Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02145

Experiment: 150_an_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS02135 and AMB_RS02140 are separated by 0 nucleotidesAMB_RS02140 and AMB_RS02145 overlap by 4 nucleotidesAMB_RS02145 and AMB_RS02150 overlap by 4 nucleotides AMB_RS02135: AMB_RS02135 - acyltransferase, at 449,828 to 450,922 _RS02135 AMB_RS02140: AMB_RS02140 - PIG-L family deacetylase, at 450,923 to 451,735 _RS02140 AMB_RS02145: AMB_RS02145 - hypothetical protein, at 451,732 to 453,048 _RS02145 AMB_RS02150: AMB_RS02150 - hypothetical protein, at 453,045 to 454,085 _RS02150 Position (kb) 451 452 453 454Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.733 kb on + strand, within AMB_RS02135at 450.733 kb on + strand, within AMB_RS02135at 450.733 kb on + strand, within AMB_RS02135at 450.733 kb on + strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.805 kb on + strand, within AMB_RS02135at 450.806 kb on - strand, within AMB_RS02135at 450.806 kb on - strand, within AMB_RS02135at 450.852 kb on + strandat 450.921 kb on - strandat 450.921 kb on - strandat 450.921 kb on - strandat 451.077 kb on + strand, within AMB_RS02140at 451.077 kb on + strand, within AMB_RS02140at 451.077 kb on + strand, within AMB_RS02140at 451.078 kb on - strand, within AMB_RS02140at 451.078 kb on - strand, within AMB_RS02140at 451.078 kb on - strand, within AMB_RS02140at 451.110 kb on + strand, within AMB_RS02140at 451.110 kb on + strand, within AMB_RS02140at 451.110 kb on + strand, within AMB_RS02140at 451.111 kb on - strand, within AMB_RS02140at 451.117 kb on - strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.185 kb on + strand, within AMB_RS02140at 451.186 kb on - strand, within AMB_RS02140at 451.186 kb on - strand, within AMB_RS02140at 451.299 kb on + strand, within AMB_RS02140at 451.299 kb on + strand, within AMB_RS02140at 451.300 kb on - strand, within AMB_RS02140at 451.300 kb on - strand, within AMB_RS02140at 451.386 kb on + strand, within AMB_RS02140at 451.386 kb on + strand, within AMB_RS02140at 451.386 kb on + strand, within AMB_RS02140at 451.829 kb on - strandat 451.829 kb on - strandat 452.108 kb on + strand, within AMB_RS02145at 452.109 kb on - strand, within AMB_RS02145at 452.109 kb on - strand, within AMB_RS02145at 452.109 kb on - strand, within AMB_RS02145at 452.474 kb on + strand, within AMB_RS02145at 452.474 kb on + strand, within AMB_RS02145at 452.475 kb on - strand, within AMB_RS02145at 452.475 kb on - strand, within AMB_RS02145at 452.637 kb on + strand, within AMB_RS02145at 452.637 kb on + strand, within AMB_RS02145at 452.637 kb on + strand, within AMB_RS02145at 452.637 kb on + strand, within AMB_RS02145at 452.725 kb on + strand, within AMB_RS02145at 452.725 kb on + strand, within AMB_RS02145at 452.725 kb on + strand, within AMB_RS02145at 452.725 kb on + strand, within AMB_RS02145at 452.725 kb on + strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.858 kb on + strand, within AMB_RS02145at 452.859 kb on - strand, within AMB_RS02145at 452.859 kb on - strand, within AMB_RS02145at 453.099 kb on + strandat 453.201 kb on + strand, within AMB_RS02150at 453.201 kb on + strand, within AMB_RS02150at 453.561 kb on + strand, within AMB_RS02150at 453.562 kb on - strand, within AMB_RS02150at 453.870 kb on + strand, within AMB_RS02150at 453.870 kb on + strand, within AMB_RS02150at 453.870 kb on + strand, within AMB_RS02150at 453.870 kb on + strand, within AMB_RS02150at 453.870 kb on + strand, within AMB_RS02150at 453.871 kb on - strand, within AMB_RS02150at 453.871 kb on - strand, within AMB_RS02150at 453.871 kb on - strand, within AMB_RS02150at 453.871 kb on - strand, within AMB_RS02150at 453.871 kb on - strand, within AMB_RS02150at 453.888 kb on - strand, within AMB_RS02150at 453.888 kb on - strand, within AMB_RS02150at 453.902 kb on - strand, within AMB_RS02150at 453.915 kb on + strand, within AMB_RS02150at 453.916 kb on - strand, within AMB_RS02150at 453.916 kb on - strand, within AMB_RS02150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
