Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01350 and AMB_RS01355 are separated by 221 nucleotides AMB_RS01355 and AMB_RS01360 are separated by 10 nucleotides AMB_RS01360 and AMB_RS01365 are separated by 102 nucleotides
AMB_RS01345: AMB_RS01345 - glycosyltransferase family 1 protein, at 297,090 to 298,133
_RS01345
AMB_RS01350: AMB_RS01350 - UDP-2,3-diacylglucosamine diphosphatase, at 298,061 to 298,897
_RS01350
AMB_RS01355: AMB_RS01355 - sphingosine kinase, at 299,119 to 300,000
_RS01355
AMB_RS01360: AMB_RS01360 - hypothetical protein, at 300,011 to 300,376
_RS01360
AMB_RS01365: AMB_RS01365 - nitroreductase, at 300,479 to 302,077
_RS01365
Position (kb) 299
300
301 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 298.125 kb on + strand at 298.125 kb on + strand at 298.125 kb on + strand at 298.125 kb on + strand at 298.125 kb on + strand at 298.233 kb on + strand, within AMB_RS01350 at 298.234 kb on - strand, within AMB_RS01350 at 298.234 kb on - strand, within AMB_RS01350 at 298.347 kb on + strand, within AMB_RS01350 at 298.347 kb on + strand, within AMB_RS01350 at 298.347 kb on + strand, within AMB_RS01350 at 298.347 kb on + strand, within AMB_RS01350 at 298.348 kb on - strand, within AMB_RS01350 at 298.348 kb on - strand, within AMB_RS01350 at 298.348 kb on - strand, within AMB_RS01350 at 298.348 kb on - strand, within AMB_RS01350 at 298.348 kb on - strand, within AMB_RS01350 at 298.461 kb on + strand, within AMB_RS01350 at 298.461 kb on + strand, within AMB_RS01350 at 298.461 kb on + strand, within AMB_RS01350 at 298.461 kb on + strand, within AMB_RS01350 at 298.462 kb on - strand, within AMB_RS01350 at 298.462 kb on - strand, within AMB_RS01350 at 298.497 kb on + strand, within AMB_RS01350 at 298.497 kb on + strand, within AMB_RS01350 at 298.768 kb on - strand, within AMB_RS01350 at 298.768 kb on - strand, within AMB_RS01350 at 298.768 kb on - strand, within AMB_RS01350 at 298.940 kb on - strand at 299.035 kb on - strand at 299.057 kb on - strand at 299.605 kb on + strand, within AMB_RS01355 at 299.606 kb on - strand, within AMB_RS01355 at 299.606 kb on - strand, within AMB_RS01355 at 299.606 kb on - strand, within AMB_RS01355 at 299.681 kb on - strand, within AMB_RS01355 at 299.719 kb on + strand, within AMB_RS01355 at 299.719 kb on + strand, within AMB_RS01355 at 299.719 kb on + strand, within AMB_RS01355 at 299.960 kb on + strand at 299.960 kb on + strand at 299.960 kb on + strand at 299.960 kb on + strand at 299.961 kb on - strand at 299.961 kb on - strand at 299.961 kb on - strand at 300.012 kb on + strand at 300.013 kb on - strand at 300.013 kb on - strand at 300.282 kb on + strand, within AMB_RS01360 at 300.282 kb on + strand, within AMB_RS01360 at 300.282 kb on + strand, within AMB_RS01360 at 300.282 kb on + strand, within AMB_RS01360 at 300.283 kb on - strand, within AMB_RS01360 at 300.283 kb on - strand, within AMB_RS01360 at 300.283 kb on - strand, within AMB_RS01360 at 300.405 kb on + strand at 300.405 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.426 kb on + strand at 300.427 kb on - strand at 300.427 kb on - strand at 300.427 kb on - strand at 300.428 kb on + strand at 300.428 kb on + strand at 300.428 kb on + strand at 300.428 kb on + strand at 300.428 kb on + strand at 300.428 kb on + strand at 300.428 kb on + strand at 300.429 