Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01560 and AMB_RS01565 are separated by 74 nucleotides AMB_RS01565 and AMB_RS01570 are separated by 215 nucleotides
AMB_RS01560: AMB_RS01560 - acyl-CoA dehydrogenase, at 346,356 to 348,017
_RS01560
AMB_RS01565: AMB_RS01565 - crotonyl-CoA carboxylase/reductase, at 348,092 to 349,348
_RS01565
AMB_RS01570: AMB_RS01570 - protein meaA, at 349,564 to 351,561
_RS01570
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.294 kb on + strand, within AMB_RS01560 at 347.296 kb on + strand, within AMB_RS01560 at 347.296 kb on + strand, within AMB_RS01560 at 347.297 kb on - strand, within AMB_RS01560 at 347.297 kb on - strand, within AMB_RS01560 at 347.297 kb on - strand, within AMB_RS01560 at 347.339 kb on + strand, within AMB_RS01560 at 347.339 kb on + strand, within AMB_RS01560 at 347.339 kb on + strand, within AMB_RS01560 at 347.339 kb on + strand, within AMB_RS01560 at 347.339 kb on + strand, within AMB_RS01560 at 347.359 kb on + strand, within AMB_RS01560 at 347.360 kb on - strand, within AMB_RS01560 at 347.713 kb on + strand, within AMB_RS01560 at 347.713 kb on + strand, within AMB_RS01560 at 347.713 kb on + strand, within AMB_RS01560 at 347.713 kb on + strand, within AMB_RS01560 at 347.713 kb on + strand, within AMB_RS01560 at 347.714 kb on - strand, within AMB_RS01560 at 347.714 kb on - strand, within AMB_RS01560 at 347.714 kb on - strand, within AMB_RS01560 at 347.714 kb on - strand, within AMB_RS01560 at 347.728 kb on + strand, within AMB_RS01560 at 347.729 kb on - strand, within AMB_RS01560 at 347.729 kb on - strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.851 kb on + strand at 347.852 kb on - strand at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.315 kb on + strand, within AMB_RS01565 at 348.317 kb on - strand, within AMB_RS01565 at 348.363 kb on + strand, within AMB_RS01565 at 348.528 kb on + strand, within AMB_RS01565 at 348.528 kb on + strand, within AMB_RS01565 at 348.528 kb on + strand, within AMB_RS01565 at 348.529 kb on - strand, within AMB_RS01565 at 348.529 kb on - strand, within AMB_RS01565 at 348.529 kb on - strand, within AMB_RS01565 at 348.813 kb on + strand, within AMB_RS01565 at 349.047 kb on + strand, within AMB_RS01565 at 349.047 kb on + strand, within AMB_RS01565 at 349.047 kb on + strand, within AMB_RS01565 at 349.048 kb on - strand, within AMB_RS01565 at 349.048 kb on - strand, within AMB_RS01565 at 349.048 kb on - strand, within AMB_RS01565 at 349.048 kb on - strand, within AMB_RS01565 at 349.048 kb on - strand, within AMB_RS01565 at 349.098 kb on + strand, within AMB_RS01565 at 349.099 