Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01980 and AMB_RS01985 are separated by 2 nucleotides AMB_RS01985 and AMB_RS01990 are separated by 29 nucleotides AMB_RS01990 and AMB_RS01995 overlap by 8 nucleotides AMB_RS01995 and AMB_RS02000 are separated by 100 nucleotides
AMB_RS01980: AMB_RS01980 - hypothetical protein, at 418,067 to 419,410
_RS01980
AMB_RS01985: AMB_RS01985 - hypothetical protein, at 419,413 to 419,850
_RS01985
AMB_RS01990: AMB_RS01990 - hypothetical protein, at 419,880 to 420,230
_RS01990
AMB_RS01995: AMB_RS01995 - DUF1833 domain-containing protein, at 420,223 to 420,747
_RS01995
AMB_RS02000: AMB_RS02000 - hypothetical protein, at 420,848 to 421,243
_RS02000
Position (kb) 419
420 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 418.440 kb on - strand, within AMB_RS01980 at 418.440 kb on - strand, within AMB_RS01980 at 418.611 kb on - strand, within AMB_RS01980 at 418.635 kb on - strand, within AMB_RS01980 at 418.658 kb on + strand, within AMB_RS01980 at 418.658 kb on + strand, within AMB_RS01980 at 418.731 kb on - strand, within AMB_RS01980 at 418.731 kb on - strand, within AMB_RS01980 at 418.922 kb on + strand, within AMB_RS01980 at 418.923 kb on - strand, within AMB_RS01980 at 418.923 kb on - strand, within AMB_RS01980 at 418.923 kb on - strand, within AMB_RS01980 at 418.923 kb on - strand, within AMB_RS01980 at 418.965 kb on - strand, within AMB_RS01980 at 419.007 kb on - strand, within AMB_RS01980 at 419.007 kb on - strand, within AMB_RS01980 at 419.066 kb on + strand, within AMB_RS01980 at 419.066 kb on + strand, within AMB_RS01980 at 419.078 kb on + strand, within AMB_RS01980 at 419.087 kb on + strand, within AMB_RS01980 at 419.087 kb on + strand, within AMB_RS01980 at 419.090 kb on + strand, within AMB_RS01980 at 419.090 kb on + strand, within AMB_RS01980 at 419.090 kb on + strand, within AMB_RS01980 at 419.090 kb on + strand, within AMB_RS01980 at 419.090 kb on + strand, within AMB_RS01980 at 419.093 kb on + strand, within AMB_RS01980 at 419.093 kb on + strand, within AMB_RS01980 at 419.093 kb on + strand, within AMB_RS01980 at 419.093 kb on + strand, within AMB_RS01980 at 419.093 kb on + strand, within AMB_RS01980 at 419.144 kb on + strand, within AMB_RS01980 at 419.144 kb on + strand, within AMB_RS01980 at 419.145 kb on - strand, within AMB_RS01980 at 419.145 kb on - strand, within AMB_RS01980 at 419.145 kb on - strand, within AMB_RS01980 at 419.145 kb on - strand, within AMB_RS01980 at 419.145 kb on - strand, within AMB_RS01980 at 419.145 kb on - strand, within AMB_RS01980 at 419.174 kb on + strand, within AMB_RS01980 at 419.174 kb on + strand, within AMB_RS01980 at 419.174 kb on + strand, within AMB_RS01980 at 419.222 kb on + strand, within AMB_RS01980 at 419.222 kb on + strand, within AMB_RS01980 at 419.223 kb on - strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.343 kb on - strand at 419.343 kb on - strand at 419.343 kb on - strand at 419.343 kb on - strand at 419.546 kb on - strand, within AMB_RS01985 at 419.752 kb on + strand, within AMB_RS01985 at 419.753 kb on - strand, within AMB_RS01985 at 419.753 kb on - strand, within AMB_RS01985 at 419.753 kb on - strand, within AMB_RS01985 at 419.753 kb on - strand, within AMB_RS01985 at 419.831 kb on + strand at 419.832 kb on - strand at 419.832 kb on - strand at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.992 kb on + strand, within AMB_RS01990 at 419.992 kb on + strand, within AMB_RS01990 at 419.992 kb on + strand, within AMB_RS01990 at 419.992 kb on + strand, within AMB_RS01990 at 419.992 kb on + strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 420.572 kb on - strand, within AMB_RS01995 at 420.572 kb on - strand, within AMB_RS01995 at 420.572 kb on - strand, within AMB_RS01995 at 420.712 kb on + strand at 420.712 kb