Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02525 and AMB_RS02530 are separated by 136 nucleotides AMB_RS02530 and AMB_RS02535 overlap by 1 nucleotides AMB_RS02535 and AMB_RS02540 are separated by 181 nucleotides
AMB_RS02525: AMB_RS02525 - U32 family peptidase, at 522,253 to 523,158
_RS02525
AMB_RS02530: AMB_RS02530 - U32 family peptidase, at 523,295 to 524,326
_RS02530
AMB_RS02535: AMB_RS02535 - lipid carrier protein, at 524,326 to 525,006
_RS02535
AMB_RS02540: AMB_RS02540 - two-component system response regulator, at 525,188 to 526,174
_RS02540
Position (kb) 523
524
525 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 522.299 kb on + strand at 522.299 kb on + strand at 522.300 kb on - strand at 522.300 kb on - strand at 522.300 kb on - strand at 522.300 kb on - strand at 522.300 kb on - strand at 522.497 kb on + strand, within AMB_RS02525 at 522.497 kb on + strand, within AMB_RS02525 at 522.498 kb on - strand, within AMB_RS02525 at 522.498 kb on - strand, within AMB_RS02525 at 522.588 kb on - strand, within AMB_RS02525 at 522.674 kb on - strand, within AMB_RS02525 at 522.674 kb on - strand, within AMB_RS02525 at 522.674 kb on - strand, within AMB_RS02525 at 522.674 kb on - strand, within AMB_RS02525 at 522.674 kb on - strand, within AMB_RS02525 at 522.794 kb on + strand, within AMB_RS02525 at 522.794 kb on + strand, within AMB_RS02525 at 522.794 kb on + strand, within AMB_RS02525 at 522.794 kb on + strand, within AMB_RS02525 at 522.795 kb on - strand, within AMB_RS02525 at 522.795 kb on - strand, within AMB_RS02525 at 522.795 kb on - strand, within AMB_RS02525 at 522.795 kb on - strand, within AMB_RS02525 at 522.892 kb on + strand, within AMB_RS02525 at 522.893 kb on - strand, within AMB_RS02525 at 523.085 kb on + strand at 523.085 kb on + strand at 523.223 kb on + strand at 523.434 kb on + strand, within AMB_RS02530 at 523.434 kb on + strand, within AMB_RS02530 at 523.434 kb on + strand, within AMB_RS02530 at 523.435 kb on - strand, within AMB_RS02530 at 523.435 kb on - strand, within AMB_RS02530 at 523.542 kb on + strand, within AMB_RS02530 at 523.542 kb on + strand, within AMB_RS02530 at 523.542 kb on + strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.731 kb on + strand, within AMB_RS02530 at 523.731 kb on + strand, within AMB_RS02530 at 523.732 kb on - strand, within AMB_RS02530 at 523.732 kb on - strand, within AMB_RS02530 at 523.732 kb on - strand, within AMB_RS02530 at 523.890 kb on + strand, within AMB_RS02530 at 523.891 kb on - strand, within AMB_RS02530 at 524.118 kb on + strand, within AMB_RS02530 at 524.118 kb on + strand, within AMB_RS02530 at 524.202 kb on + strand, within AMB_RS02530 at 524.202 kb on + strand, within AMB_RS02530 at 524.202 kb on + strand, within AMB_RS02530 at 524.203 kb on - strand, within AMB_RS02530 at 524.203 kb on - strand, within AMB_RS02530 at 524.203 kb on - strand, within AMB_RS02530 at 524.203 kb on - strand, within AMB_RS02530 at 524.389 kb on + strand at 524.389 kb on + strand at 524.389 kb on + strand at 524.829 kb on - strand, within AMB_RS02535 at 525.055 kb on + strand at 525.055 kb on + strand at 525.170 kb on - strand at 525.170 kb on - strand at 525.170 kb on - strand at 525.170 kb on - strand at 525.194 kb on - strand at 525.194 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 522,299 + -2.5 522,299 + -1.6 522,300 - -1.6 522,300 - -1.7 522,300 - -2.6 522,300 - -1.0 522,300 - -2.6 522,497 + AMB_RS02525 0.27 -2.5 522,497 + AMB_RS02525 0.27 -4.1 522,498 - AMB_RS02525 0.27 +0.2 522,498 - AMB_RS02525 0.27 -1.8 522,588 - AMB_RS02525 0.37 -2.4 522,674 - AMB_RS02525 0.46 -3.2 522,674 - AMB_RS02525 0.46 -2.4 522,674 - AMB_RS02525 0.46 -0.6 522,674 - AMB_RS02525 0.46 -2.1 522,674 - AMB_RS02525 0.46 -3.1 522,794 + AMB_RS02525 0.60 -2.5 522,794 + AMB_RS02525 0.60 -1.7 522,794 + AMB_RS02525 0.60 -0.6 522,794 + AMB_RS02525 0.60 -0.8 522,795 - AMB_RS02525 0.60 -3.9 522,795 - AMB_RS02525 0.60 -0.9 522,795 - AMB_RS02525 0.60 -2.4 522,795 - AMB_RS02525 0.60 -2.1 522,892 + AMB_RS02525 0.71 -1.4 522,893 - AMB_RS02525 0.71 -3.5 523,085 + -1.6 523,085 + -3.7 523,223 + -3.0 523,434 + AMB_RS02530 0.13 -1.3 523,434 + AMB_RS02530 0.13 +0.2 523,434 + AMB_RS02530 0.13 -2.1 523,435 - AMB_RS02530 0.14 -1.3 523,435 - AMB_RS02530 0.14 -0.8 523,542 + AMB_RS02530 0.24 +0.8 523,542 + AMB_RS02530 0.24 -0.2 523,542 + AMB_RS02530 0.24 -0.2 523,543 - AMB_RS02530 0.24 +1.8 523,543 - AMB_RS02530 0.24 -1.6 523,543 - AMB_RS02530 0.24 -0.9 523,543 - AMB_RS02530 0.24 -0.6 523,543 - AMB_RS02530 0.24 -1.0 523,543 - AMB_RS02530 0.24 -0.9 523,731 + AMB_RS02530 0.42 +1.8 523,731 + AMB_RS02530 0.42 -1.0 523,732 - AMB_RS02530 0.42 -0.8 523,732 - AMB_RS02530 0.42 -1.4 523,732 - AMB_RS02530 0.42 -0.7 523,890 + AMB_RS02530 0.58 -0.6 523,891 - AMB_RS02530 0.58 -3.0 524,118 + AMB_RS02530 0.80 -2.7 524,118 + AMB_RS02530 0.80 -0.8 524,202 + AMB_RS02530 0.88 -2.0 524,202 + AMB_RS02530 0.88 -2.4 524,202 + AMB_RS02530 0.88 -2.4 524,203 - AMB_RS02530 0.88 +0.2 524,203 - AMB_RS02530 0.88 -2.8 524,203 - AMB_RS02530 0.88 -0.6 524,203 - AMB_RS02530 0.88 -6.1 524,389 + -1.0 524,389 + -2.0 524,389 + -4.2 524,829 - AMB_RS02535 0.74 -3.2 525,055 + -1.6 525,055 + +0.3 525,170 - -0.7 525,170 - -1.0 525,170 - -0.8 525,170 - +0.4 525,194 - -0.6 525,194 - -2.4
Or see this region's nucleotide sequence