Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02520 and AMB_RS02525 are separated by 111 nucleotides AMB_RS02525 and AMB_RS02530 are separated by 136 nucleotides
AMB_RS02520: AMB_RS02520 - hypothetical protein, at 521,131 to 522,141
_RS02520
AMB_RS02525: AMB_RS02525 - U32 family peptidase, at 522,253 to 523,158
_RS02525
AMB_RS02530: AMB_RS02530 - U32 family peptidase, at 523,295 to 524,326
_RS02530
Position (kb) 522
523
524 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 521.282 kb on - strand, within AMB_RS02520 at 521.357 kb on + strand, within AMB_RS02520 at 521.357 kb on + strand, within AMB_RS02520 at 521.358 kb on - strand, within AMB_RS02520 at 521.358 kb on - strand, within AMB_RS02520 at 521.429 kb on + strand, within AMB_RS02520 at 521.429 kb on + strand, within AMB_RS02520 at 521.429 kb on + strand, within AMB_RS02520 at 521.430 kb on - strand, within AMB_RS02520 at 521.510 kb on + strand, within AMB_RS02520 at 521.510 kb on + strand, within AMB_RS02520 at 521.510 kb on + strand, within AMB_RS02520 at 521.511 kb on - strand, within AMB_RS02520 at 521.511 kb on - strand, within AMB_RS02520 at 521.511 kb on - strand, within AMB_RS02520 at 521.583 kb on + strand, within AMB_RS02520 at 521.585 kb on + strand, within AMB_RS02520 at 521.586 kb on - strand, within AMB_RS02520 at 521.615 kb on + strand, within AMB_RS02520 at 521.615 kb on + strand, within AMB_RS02520 at 521.798 kb on + strand, within AMB_RS02520 at 521.798 kb on + strand, within AMB_RS02520 at 521.799 kb on - strand, within AMB_RS02520 at 521.799 kb on - strand, within AMB_RS02520 at 522.050 kb on + strand at 522.050 kb on + strand at 522.051 kb on - strand at 522.219 kb on + strand at 522.219 kb on + strand at 522.219 kb on + strand at 522.219 kb on + strand at 522.219 kb on + strand at 522.219 kb on + strand at 522.219 kb on + strand at 522.299 kb on + strand at 522.299 kb on + strand at 522.300 kb on - strand at 522.300 kb on - strand at 522.300 kb on - strand at 522.300 kb on - strand at 522.300 kb on - strand at 522.497 kb on + strand, within AMB_RS02525 at 522.497 kb on + strand, within AMB_RS02525 at 522.498 kb on - strand, within AMB_RS02525 at 522.498 kb on - strand, within AMB_RS02525 at 522.588 kb on - strand, within AMB_RS02525 at 522.674 kb on - strand, within AMB_RS02525 at 522.674 kb on - strand, within AMB_RS02525 at 522.674 kb on - strand, within AMB_RS02525 at 522.674 kb on - strand, within AMB_RS02525 at 522.674 kb on - strand, within AMB_RS02525 at 522.794 kb on + strand, within AMB_RS02525 at 522.794 kb on + strand, within AMB_RS02525 at 522.794 kb on + strand, within AMB_RS02525 at 522.794 kb on + strand, within AMB_RS02525 at 522.795 kb on - strand, within AMB_RS02525 at 522.795 kb on - strand, within AMB_RS02525 at 522.795 kb on - strand, within AMB_RS02525 at 522.795 kb on - strand, within AMB_RS02525 at 522.892 kb on + strand, within AMB_RS02525 at 522.893 kb on - strand, within AMB_RS02525 at 523.085 kb on + strand at 523.085 kb on + strand at 523.223 kb on + strand at 523.434 kb on + strand, within AMB_RS02530 at 523.434 kb on + strand, within AMB_RS02530 at 523.434 kb on + strand, within AMB_RS02530 at 523.435 kb on - strand, within AMB_RS02530 