remove
450,732 - AMB_RS02135 0.83 +3.0
450,732 - AMB_RS02135 0.83 -0.5
450,732 - AMB_RS02135 0.83 -1.8
450,732 - AMB_RS02135 0.83 -0.2
450,732 - AMB_RS02135 0.83 -2.1
450,732 - AMB_RS02135 0.83 +0.7
450,732 - AMB_RS02135 0.83 -0.5
450,732 - AMB_RS02135 0.83 +0.3
450,732 - AMB_RS02135 0.83 -0.9
450,732 - AMB_RS02135 0.83 -1.0
450,733 + AMB_RS02135 0.83 -0.3
450,733 + AMB_RS02135 0.83 -0.6
450,733 + AMB_RS02135 0.83 -2.3
450,733 + AMB_RS02135 0.83 -1.5
450,734 - AMB_RS02135 0.83 -0.2
450,734 - AMB_RS02135 0.83 -0.2
450,734 - AMB_RS02135 0.83 +0.2
450,734 - AMB_RS02135 0.83 -0.7
450,734 - AMB_RS02135 0.83 -0.5
450,734 - AMB_RS02135 0.83 -1.0
450,734 - AMB_RS02135 0.83 +0.8
450,734 - AMB_RS02135 0.83 -0.7
450,734 - AMB_RS02135 0.83 +1.0
450,805 + AMB_RS02135 0.89 -1.4
450,806 - AMB_RS02135 0.89 -0.8
450,806 - AMB_RS02135 0.89 +0.1
450,852 + -1.6
450,921 - -1.7
450,921 - +0.8
450,921 - +0.8
451,077 + AMB_RS02140 0.19 +1.8
451,077 + AMB_RS02140 0.19 +1.5
451,077 + AMB_RS02140 0.19 +1.7
451,078 - AMB_RS02140 0.19 +0.8
451,078 - AMB_RS02140 0.19 -3.9
451,078 - AMB_RS02140 0.19 +0.4
451,110 + AMB_RS02140 0.23 -1.0
451,110 + AMB_RS02140 0.23 -1.5
451,110 + AMB_RS02140 0.23 -3.7
451,111 - AMB_RS02140 0.23 -3.5
451,117 - AMB_RS02140 0.24 +0.1
451,158 + AMB_RS02140 0.29 -3.9
451,158 + AMB_RS02140 0.29 -3.6
451,158 + AMB_RS02140 0.29 -0.5
451,158 + AMB_RS02140 0.29 -0.2
451,158 + AMB_RS02140 0.29 -1.1
451,158 + AMB_RS02140 0.29 +0.8
451,158 + AMB_RS02140 0.29 +0.8
451,159 - AMB_RS02140 0.29 -1.2
451,159 - AMB_RS02140 0.29 +4.0
451,159 - AMB_RS02140 0.29 +0.8
451,159 - AMB_RS02140 0.29 -1.6
451,159 - AMB_RS02140 0.29 +0.1
451,159 - AMB_RS02140 0.29 +0.2
451,159 - AMB_RS02140 0.29 -1.0
451,159 - AMB_RS02140 0.29 -0.6
451,185 + AMB_RS02140 0.32 +0.2
451,186 - AMB_RS02140 0.32 -1.8
451,186 - AMB_RS02140 0.32 -0.7
451,299 + AMB_RS02140 0.46 -0.3
451,299 + AMB_RS02140 0.46 -0.7
451,300 - AMB_RS02140 0.46 -0.2
451,300 - AMB_RS02140 0.46 -0.2
451,386 + AMB_RS02140 0.57 +1.0
451,386 + AMB_RS02140 0.57 -0.2
451,386 + AMB_RS02140 0.57 -0.2
451,829 - -0.0
451,829 - -0.3
452,108 + AMB_RS02145 0.29 +0.1
452,109 - AMB_RS02145 0.29 -1.7
452,109 - AMB_RS02145 0.29 -2.5
452,109 - AMB_RS02145 0.29 -0.8
452,474 + AMB_RS02145 0.56 -1.0
452,474 + AMB_RS02145 0.56 +0.7
452,475 - AMB_RS02145 0.56 +0.2
452,475 - AMB_RS02145 0.56 +0.3
452,637 + AMB_RS02145 0.69 +0.9
452,637 + AMB_RS02145 0.69 -0.0
452,637 + AMB_RS02145 0.69 +1.2
452,637 + AMB_RS02145 0.69 -1.7
452,725 + AMB_RS02145 0.75 -0.2
452,725 + AMB_RS02145 0.75 -0.8
452,725 + AMB_RS02145 0.75 +0.1
452,725 + AMB_RS02145 0.75 -3.6
452,725 + AMB_RS02145 0.75 +1.0
452,726 - AMB_RS02145 0.75 -0.2
452,726 - AMB_RS02145 0.75 -0.6
452,726 - AMB_RS02145 0.75 -0.3
452,726 - AMB_RS02145 0.75 +0.0
452,726 - AMB_RS02145 0.75 -1.0
452,726 - AMB_RS02145 0.75 -0.2
452,858 + AMB_RS02145 0.85 +0.5
452,859 - AMB_RS02145 0.86 +0.3
452,859 - AMB_RS02145 0.86 -3.2
453,099 + +0.2
453,201 + AMB_RS02150 0.15 -1.0
453,201 + AMB_RS02150 0.15 -1.2
453,561 + AMB_RS02150 0.50 +1.8
453,562 - AMB_RS02150 0.50 +0.9
453,870 + AMB_RS02150 0.79 +0.1
453,870 + AMB_RS02150 0.79 +1.8
453,870 + AMB_RS02150 0.79 +2.2
453,870 + AMB_RS02150 0.79 -0.4
453,870 + AMB_RS02150 0.79 -0.5
453,871 - AMB_RS02150 0.79 +0.6
453,871 - AMB_RS02150 0.79 +0.4
453,871 - AMB_RS02150 0.79 +0.9
453,871 - AMB_RS02150 0.79 -0.2
453,871 - AMB_RS02150 0.79 -0.2
453,888 - AMB_RS02150 0.81 -1.5
453,888 - AMB_RS02150 0.81 -1.8
453,902 - AMB_RS02150 0.82 +0.3
453,915 + AMB_RS02150 0.84 -0.6
453,916 - AMB_RS02150 0.84 +0.6
453,916 - AMB_RS02150 0.84 +0.1

Or see this region's nucleotide sequence