Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01635 and AMB_RS01640 are separated by 24 nucleotides AMB_RS01640 and AMB_RS01645 are separated by 86 nucleotides AMB_RS01645 and AMB_RS01650 are separated by 58 nucleotides
AMB_RS01635: AMB_RS01635 - chemotaxis response regulator protein-glutamate methylesterase, at 361,730 to 362,875
_RS01635
AMB_RS01640: AMB_RS01640 - response regulator, at 362,900 to 363,265
_RS01640
AMB_RS01645: AMB_RS01645 - chemotaxis protein CheW, at 363,352 to 363,837
_RS01645
AMB_RS01650: AMB_RS01650 - ATPase, at 363,896 to 366,556
_RS01650
Position (kb) 362
363
364 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 361.954 kb on - strand, within AMB_RS01635 at 362.089 kb on - strand, within AMB_RS01635 at 362.089 kb on - strand, within AMB_RS01635 at 362.089 kb on - strand, within AMB_RS01635 at 362.535 kb on + strand, within AMB_RS01635 at 362.535 kb on + strand, within AMB_RS01635 at 362.535 kb on + strand, within AMB_RS01635 at 362.536 kb on - strand, within AMB_RS01635 at 362.881 kb on + strand at 362.902 kb on - strand at 362.964 kb on + strand, within AMB_RS01640 at 362.964 kb on + strand, within AMB_RS01640 at 362.965 kb on - strand, within AMB_RS01640 at 362.965 kb on - strand, within AMB_RS01640 at 362.965 kb on - strand, within AMB_RS01640 at 362.984 kb on - strand, within AMB_RS01640 at 362.998 kb on + strand, within AMB_RS01640 at 362.998 kb on + strand, within AMB_RS01640 at 362.999 kb on - strand, within AMB_RS01640 at 363.338 kb on - strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.349 kb on - strand at 363.349 kb on - strand at 363.349 kb on - strand at 363.349 kb on - strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.353 kb on + strand at 363.409 kb on - strand, within AMB_RS01645 at 363.422 kb on + strand, within AMB_RS01645 at 363.422 kb on + strand, within AMB_RS01645 at 363.423 kb on - strand, within AMB_RS01645 at 363.471 kb on + strand, within AMB_RS01645 at 363.533 kb on + strand, within AMB_RS01645 at 363.534 kb on - strand, within AMB_RS01645 at 363.534 kb on - strand, within AMB_RS01645 at 363.826 kb on + strand at 363.827 kb on - strand at 363.926 kb on - strand at 363.926 kb on - strand at 363.972 kb on + strand at 363.973 kb on - strand at 363.973 kb on - strand at 363.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 361,954 - AMB_RS01635 0.20 -1.0 362,089 - AMB_RS01635 0.31 +0.8 362,089 - AMB_RS01635 0.31 -1.9 362,089 - AMB_RS01635 0.31 +1.4 362,535 + AMB_RS01635 0.70 +0.1 362,535 + AMB_RS01635 0.70 +0.4 362,535 + AMB_RS01635 0.70 -0.2 362,536 - AMB_RS01635 0.70 -0.6 362,881 + -0.5 362,902 - -2.3 362,964 + AMB_RS01640 0.17 +2.1 362,964 + AMB_RS01640 0.17 -1.0 362,965 - AMB_RS01640 0.18 +0.8 362,965 - AMB_RS01640 0.18 +2.9 362,965 - AMB_RS01640 0.18 -0.5 362,984 - AMB_RS01640 0.23 +3.1 362,998 + AMB_RS01640 0.27 +1.3 362,998 + AMB_RS01640 0.27 +1.6 362,999 - AMB_RS01640 0.27 +3.0 363,338 - -1.0 363,348 + -1.5 363,348 + +0.0 363,348 + -3.8 363,348 + -0.9 363,348 + -1.5 363,349 - -0.6 363,349 - -0.0 363,349 - +0.4 363,349 - +0.2 363,350 + -4.1 363,350 + -1.1 363,350 + +0.1 363,350 + +0.0 363,350 + +0.2 363,351 - -1.5 363,351 - +0.1 363,351 - -0.2 363,351 - -0.4 363,351 - -0.0 363,353 + -1.2 363,409 - AMB_RS01645 0.12 -0.4 363,422 + AMB_RS01645 0.14 -0.4 363,422 + AMB_RS01645 0.14 +0.2 363,423 - AMB_RS01645 0.15 -0.1 363,471 + AMB_RS01645 0.24 -1.6 363,533 + AMB_RS01645 0.37 +0.2 363,534 - AMB_RS01645 0.37 +1.0 363,534 - AMB_RS01645 0.37 -1.2 363,826 + -0.9 363,827 - -0.5 363,926 - -0.9 363,926 - -0.2 363,972 + +0.8 363,973 - -1.9 363,973 - +0.2 363,973 - +0.2
Or see this region's nucleotide sequence