kb on - strand, within AMB_RS01565 at 349.099 kb on - strand, within AMB_RS01565 at 349.146 kb on + strand, within AMB_RS01565 at 349.147 kb on - strand, within AMB_RS01565 at 349.147 kb on - strand, within AMB_RS01565 at 349.147 kb on - strand, within AMB_RS01565 at 349.272 kb on + strand at 349.272 kb on + strand at 349.272 kb on + strand at 349.272 kb on + strand at 349.272 kb on + strand at 349.272 kb on + strand at 349.272 kb on + strand at 349.273 kb on - strand at 349.273 kb on - strand at 349.273 kb on - strand at 349.273 kb on - strand at 349.273 kb on - strand at 349.273 kb on - strand at 349.273 kb on - strand at 349.273 kb on - strand at 349.351 kb on + strand at 349.351 kb on + strand at 349.352 kb on - strand at 349.409 kb on + strand at 349.421 kb on + strand at 349.422 kb on - strand at 349.630 kb on + strand at 349.630 kb on + strand at 349.630 kb on + strand at 349.630 kb on + strand at 349.631 kb on - strand at 349.631 kb on - strand at 349.738 kb on + strand at 349.739 kb on - strand at 349.851 kb on + strand, within AMB_RS01570 at 349.851 kb on + strand, within AMB_RS01570 at 349.851 kb on + strand, within AMB_RS01570 at 349.897 kb on + strand, within AMB_RS01570 at 349.897 kb on + strand, within AMB_RS01570 at 349.897 kb on + strand, within AMB_RS01570 at 349.898 kb on - strand, within AMB_RS01570 at 349.975 kb on + strand, within AMB_RS01570 at 349.975 kb on + strand, within AMB_RS01570 at 349.975 kb on + strand, within AMB_RS01570 at 349.975 kb on + strand, within AMB_RS01570 at 349.976 kb on - strand, within AMB_RS01570 at 349.976 kb on - strand, within AMB_RS01570 at 349.976 kb on - strand, within AMB_RS01570 at 349.976 kb on - strand, within AMB_RS01570 at 349.993 kb on + strand, within AMB_RS01570 at 349.993 kb on + strand, within AMB_RS01570 at 349.993 kb on + strand, within AMB_RS01570 at 349.993 kb on + strand, within AMB_RS01570 at 349.994 kb on - strand, within AMB_RS01570 at 349.994 kb on - strand, within AMB_RS01570 at 349.994 kb on - strand, within AMB_RS01570 at 349.994 kb on - strand, within AMB_RS01570 at 349.994 kb on - strand, within AMB_RS01570 at 349.994 kb on - strand, within AMB_RS01570 at 349.994 kb on - strand, within AMB_RS01570 at 349.995 kb on + strand, within AMB_RS01570 at 349.995 kb on + strand, within AMB_RS01570 at 349.995 kb on + strand, within AMB_RS01570 at 349.995 kb on + strand, within AMB_RS01570 at 349.996 kb on - strand, within AMB_RS01570 at 349.996 kb on - strand, within AMB_RS01570 at 350.051 kb on - strand, within AMB_RS01570 at 350.051 kb on - strand, within AMB_RS01570 at 350.051 kb on - strand, within