Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02260

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02250 and AMB_RS02255 are separated by 201 nucleotidesAMB_RS02255 and AMB_RS02260 are separated by 92 nucleotidesAMB_RS02260 and AMB_RS23115 are separated by 9 nucleotides AMB_RS02250: AMB_RS02250 - hypothetical protein, at 476,419 to 480,750 _RS02250 AMB_RS02255: AMB_RS02255 - hypothetical protein, at 480,952 to 481,497 _RS02255 AMB_RS02260: AMB_RS02260 - hypothetical protein, at 481,590 to 482,405 _RS02260 AMB_RS23115: AMB_RS23115 - HAMP domain-containing protein, at 482,415 to 484,079 _RS23115 Position (kb) 481 482 483Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 480.794 kb on + strandat 480.794 kb on + strandat 480.807 kb on + strandat 480.807 kb on + strandat 480.808 kb on - strandat 480.809 kb on + strandat 480.809 kb on + strandat 480.809 kb on + strandat 480.810 kb on - strandat 480.861 kb on + strandat 480.862 kb on - strandat 481.264 kb on + strand, within AMB_RS02255at 481.264 kb on + strand, within AMB_RS02255at 481.264 kb on + strand, within AMB_RS02255at 481.264 kb on + strand, within AMB_RS02255at 481.264 kb on + strand, within AMB_RS02255at 481.265 kb on - strand, within AMB_RS02255at 481.265 kb on - strand, within AMB_RS02255at 481.265 kb on - strand, within AMB_RS02255at 481.495 kb on + strandat 481.552 kb on + strandat 481.553 kb on - strandat 481.553 kb on - strandat 481.740 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.745 kb on + strand, within AMB_RS02260at 481.745 kb on + strand, within AMB_RS02260at 481.745 kb on + strand, within AMB_RS02260at 481.944 kb on + strand, within AMB_RS02260at 481.944 kb on + strand, within AMB_RS02260at 481.944 kb on + strand, within AMB_RS02260at 481.944 kb on + strand, within AMB_RS02260at 481.945 kb on - strand, within AMB_RS02260at 481.991 kb on + strand, within AMB_RS02260at 481.992 kb on - strand, within AMB_RS02260at 481.998 kb on + strand, within AMB_RS02260at 481.998 kb on + strand, within AMB_RS02260at 481.999 kb on - strand, within AMB_RS02260at 481.999 kb on - strand, within AMB_RS02260at 481.999 kb on - strand, within AMB_RS02260at 481.999 kb on - strand, within AMB_RS02260at 482.035 kb on - strand, within AMB_RS02260at 482.035 kb on - strand, within AMB_RS02260at 482.092 kb on - strand, within AMB_RS02260at 482.117 kb on + strand, within AMB_RS02260at 482.147 kb on + strand, within AMB_RS02260at 482.236 kb on - strand, within AMB_RS02260at 482.281 kb on - strand, within AMB_RS02260at 482.281 kb on - strand, within AMB_RS02260at 482.308 kb on - strand, within AMB_RS02260at 482.394 kb on + strandat 482.395 kb on - strandat 482.395 kb on - strandat 482.395 kb on - strandat 482.486 kb on - strandat 482.600 kb on - strand, within AMB_RS23115at 482.653 kb on - strand, within AMB_RS23115at 482.653 kb on - strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.095 kb on - strand, within AMB_RS23115at 483.095 kb on - strand, within AMB_RS23115at 483.095 kb on - strand, within AMB_RS23115at 483.097 kb on + strand, within AMB_RS23115at 483.098 kb on - strand, within AMB_RS23115at 483.098 kb on - strand, within AMB_RS23115at 483.098 kb on - strand, within AMB_RS23115at 483.128 kb on + strand, within AMB_RS23115at 483.129 kb on - strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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480,794 + +1.8
