Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01580

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01570 and AMB_RS01575 are separated by 204 nucleotidesAMB_RS01575 and AMB_RS01580 are separated by 28 nucleotidesAMB_RS01580 and AMB_RS01585 overlap by 9 nucleotidesAMB_RS01585 and AMB_RS01590 are separated by 15 nucleotides AMB_RS01570: AMB_RS01570 - protein meaA, at 349,564 to 351,561 _RS01570 AMB_RS01575: AMB_RS01575 - arsenate reductase (glutaredoxin), at 351,766 to 352,113 _RS01575 AMB_RS01580: AMB_RS01580 - small-conductance mechanosensitive channel, at 352,142 to 353,422 _RS01580 AMB_RS01585: AMB_RS01585 - regulatory protein RecX, at 353,414 to 353,962 _RS01585 AMB_RS01590: AMB_RS01590 - multidrug ABC transporter permease, at 353,978 to 354,790 _RS01590 Position (kb) 352 353 354Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 351.256 kb on + strand, within AMB_RS01570at 351.257 kb on - strand, within AMB_RS01570at 351.398 kb on + strandat 351.399 kb on - strandat 351.481 kb on + strandat 351.481 kb on + strandat 351.481 kb on + strandat 351.481 kb on + strandat 351.481 kb on + strandat 351.482 kb on - strandat 351.482 kb on - strandat 351.496 kb on + strandat 351.496 kb on + strandat 351.496 kb on + strandat 351.609 kb on + strandat 351.613 kb on + strandat 351.614 kb on - strandat 351.614 kb on - strandat 351.706 kb on + strandat 351.706 kb on + strandat 351.706 kb on + strandat 351.706 kb on + strandat 351.706 kb on + strandat 351.707 kb on - strandat 351.707 kb on - strandat 351.767 kb on + strandat 351.767 kb on + strandat 352.011 kb on - strand, within AMB_RS01575at 352.059 kb on + strand, within AMB_RS01575at 352.060 kb on - strand, within AMB_RS01575at 352.091 kb on + strandat 352.091 kb on + strandat 352.091 kb on + strandat 352.091 kb on + strandat 352.091 kb on + strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.092 kb on - strandat 352.160 kb on - strandat 352.160 kb on - strandat 352.580 kb on + strand, within AMB_RS01580at 352.580 kb on + strand, within AMB_RS01580at 352.581 kb on - strand, within AMB_RS01580at 352.581 kb on - strand, within AMB_RS01580at 352.706 kb on + strand, within AMB_RS01580at 353.117 kb on + strand, within AMB_RS01580at 353.117 kb on + strand, within AMB_RS01580at 353.117 kb on + strand, within AMB_RS01580at 353.117 kb on + strand, within AMB_RS01580at 353.118 kb on - strand, within AMB_RS01580at 353.118 kb on - strand, within AMB_RS01580at 353.144 kb on + strand, within AMB_RS01580at 353.144 kb on + strand, within AMB_RS01580at 353.144 kb on + strand, within AMB_RS01580at 353.715 kb on + strand, within AMB_RS01585at 353.716 kb on - strand, within AMB_RS01585at 353.733 kb on + strand, within AMB_RS01585at 353.734 kb on - strand, within AMB_RS01585at 353.868 kb on + strand, within AMB_RS01585at 353.868 kb on + strand, within AMB_RS01585at 353.868 kb on + strand, within AMB_RS01585at 353.868 kb on + strand, within AMB_RS01585at 353.880 kb on + strand, within AMB_RS01585at 353.880 kb on + strand, within AMB_RS01585at 353.881 kb on - strand, within AMB_RS01585at 353.881 kb on - strand, within AMB_RS01585at 353.904 kb on + strand, within AMB_RS01585at 353.905 kb on - strand, within AMB_RS01585at 353.905 kb on - strand, within AMB_RS01585at 353.905 kb on - strand, within AMB_RS01585at 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.975 kb on - strandat 353.975 kb on - strandat 353.975 kb on - strandat 353.975 kb on - strandat 353.975 kb on - strandat 354.089 kb on + strand, within AMB_RS01590at 354.090 kb on - strand, within AMB_RS01590at 354.090 kb on - strand, within AMB_RS01590at 354.090 kb on - strand, within AMB_RS01590at 354.216 kb on + strand, within AMB_RS01590at 354.217 kb on - strand, within AMB_RS01590at 354.217 kb on - strand, within AMB_RS01590at 354.253 kb on + strand, within AMB_RS01590at 354.254 kb on - strand, within AMB_RS01590at 354.292 kb on + strand, within AMB_RS01590at 354.292 kb on + strand, within AMB_RS01590