AMB_RS01570 at 350.092 kb on + strand, within AMB_RS01570 at 350.093 kb on - strand, within AMB_RS01570 at 350.093 kb on - strand, within AMB_RS01570 at 350.093 kb on - strand, within AMB_RS01570 at 350.093 kb on - strand, within AMB_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 347,095 + AMB_RS01560 0.44 +0.3 347,095 + AMB_RS01560 0.44 -0.7 347,095 + AMB_RS01560 0.44 -3.4 347,095 + AMB_RS01560 0.44 -0.4 347,095 + AMB_RS01560 0.44 -1.2 347,095 + AMB_RS01560 0.44 -1.2 347,095 + AMB_RS01560 0.44 -0.2 347,095 + AMB_RS01560 0.44 +0.2 347,096 - AMB_RS01560 0.45 -1.1 347,096 - AMB_RS01560 0.45 -0.3 347,096 - AMB_RS01560 0.45 -1.9 347,096 - AMB_RS01560 0.45 -1.0 347,096 - AMB_RS01560 0.45 -1.2 347,096 - AMB_RS01560 0.45 +1.8 347,294 + AMB_RS01560 0.56 -0.8 347,296 + AMB_RS01560 0.57 +0.3 347,296 + AMB_RS01560 0.57 -2.1 347,297 - AMB_RS01560 0.57 -1.2 347,297 - AMB_RS01560 0.57 -1.0 347,297 - AMB_RS01560 0.57 +1.8 347,339 + AMB_RS01560 0.59 +1.5 347,339 + AMB_RS01560 0.59 -1.2 347,339 + AMB_RS01560 0.59 -2.7 347,339 + AMB_RS01560 0.59 -0.5 347,339 + AMB_RS01560 0.59 -0.9 347,359 + AMB_RS01560 0.60 -2.0 347,360 - AMB_RS01560 0.60 +0.3 347,713 + AMB_RS01560 0.82 +0.1 347,713 + AMB_RS01560 0.82 -0.1 347,713 + AMB_RS01560 0.82 -3.7 347,713 + AMB_RS01560 0.82 -0.1 347,713 + AMB_RS01560 0.82 +1.5 347,714 - AMB_RS01560 0.82 +1.0 347,714 - AMB_RS01560 0.82 -1.9 347,714 - AMB_RS01560 0.82 -1.5 347,714 - AMB_RS01560 0.82 -0.5 347,728 + AMB_RS01560 0.83 -0.6 347,729 - AMB_RS01560 0.83 -0.5 347,729 - AMB_RS01560 0.83 -1.3 347,833 + AMB_RS01560 0.89 -0.7 347,833 + AMB_RS01560 0.89 -2.2 347,833 + AMB_RS01560 0.89 -0.0 347,833 + AMB_RS01560 0.89 -1.2 347,833 + AMB_RS01560 0.89 +1.7 347,833 + AMB_RS01560 0.89 -0.1 347,833 + AMB_RS01560 0.89 +1.8 347,834 - AMB_RS01560 0.89 -3.4 347,834 - AMB_RS01560 0.89 -0.5 347,834 - AMB_RS01560 0.89 -1.6 347,834 - AMB_RS01560 0.89 -0.9 347,834 - AMB_RS01560 0.89 -0.1 347,834 - AMB_RS01560 0.89 -0.5 347,834 - AMB_RS01560 0.89 -2.3 347,834 - AMB_RS01560 0.89 -1.5 347,834 - AMB_RS01560 0.89 +1.8 347,834 - AMB_RS01560 0.89 -1.0 347,851 + +0.8 347,852 - +0.4 348,222 + AMB_RS01565 0.10 +0.8 348,222 + AMB_RS01565 0.10 +0.3 348,222 + AMB_RS01565 0.10 -0.5 348,222 + AMB_RS01565 0.10 -2.9 348,222 + AMB_RS01565 0.10 -0.8 348,222 + AMB_RS01565 0.10 -0.6 348,222 + AMB_RS01565 0.10 -0.5 348,223 - AMB_RS01565 0.10 +0.3 348,223 - AMB_RS01565 0.10 -0.9 348,223 - AMB_RS01565 0.10 -1.8 348,223 - AMB_RS01565 0.10 -0.8 348,223 - AMB_RS01565 0.10 +0.7 348,223 - AMB_RS01565 0.10 -0.7 348,223 - AMB_RS01565 0.10 +0.8 348,223 - AMB_RS01565 0.10 -0.2 348,223 - AMB_RS01565 0.10 +0.3 