Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01540

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01535 and AMB_RS01540 overlap by 4 nucleotidesAMB_RS01540 and AMB_RS01545 overlap by 14 nucleotides AMB_RS01535: AMB_RS01535 - S41 family peptidase, at 339,965 to 341,314 _RS01535 AMB_RS01540: AMB_RS01540 - peptidase M23, at 341,311 to 342,828 _RS01540 AMB_RS01545: AMB_RS01545 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 342,815 to 344,377 _RS01545 Position (kb) 341 342 343Strain fitness (log2 ratio) -3 -2 -1 0 1at 341.391 kb on - strandat 341.391 kb on - strandat 341.497 kb on - strand, within AMB_RS01540at 341.497 kb on - strand, within AMB_RS01540at 341.657 kb on + strand, within AMB_RS01540at 341.658 kb on - strand, within AMB_RS01540

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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341,391 - -0.9
341,391 - -0.7
341,497 - AMB_RS01540 0.12 -3.0
341,497 - AMB_RS01540 0.12 +0.3
341,657 + AMB_RS01540 0.23 -2.3
341,658 - AMB_RS01540 0.23 -0.7

Or see this region's nucleotide sequence