480,794 + +2.9
480,807 + -1.2
480,807 + -2.4
480,808 - -0.4
480,809 + -0.6
480,809 + -0.1
480,809 + -0.0
480,810 - -0.5
480,861 + -1.9
480,862 - -0.2
481,264 + AMB_RS02255 0.57 -0.0
481,264 + AMB_RS02255 0.57 -1.0
481,264 + AMB_RS02255 0.57 -0.8
481,264 + AMB_RS02255 0.57 -1.4
481,264 + AMB_RS02255 0.57 +0.5
481,265 - AMB_RS02255 0.57 -0.8
481,265 - AMB_RS02255 0.57 -1.0
481,265 - AMB_RS02255 0.57 -0.7
481,495 + +1.8
481,552 + -2.4
481,553 - +1.6
481,553 - -0.4
481,740 + AMB_RS02260 0.18 -0.3
481,743 + AMB_RS02260 0.19 -0.5
481,743 + AMB_RS02260 0.19 -0.6
481,743 + AMB_RS02260 0.19 -1.3
481,743 + AMB_RS02260 0.19 -2.2
481,743 + AMB_RS02260 0.19 +1.2
481,744 - AMB_RS02260 0.19 -0.2
481,744 - AMB_RS02260 0.19 -1.4
481,744 - AMB_RS02260 0.19 -2.9
481,744 - AMB_RS02260 0.19 -1.2
481,745 + AMB_RS02260 0.19 +0.6
481,745 + AMB_RS02260 0.19 -1.0
481,745 + AMB_RS02260 0.19 +0.2
481,944 + AMB_RS02260 0.43 -1.0
481,944 + AMB_RS02260 0.43 +0.4
481,944 + AMB_RS02260 0.43 -0.6
481,944 + AMB_RS02260 0.43 -0.4
481,945 - AMB_RS02260 0.44 +1.4
481,991 + AMB_RS02260 0.49 -1.1
481,992 - AMB_RS02260 0.49 +0.7
481,998 + AMB_RS02260 0.50 -1.0
481,998 + AMB_RS02260 0.50 +0.2
481,999 - AMB_RS02260 0.50 +0.2
481,999 - AMB_RS02260 0.50 -0.2
481,999 - AMB_RS02260 0.50 -1.9
481,999 - AMB_RS02260 0.50 -2.5
482,035 - AMB_RS02260 0.55 +1.8
482,035 - AMB_RS02260 0.55 -0.7
482,092 - AMB_RS02260 0.62 +0.3
482,117 + AMB_RS02260 0.65 -0.5
482,147 + AMB_RS02260 0.68 -0.2
482,236 - AMB_RS02260 0.79 -0.2
482,281 - AMB_RS02260 0.85 -3.1
482,281 - AMB_RS02260 0.85 +1.9
482,308 - AMB_RS02260 0.88 -1.5
482,394 + -0.5
482,395 - -2.2
482,395 - -0.5
482,395 - -1.9
482,486 - +0.6
482,600 - AMB_RS23115 0.11 -0.8
482,653 - AMB_RS23115 0.14 -1.8
482,653 - AMB_RS23115 0.14 -1.3
483,094 + AMB_RS23115 0.41 +0.0
483,094 + AMB_RS23115 0.41 -1.2
483,094 + AMB_RS23115 0.41 -0.2
483,094 + AMB_RS23115 0.41 +0.1
483,094 + AMB_RS23115 0.41 -3.0
483,094 + AMB_RS23115 0.41 -0.1
483,095 - AMB_RS23115 0.41 +0.2
483,095 - AMB_RS23115 0.41 -0.5
483,095 - AMB_RS23115 0.41 +0.1
483,097 + AMB_RS23115 0.41 +0.5
483,098 - AMB_RS23115 0.41 -0.8
483,098 - AMB_RS23115 0.41 -2.0
483,098 - AMB_RS23115 0.41 -0.9
483,128 + AMB_RS23115 0.43 -2.2
483,129 - AMB_RS23115 0.43 -0.2
483,130 + AMB_RS23115 0.43 -2.0
483,130 + AMB_RS23115 0.43 -3.5
483,130 + AMB_RS23115 0.43 -3.2
483,130 + AMB_RS23115 0.43 +0.8
483,130 + AMB_RS23115 0.43 -0.1
483,130 + AMB_RS23115 0.43 +0.9
483,130 + AMB_RS23115 0.43 -1.0
483,130 + AMB_RS23115 0.43 -0.2
483,130 + AMB_RS23115 0.43 -1.4
483,130 + AMB_RS23115 0.43 +0.1
483,130 + AMB_RS23115 0.43 -1.0
483,130 + AMB_RS23115 0.43 +0.3
483,131 - AMB_RS23115 0.43 -0.3
483,131 - AMB_RS23115 0.43 +0.0
483,131 - AMB_RS23115 0.43 -1.8
483,131 - AMB_RS23115 0.43 -1.4
483,131 - AMB_RS23115 0.43 -3.7
483,131 - AMB_RS23115 0.43 -0.5
483,131 - AMB_RS23115 0.43 -1.5
483,131 - AMB_RS23115 0.43 +0.2
483,131 - AMB_RS23115 0.43 -1.3
483,131 - AMB_RS23115 0.43 -1.0

Or see this region's nucleotide sequence