at 523.435 kb on - strand, within AMB_RS02530 at 523.542 kb on + strand, within AMB_RS02530 at 523.542 kb on + strand, within AMB_RS02530 at 523.542 kb on + strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.543 kb on - strand, within AMB_RS02530 at 523.731 kb on + strand, within AMB_RS02530 at 523.731 kb on + strand, within AMB_RS02530 at 523.732 kb on - strand, within AMB_RS02530 at 523.732 kb on - strand, within AMB_RS02530 at 523.732 kb on - strand, within AMB_RS02530 at 523.890 kb on + strand, within AMB_RS02530 at 523.891 kb on - strand, within AMB_RS02530 at 524.118 kb on + strand, within AMB_RS02530 at 524.118 kb on + strand, within AMB_RS02530
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 521,282 - AMB_RS02520 0.15 -0.2 521,357 + AMB_RS02520 0.22 +0.0 521,357 + AMB_RS02520 0.22 +0.6 521,358 - AMB_RS02520 0.22 +0.9 521,358 - AMB_RS02520 0.22 -2.9 521,429 + AMB_RS02520 0.29 -1.2 521,429 + AMB_RS02520 0.29 -4.6 521,429 + AMB_RS02520 0.29 -1.2 521,430 - AMB_RS02520 0.30 -1.6 521,510 + AMB_RS02520 0.37 -2.8 521,510 + AMB_RS02520 0.37 -2.0 521,510 + AMB_RS02520 0.37 +1.9 521,511 - AMB_RS02520 0.38 -2.0 521,511 - AMB_RS02520 0.38 -1.9 521,511 - AMB_RS02520 0.38 -2.0 521,583 + AMB_RS02520 0.45 -0.2 521,585 + AMB_RS02520 0.45 -2.5 521,586 - AMB_RS02520 0.45 -1.6 521,615 + AMB_RS02520 0.48 +0.7 521,615 + AMB_RS02520 0.48 -0.6 521,798 + AMB_RS02520 0.66 -3.9 521,798 + AMB_RS02520 0.66 -3.1 521,799 - AMB_RS02520 0.66 +1.8 521,799 - AMB_RS02520 0.66 -0.8 522,050 + -0.7 522,050 + +0.2 522,051 - -0.2 522,219 + -2.2 522,219 + -0.4 522,219 + +0.6 522,219 + -0.6 522,219 + -0.6 522,219 + +0.4 522,219 + -0.5 522,299 + -2.5 522,299 + -1.6 522,300 - -1.6 522,300 - -1.7 522,300 - -2.6 522,300 - -1.0 522,300 - -2.6 522,497 + AMB_RS02525 0.27 -2.5 522,497 + AMB_RS02525 0.27 -4.1 522,498 - AMB_RS02525 0.27 +0.2 522,498 - AMB_RS02525 0.27 -1.8 522,588 - AMB_RS02525 0.37 -2.4 522,674 - AMB_RS02525 0.46 -3.2 522,674 - AMB_RS02525 0.46 -2.4 522,674 - AMB_RS02525 0.46 -0.6 522,674 - AMB_RS02525 0.46 -2.1 522,674 - AMB_RS02525 0.46 -3.1 522,794 + AMB_RS02525 0.60 -2.5 522,794 + AMB_RS02525 0.60 -1.7 522,794 + AMB_RS02525 0.60 -0.6 522,794 + AMB_RS02525 0.60 -0.8 522,795 - AMB_RS02525 0.60 -3.9 522,795 - AMB_RS02525 0.60 -0.9 522,795 - AMB_RS02525 0.60 -2.4 522,795 - AMB_RS02525 0.60 -2.1 522,892 + AMB_RS02525 0.71 -1.4 522,893 - AMB_RS02525 0.71 -3.5 523,085 + -1.6 523,085 + -3.7 523,223 + -3.0 523,434 + AMB_RS02530 0.13 -1.3 523,434 + AMB_RS02530 0.13 +0.2 523,434 + AMB_RS02530 0.13 -2.1 523,435 - AMB_RS02530 0.14 -1.3 523,435 - AMB_RS02530 0.14 -0.8 523,542 + AMB_RS02530 0.24 +0.8 523,542 + AMB_RS02530 0.24 -0.2 523,542 + AMB_RS02530 0.24 -0.2 523,543 - AMB_RS02530 0.24 +1.8 523,543 - AMB_RS02530 0.24 -1.6 523,543 - AMB_RS02530 0.24 -0.9 523,543 - AMB_RS02530 0.24 -0.6 523,543 - AMB_RS02530 0.24 -1.0 523,543 - AMB_RS02530 0.24 -0.9 523,731 + AMB_RS02530 0.42 +1.8 523,731 + AMB_RS02530 0.42 -1.0 523,732 - AMB_RS02530 0.42 -0.8 523,732 - AMB_RS02530 0.42 -1.4 523,732 - AMB_RS02530 0.42 -0.7 523,890 + AMB_RS02530 0.58 -0.6 523,891 - AMB_RS02530 0.58 -3.0 524,118 + AMB_RS02530 0.80 -2.7 524,118 + AMB_RS02530 0.80 -0.8
Or see this region's nucleotide sequence