348,223 - AMB_RS01565 0.10 -0.5 348,223 - AMB_RS01565 0.10 -2.0 348,315 + AMB_RS01565 0.18 -1.1 348,317 - AMB_RS01565 0.18 +0.5 348,363 + AMB_RS01565 0.22 -2.8 348,528 + AMB_RS01565 0.35 +0.8 348,528 + AMB_RS01565 0.35 +0.1 348,528 + AMB_RS01565 0.35 -2.0 348,529 - AMB_RS01565 0.35 -3.1 348,529 - AMB_RS01565 0.35 -2.1 348,529 - AMB_RS01565 0.35 -0.9 348,813 + AMB_RS01565 0.57 -0.6 349,047 + AMB_RS01565 0.76 -1.2 349,047 + AMB_RS01565 0.76 -0.2 349,047 + AMB_RS01565 0.76 +0.3 349,048 - AMB_RS01565 0.76 -1.2 349,048 - AMB_RS01565 0.76 +0.1 349,048 - AMB_RS01565 0.76 -1.6 349,048 - AMB_RS01565 0.76 +0.8 349,048 - AMB_RS01565 0.76 +4.6 349,098 + AMB_RS01565 0.80 +1.8 349,099 - AMB_RS01565 0.80 -0.1 349,099 - AMB_RS01565 0.80 +0.3 349,146 + AMB_RS01565 0.84 +1.8 349,147 - AMB_RS01565 0.84 +0.9 349,147 - AMB_RS01565 0.84 +0.3 349,147 - AMB_RS01565 0.84 +1.8 349,272 + -1.8 349,272 + -0.1 349,272 + +0.8 349,272 + -0.5 349,272 + +0.0 349,272 + +0.6 349,272 + -2.0 349,273 - -0.7 349,273 - +0.2 349,273 - +0.3 349,273 - -0.2 349,273 - -0.6 349,273 - +0.3 349,273 - -0.7 349,273 - -0.2 349,351 + -1.9 349,351 + -0.5 349,352 - -0.2 349,409 + -0.2 349,421 + -0.5 349,422 - +0.3 349,630 + -1.7 349,630 + -1.7 349,630 + -2.2 349,630 + -2.3 349,631 - -0.3 349,631 - +0.3 349,738 + -1.9 349,739 - +0.1 349,851 + AMB_RS01570 0.14 +0.3 349,851 + AMB_RS01570 0.14 -1.3 349,851 + AMB_RS01570 0.14 -0.6 349,897 + AMB_RS01570 0.17 -0.5 349,897 + AMB_RS01570 0.17 +0.3 349,897 + AMB_RS01570 0.17 -0.7 349,898 - AMB_RS01570 0.17 -1.3 349,975 + AMB_RS01570 0.21 +2.0 349,975 + AMB_RS01570 0.21 +1.8 349,975 + AMB_RS01570 0.21 -0.0 349,975 + AMB_RS01570 0.21 -1.5 349,976 - AMB_RS01570 0.21 -1.3 349,976 - AMB_RS01570 0.21 -0.2 349,976 - AMB_RS01570 0.21 +0.1 349,976 - AMB_RS01570 0.21 -1.3 349,993 + AMB_RS01570 0.21 -3.0 349,993 + AMB_RS01570 0.21 -0.2 349,993 + AMB_RS01570 0.21 -2.4 349,993 + AMB_RS01570 0.21 -0.2 349,994 - AMB_RS01570 0.22 -1.0 349,994 - AMB_RS01570 0.22 -0.7 349,994 - AMB_RS01570 0.22 +1.8 349,994 - AMB_RS01570 0.22 +0.2 349,994 - AMB_RS01570 0.22 -0.1 349,994 - AMB_RS01570 0.22 -1.5 349,994 - AMB_RS01570 0.22 -0.2 349,995 + AMB_RS01570 0.22 +1.8 349,995 + AMB_RS01570 0.22 -1.2 349,995 + AMB_RS01570 0.22 -0.6 349,995 + AMB_RS01570 0.22 +0.3 349,996 - AMB_RS01570 0.22 -2.0 349,996 - AMB_RS01570 0.22 +0.8 350,051 - AMB_RS01570 0.24 -0.4 350,051 - AMB_RS01570 0.24 +0.0 350,051 - AMB_RS01570 0.24 -0.2 350,092 + AMB_RS01570 0.26 +0.6 350,093 - AMB_RS01570 0.26 -0.8 350,093 - AMB_RS01570 0.26 -1.2 350,093 - AMB_RS01570 0.26 -1.2 350,093 - AMB_RS01570 0.26 +0.6
Or see this region's nucleotide sequence