kb on - strand at 300.429 kb on - strand at 300.429 kb on - strand at 300.429 kb on - strand at 300.429 kb on - strand at 300.429 kb on - strand at 300.478 kb on + strand at 300.478 kb on + strand at 300.478 kb on + strand at 300.479 kb on - strand at 300.542 kb on + strand at 300.866 kb on + strand, within AMB_RS01365 at 300.867 kb on - strand, within AMB_RS01365 at 300.867 kb on - strand, within AMB_RS01365 at 300.867 kb on - strand, within AMB_RS01365 at 300.872 kb on + strand, within AMB_RS01365 at 300.872 kb on + strand, within AMB_RS01365 at 300.873 kb on - strand, within AMB_RS01365 at 300.992 kb on + strand, within AMB_RS01365 at 300.992 kb on + strand, within AMB_RS01365 at 300.992 kb on + strand, within AMB_RS01365 at 300.992 kb on + strand, within AMB_RS01365 at 300.993 kb on - strand, within AMB_RS01365
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 298,125 + -0.9 298,125 + +0.1 298,125 + -0.5 298,125 + -0.3 298,125 + -2.7 298,233 + AMB_RS01350 0.21 -4.6 298,234 - AMB_RS01350 0.21 -1.7 298,234 - AMB_RS01350 0.21 -0.3 298,347 + AMB_RS01350 0.34 +1.9 298,347 + AMB_RS01350 0.34 -0.1 298,347 + AMB_RS01350 0.34 -0.1 298,347 + AMB_RS01350 0.34 +0.8 298,348 - AMB_RS01350 0.34 +1.3 298,348 - AMB_RS01350 0.34 -0.5 298,348 - AMB_RS01350 0.34 -0.7 298,348 - AMB_RS01350 0.34 -0.1 298,348 - AMB_RS01350 0.34 -0.5 298,461 + AMB_RS01350 0.48 +0.8 298,461 + AMB_RS01350 0.48 -1.5 298,461 + AMB_RS01350 0.48 -2.2 298,461 + AMB_RS01350 0.48 +0.3 298,462 - AMB_RS01350 0.48 -1.6 298,462 - AMB_RS01350 0.48 +1.9 298,497 + AMB_RS01350 0.52 -0.5 298,497 + AMB_RS01350 0.52 -1.5 298,768 - AMB_RS01350 0.84 -0.5 298,768 - AMB_RS01350 0.84 -2.2 298,768 - AMB_RS01350 0.84 +1.9 298,940 - -2.8 299,035 - +0.8 299,057 - -0.9 299,605 + AMB_RS01355 0.55 -0.5 299,606 - AMB_RS01355 0.55 -1.5 299,606 - AMB_RS01355 0.55 -0.4 299,606 - AMB_RS01355 0.55 +0.7 299,681 - AMB_RS01355 0.64 -0.7 299,719 + AMB_RS01355 0.68 +0.2 299,719 + AMB_RS01355 0.68 -1.1 299,719 + AMB_RS01355 0.68 -0.7 299,960 + -1.8 299,960 + -1.4 299,960 + +0.9 299,960 + -0.9 299,961 - +0.2 299,961 - +0.3 299,961 - -0.9 300,012 + +0.5 300,013 - +0.7 300,013 - -1.1 300,282 + AMB_RS01360 0.74 -0.3 300,282 + AMB_RS01360 0.74 -0.2 300,282 + AMB_RS01360 0.74 +0.3 300,282 + AMB_RS01360 0.74 +1.3 300,283 - AMB_RS01360 0.74 +0.9 300,283 - AMB_RS01360 0.74 -0.8 300,283 - AMB_RS01360 0.74 -0.3 300,405 + -0.1 300,405 + +1.2 300,426 + -0.4 300,426 + -1.4 300,426 + -2.9 300,426 + -0.3 300,426 + -1.2 300,426 + -0.7 300,426 + -2.1 300,426 + -1.0 300,426 + +1.9 300,426 + -2.1 300,426 + +3.9 300,426 + -0.1 300,426 + -0.2 300,427 - -1.6 300,427 - +0.5 300,427 - -0.9 300,428 + +0.9 300,428 + +0.3 300,428 + -0.2 300,428 + -1.2 300,428 + -0.1 300,428 + -1.7 300,428 + -0.7 300,429 - -1.9 300,429 - -2.2 300,429 - -2.1 300,429 - -3.3 300,429 - +0.3 300,429 - -4.5 300,478 + -1.6 300,478 + +0.3 300,478 + -0.5 300,479 - -2.8 300,542 + +0.8 300,866 + AMB_RS01365 0.24 -1.3 300,867 - AMB_RS01365 0.24 -0.0 300,867 - AMB_RS01365 0.24 -0.5 300,867 - AMB_RS01365 0.24 +1.3 300,872 + AMB_RS01365 0.25 +1.9 300,872 + AMB_RS01365 0.25 -0.2 300,873 - AMB_RS01365 0.25 +0.9 300,992 + AMB_RS01365 0.32 +1.9 300,992 + AMB_RS01365 0.32 -0.7 300,992 + AMB_RS01365 0.32 +0.8 300,992 + AMB_RS01365 0.32 -1.8 300,993 - AMB_RS01365 0.32 +0.3
Or see this region's nucleotide sequence