on + strand at 420.712 kb on + strand at 420.713 kb on - strand at 420.713 kb on - strand at 420.774 kb on - strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 418,440 - AMB_RS01980 0.28 -2.0 418,440 - AMB_RS01980 0.28 -0.2 418,611 - AMB_RS01980 0.40 -2.8 418,635 - AMB_RS01980 0.42 -1.2 418,658 + AMB_RS01980 0.44 +0.8 418,658 + AMB_RS01980 0.44 -1.2 418,731 - AMB_RS01980 0.49 -0.2 418,731 - AMB_RS01980 0.49 -0.5 418,922 + AMB_RS01980 0.64 -1.3 418,923 - AMB_RS01980 0.64 +1.0 418,923 - AMB_RS01980 0.64 -0.6 418,923 - AMB_RS01980 0.64 +0.9 418,923 - AMB_RS01980 0.64 -0.6 418,965 - AMB_RS01980 0.67 -1.9 419,007 - AMB_RS01980 0.70 +0.2 419,007 - AMB_RS01980 0.70 -1.5 419,066 + AMB_RS01980 0.74 -1.4 419,066 + AMB_RS01980 0.74 -0.7 419,078 + AMB_RS01980 0.75 -0.2 419,087 + AMB_RS01980 0.76 -2.1 419,087 + AMB_RS01980 0.76 -1.2 419,090 + AMB_RS01980 0.76 +0.4 419,090 + AMB_RS01980 0.76 -1.1 419,090 + AMB_RS01980 0.76 -1.9 419,090 + AMB_RS01980 0.76 +0.8 419,090 + AMB_RS01980 0.76 -0.2 419,093 + AMB_RS01980 0.76 -1.2 419,093 + AMB_RS01980 0.76 -2.6 419,093 + AMB_RS01980 0.76 +0.6 419,093 + AMB_RS01980 0.76 +1.6 419,093 + AMB_RS01980 0.76 +0.7 419,144 + AMB_RS01980 0.80 +0.8 419,144 + AMB_RS01980 0.80 -2.6 419,145 - AMB_RS01980 0.80 +0.2 419,145 - AMB_RS01980 0.80 -0.2 419,145 - AMB_RS01980 0.80 +0.3 419,145 - AMB_RS01980 0.80 -1.3 419,145 - AMB_RS01980 0.80 +0.4 419,145 - AMB_RS01980 0.80 -0.8 419,174 + AMB_RS01980 0.82 -1.3 419,174 + AMB_RS01980 0.82 +2.0 419,174 + AMB_RS01980 0.82 +0.6 419,222 + AMB_RS01980 0.86 -0.7 419,222 + AMB_RS01980 0.86 -3.8 419,223 - AMB_RS01980 0.86 -0.5 419,255 + AMB_RS01980 0.88 -1.6 419,255 + AMB_RS01980 0.88 -0.5 419,255 + AMB_RS01980 0.88 -0.5 419,255 + AMB_RS01980 0.88 -0.3 419,255 + AMB_RS01980 0.88 -0.3 419,255 + AMB_RS01980 0.88 -0.6 419,255 + AMB_RS01980 0.88 -3.0 419,255 + AMB_RS01980 0.88 -1.5 419,255 + AMB_RS01980 0.88 -0.2 419,256 - AMB_RS01980 0.88 -0.5 419,256 - AMB_RS01980 0.88 -1.6 419,256 - AMB_RS01980 0.88 -1.7 419,256 - AMB_RS01980 0.88 -1.4 419,256 - AMB_RS01980 0.88 -0.9 419,256 - AMB_RS01980 0.88 +0.0 419,343 - -0.9 419,343 - +0.2 419,343 - -0.4 419,343 - +0.7 419,546 - AMB_RS01985 0.30 +0.8 419,752 + AMB_RS01985 0.77 -1.8 419,753 - AMB_RS01985 0.78 +0.8 419,753 - AMB_RS01985 0.78 -0.5 419,753 - AMB_RS01985 0.78 -1.9 419,753 - AMB_RS01985 0.78 -1.8 419,831 + -2.1 419,832 - -0.8 419,832 - +0.2 419,925 + AMB_RS01990 0.13 -1.6 419,925 + AMB_RS01990 0.13 -0.2 419,925 + AMB_RS01990 0.13 +1.8 419,925 + AMB_RS01990 0.13 -0.8 419,925 + AMB_RS01990 0.13 -1.0 419,925 + AMB_RS01990 0.13 +0.2 419,925 + AMB_RS01990 0.13 -2.6 419,992 + AMB_RS01990 0.32 -1.2 419,992 + AMB_RS01990 0.32 +0.3 419,992 + AMB_RS01990 0.32 +0.2 419,992 + AMB_RS01990 0.32 +0.0 419,992 + AMB_RS01990 0.32 +0.2 419,993 - AMB_RS01990 0.32 -0.1 419,993 - AMB_RS01990 0.32 +0.2 419,993 - AMB_RS01990 0.32 +0.0 419,993 - AMB_RS01990 0.32 -1.2 419,993 - AMB_RS01990 0.32 -0.4 419,993 - AMB_RS01990 0.32 -1.2 419,993 - AMB_RS01990 0.32 -2.2 419,993 - AMB_RS01990 0.32 -0.5 420,572 - AMB_RS01995 0.66 -1.2 420,572 - AMB_RS01995 0.66 -0.5 420,572 - AMB_RS01995 0.66 +0.9 420,712 + -0.0 420,712 + -2.0 420,712 + -1.4 420,713 - -2.4 420,713 - -0.3 420,774 - -3.1 420,788 + +0.2 420,788 + -3.1 420,788 + -2.8 420,788 + -0.3 420,788 + +0.7 420,788 + +0.4 420,788 + -0.8 420,788 + +0.1 420,788 + -2.2 420,788 + -0.4 420,788 + -1.4 420,788 + -0.2 420,788 + +0.2 420,788 + -2.6 420,788 + -1.0 420,788 + -0.6 420,788 + +0.2 420,788 + -0.5 420,788 + +0.2 420,788 + +0.6 420,788 + +0.8 420,789 - -2.2 420,789 - -0.4 420,789 - -0.5 420,789 - +0.2 420,789 - +0.8 420,789 - -1.3 420,789 - -2.4 420,789 - -1.0 420,789 - +0.6 420,789 - -0.8 420,789 - -2.1 420,789 - +0.0 420,789 - +0.8 420,789 - -1.2 420,789 - -3.0 420,789 - -0.8
Or see this region's nucleotide sequence