612.839 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.044 kb on - strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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609,052 + +0.5
609,053 - -0.2
609,077 + -4.1
609,077 + +1.7
609,078 - -1.3
609,078 - +1.7
609,078 - +0.6
609,450 - -0.1
609,450 - +0.1
609,466 + -0.3
609,772 + AMB_RS02915 0.76 +0.3
609,772 + AMB_RS02915 0.76 -1.7
609,850 + -2.4
609,919 + +0.1
610,165 + AMB_RS02920 0.12 -0.1
610,165 + AMB_RS02920 0.12 +1.6
610,165 + AMB_RS02920 0.12 -4.2
610,165 + AMB_RS02920 0.12 +0.2
610,165 + AMB_RS02920 0.12 -0.5
610,165 + AMB_RS02920 0.12 +0.7
610,165 + AMB_RS02920 0.12 +0.5
610,166 - AMB_RS02920 0.12 -4.6
610,166 - AMB_RS02920 0.12 +0.1
610,166 - AMB_RS02920 0.12 -4.2
610,166 - AMB_RS02920 0.12 -4.3
610,166 - AMB_RS02920 0.12 -4.0
610,166 - AMB_RS02920 0.12 +0.5
610,166 - AMB_RS02920 0.12 -1.3
610,166 - AMB_RS02920 0.12 -0.1
610,365 + AMB_RS02920 0.20 -2.4
610,691 - AMB_RS02920 0.34 +0.7
610,691 - AMB_RS02920 0.34 -2.1
610,874 - AMB_RS02920 0.41 -1.3
610,909 + AMB_RS02920 0.42 -0.3
610,909 + AMB_RS02920 0.42 -0.3
610,910 - AMB_RS02920 0.43 +0.5
610,910 - AMB_RS02920 0.43 -1.6
610,910 - AMB_RS02920 0.43 -1.6
610,910 - AMB_RS02920 0.43 -2.8
610,910 - AMB_RS02920 0.43 -0.6
610,910 - AMB_RS02920 0.43 -1.4
610,910 - AMB_RS02920 0.43 -3.0
610,910 - AMB_RS02920 0.43 +0.1
610,910 - AMB_RS02920 0.43 -1.6
610,910 - AMB_RS02920 0.43 -1.8
610,911 + AMB_RS02920 0.43 -2.2
610,911 + AMB_RS02920 0.43 -1.1
610,912 - AMB_RS02920 0.43 +0.2
610,912 - AMB_RS02920 0.43 -1.4
610,912 - AMB_RS02920 0.43 -0.3
610,988 - AMB_RS02920 0.46 -1.1
611,179 + AMB_RS02920 0.53 -3.8
611,179 + AMB_RS02920 0.53 -2.8
611,180 - AMB_RS02920 0.54 +0.0
611,182 + AMB_RS02920 0.54 -1.7
611,182 + AMB_RS02920 0.54 -1.6
611,183 - AMB_RS02920 0.54 +0.6
611,271 + AMB_RS02920 0.57 -2.4
611,271 + AMB_RS02920 0.57 -2.6
611,271 + AMB_RS02920 0.57 -0.0
611,271 + AMB_RS02920 0.57 -0.0
611,271 + AMB_RS02920 0.57 -1.1
611,271 + AMB_RS02920 0.57 +0.0
611,272 - AMB_RS02920 0.57 +0.7
611,272 - AMB_RS02920 0.57 -0.3
611,272 - AMB_RS02920 0.57 -2.0
611,406 + AMB_RS02920 0.63 +0.5
611,878 + AMB_RS02920 0.82 -2.7
611,879 - AMB_RS02920 0.82 -2.2
612,065 + AMB_RS02920 0.90 -1.3
612,128 - +0.3
612,319 + +0.1
612,320 - -0.6
612,320 - +0.4
612,320 - -1.1
612,416 + -0.7
612,416 + -0.6
612,533 + AMB_RS02925 0.20 -4.5
612,557 + AMB_RS02925 0.22 -0.0
612,557 + AMB_RS02925 0.22 +1.3
612,558 - AMB_RS02925 0.22 -0.7
612,678 - AMB_RS02925 0.34 -1.1
612,678 - AMB_RS02925 0.34 -0.9
612,839 + AMB_RS02925 0.49 -0.0
613,037 + AMB_RS02925 0.68 -1.7
613,037 + AMB_RS02925 0.68 -1.7
613,037 + AMB_RS02925 0.68 -1.8
613,037 + AMB_RS02925 0.68 -0.0
613,038 - AMB_RS02925 0.68 -2.7
613,038 - AMB_RS02925 0.68 +1.7
613,038 - AMB_RS02925 0.68 -0.1
613,038 - AMB_RS02925 0.68 -0.3
613,038 - AMB_RS02925 0.68 -0.3
613,038 - AMB_RS02925 0.68 -0.6
613,044 - AMB_RS02925 0.69 -0.3
613,181 + AMB_RS02925 0.82 +0.7
613,181 + AMB_RS02925 0.82 -1.9
613,181 + AMB_RS02925 0.82 -0.9
613,182 - AMB_RS02925 0.82 -1.3
613,182 - AMB_RS02925 0.82 -0.0
613,182 - AMB_RS02925 0.82 -0.6
613,182 - AMB_RS02925 0.82 -2.3

Or see this region's nucleotide sequence