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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351,256 + AMB_RS01570 0.85 -0.7
351,257 - AMB_RS01570 0.85 -0.2
351,398 + -3.0
351,399 - -1.2
351,481 + -1.9
351,481 + -1.2
351,481 + -1.1
351,481 + +0.1
351,481 + -1.4
351,482 - -0.1
351,482 - -0.5
351,496 + -1.3
351,496 + -0.5
351,496 + -0.8
351,609 + -4.0
351,613 + +0.2
351,614 - +0.3
351,614 - -1.3
351,706 + -1.6
351,706 + -2.0
351,706 + +0.8
351,706 + -0.6
351,706 + +0.2
351,707 - -2.0
351,707 - -0.2
351,767 + -1.0
351,767 + -0.7
352,011 - AMB_RS01575 0.70 +0.4
352,059 + AMB_RS01575 0.84 +0.3
352,060 - AMB_RS01575 0.84 -0.2
352,091 + +0.1
352,091 + -2.4
352,091 + +0.3
352,091 + -1.0
352,091 + -0.3
352,092 - +1.1
352,092 - -2.0
352,092 - +0.3
352,092 - -2.2
352,092 - -1.0
352,092 - +0.5
352,092 - -2.2
352,160 - +0.0
352,160 - +0.7
352,580 + AMB_RS01580 0.34 -0.1
352,580 + AMB_RS01580 0.34 -0.1
352,581 - AMB_RS01580 0.34 +0.2
352,581 - AMB_RS01580 0.34 -0.4
352,706 + AMB_RS01580 0.44 -3.4
353,117 + AMB_RS01580 0.76 +0.8
353,117 + AMB_RS01580 0.76 +0.5
353,117 + AMB_RS01580 0.76 -1.1
353,117 + AMB_RS01580 0.76 +0.7
353,118 - AMB_RS01580 0.76 -1.0
353,118 - AMB_RS01580 0.76 -2.6
353,144 + AMB_RS01580 0.78 -0.6
353,144 + AMB_RS01580 0.78 +0.3
353,144 + AMB_RS01580 0.78 -5.0
353,715 + AMB_RS01585 0.55 -1.1
353,716 - AMB_RS01585 0.55 +0.4
353,733 + AMB_RS01585 0.58 -0.4
353,734 - AMB_RS01585 0.58 -2.5
353,868 + AMB_RS01585 0.83 -0.5
353,868 + AMB_RS01585 0.83 +0.3
353,868 + AMB_RS01585 0.83 -1.1
353,868 + AMB_RS01585 0.83 -1.7
353,880 + AMB_RS01585 0.85 -1.2
353,880 + AMB_RS01585 0.85 +0.9
353,881 - AMB_RS01585 0.85 -0.7
353,881 - AMB_RS01585 0.85 -1.5
353,904 + AMB_RS01585 0.89 -1.9
353,905 - AMB_RS01585 0.89 -1.0
353,905 - AMB_RS01585 0.89 +0.3
353,905 - AMB_RS01585 0.89 -0.2
353,974 + -2.8
353,974 + +0.5
353,974 + -0.1
353,974 + +0.3
353,974 + -1.0
353,974 + +0.1
353,974 + -0.7
353,974 + +2.3
353,974 + +0.9
353,975 - -0.5
353,975 - -1.0
353,975 - +0.9
353,975 - +1.1
353,975 - -0.7
354,089 + AMB_RS01590 0.14 -0.5
354,090 - AMB_RS01590 0.14 -0.3
354,090 - AMB_RS01590 0.14 -0.2
354,090 - AMB_RS01590 0.14 +0.6
354,216 + AMB_RS01590 0.29 +0.2
354,217 - AMB_RS01590 0.29 -1.6
354,217 - AMB_RS01590 0.29 -2.3
354,253 + AMB_RS01590 0.34 -0.3
354,254 - AMB_RS01590 0.34 +0.4
354,292 + AMB_RS01590 0.39 -0.4
354,292 + AMB_RS01590 0.39 -0.7

Or see this region's nucleotide sequence