Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01145 and AMB_RS01150 are separated by 48 nucleotides AMB_RS01150 and AMB_RS01155 are separated by 13 nucleotides AMB_RS01155 and AMB_RS01160 overlap by 14 nucleotides AMB_RS01160 and AMB_RS01165 are separated by 44 nucleotides AMB_RS01165 and AMB_RS01170 are separated by 11 nucleotides
AMB_RS01145: AMB_RS01145 - dioxygenase, at 256,208 to 256,975
_RS01145
AMB_RS01150: AMB_RS01150 - hemerythrin, at 257,024 to 257,431
_RS01150
AMB_RS01155: AMB_RS01155 - hypothetical protein, at 257,445 to 257,831
_RS01155
AMB_RS01160: AMB_RS01160 - glycosyltransferase, at 257,818 to 258,912
_RS01160
AMB_RS01165: AMB_RS01165 - hypothetical protein, at 258,957 to 259,316
_RS01165
AMB_RS01170: AMB_RS01170 - copper export protein, at 259,328 to 260,911
_RS01170
Position (kb) 257
258
259 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 256.961 kb on + strand at 256.962 kb on - strand at 256.991 kb on + strand at 256.991 kb on + strand at 256.991 kb on + strand at 256.991 kb on + strand at 256.992 kb on - strand at 256.992 kb on - strand at 256.992 kb on - strand at 256.992 kb on - strand at 256.992 kb on - strand at 257.007 kb on + strand at 257.007 kb on + strand at 257.008 kb on - strand at 257.030 kb on + strand at 257.030 kb on + strand at 257.031 kb on - strand at 257.031 kb on - strand at 257.180 kb on + strand, within AMB_RS01150 at 257.180 kb on + strand, within AMB_RS01150 at 257.573 kb on + strand, within AMB_RS01155 at 257.573 kb on + strand, within AMB_RS01155 at 257.574 kb on - strand, within AMB_RS01155 at 257.574 kb on - strand, within AMB_RS01155 at 257.669 kb on + strand, within AMB_RS01155 at 257.669 kb on + strand, within AMB_RS01155 at 257.670 kb on - strand, within AMB_RS01155 at 257.731 kb on - strand, within AMB_RS01155 at 257.756 kb on - strand, within AMB_RS01155 at 257.829 kb on + strand at 257.829 kb on + strand at 257.829 kb on + strand at 257.830 kb on - strand at 257.833 kb on - strand at 257.859 kb on - strand at 257.918 kb on + strand at 257.919 kb on - strand at 257.990 kb on + strand, within AMB_RS01160 at 258.044 kb on + strand, within AMB_RS01160 at 258.044 kb on + strand, within AMB_RS01160 at 258.044 kb on + strand, within AMB_RS01160 at 258.045 kb on - strand, within AMB_RS01160 at 258.194 kb on + strand, within AMB_RS01160 at 258.194 kb on + strand, within AMB_RS01160 at 258.195 kb on - strand, within AMB_RS01160 at 258.276 kb on + strand, within AMB_RS01160 at 258.359 kb on + strand, within AMB_RS01160 at 258.359 kb on + strand, within AMB_RS01160 at 258.359 kb on + strand, within AMB_RS01160 at 258.360 kb on - strand, within AMB_RS01160 at 258.360 kb on - strand, within AMB_RS01160 at 258.435 kb on - strand, within AMB_RS01160 at 258.840 kb on + strand at 258.841 kb on - strand at 258.841 kb on - strand at 258.929 kb on + strand at 258.929 kb on + strand at 258.929 kb on + strand at 258.929 kb on + strand at 258.929 kb on + strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.932 kb on - strand at 258.932 kb on - strand at 259.002 kb on - strand, within AMB_RS01165 at 259.102 kb on - strand, within AMB_RS01165 at 259.102 kb on - strand, within AMB_RS01165 at 259.236 kb on + strand, within AMB_RS01165 at 259.236 kb on + strand, within AMB_RS01165 at 259.236 kb on + strand, within AMB_RS01165 at 259.237 kb on - strand, within AMB_RS01165 at 259.237 kb on - strand, within AMB_RS01165 at 259.237 kb on - strand, within AMB_RS01165 at 259.238 kb on + strand, within AMB_RS01165 at 259.729 kb on - strand, within AMB_RS01170 at 259.790 kb on + strand, within AMB_RS01170 at 259.790 kb on + strand, within AMB_RS01170 at 259.790 kb on + strand, within AMB_RS01170 at 259.793 kb on + strand, within AMB_RS01170 at 259.793 kb on + strand, within AMB_RS01170 at 259.793 kb on + strand, within AMB_RS01170 at 259.793 kb on + strand, within AMB_RS01170 at 259.794 kb on - strand, within AMB_RS01170 at 259.794 kb on - strand, within AMB_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 256,961 + +0.3 256,962 - -0.3 256,991 + -0.9 256,991 + -1.3 256,991 + -0.1 256,991 + +0.5 256,992 - +1.9 256,992 - -0.4 256,992 - -0.4 256,992 - -2.7 256,992 - -0.1 257,007 + +0.3 257,007 + -0.1 257,008 - -0.0 257,030 + -0.6 257,030 + -1.8 257,031 - -1.3 257,031 - -3.8 257,180 + AMB_RS01150 0.38 +1.9 257,180 + AMB_RS01150 0.38 -0.6 257,573 + AMB_RS01155 0.33 -0.3 257,573 + AMB_RS01155 0.33 +0.9 257,574 - AMB_RS01155 0.33 -0.4 257,574 - AMB_RS01155 0.33 +0.3 257,669 + AMB_RS01155 0.58 +0.6 257,669 + AMB_RS01155 0.58 -0.5 257,670 - AMB_RS01155 0.58 +2.0 257,731 - AMB_RS01155 0.74 -1.1 257,756 - AMB_RS01155 0.80 -0.4 257,829 + +0.4 257,829 + +0.5 257,829 + +0.1 257,830 - -1.6 257,833 - +0.3 257,859 - -1.8 257,918 + -2.5 257,919 - -3.1 257,990 + AMB_RS01160 0.16 -0.7 258,044 + AMB_RS01160 0.21 -3.9 258,044 + AMB_RS01160 0.21 -1.3 258,044 + AMB_RS01160 0.21 -2.4 258,045 - AMB_RS01160 0.21 -1.3 258,194 + AMB_RS01160 0.34 -2.4 258,194 + AMB_RS01160 0.34 +0.9 258,195 - AMB_RS01160 0.34 -2.4 258,276 + AMB_RS01160 0.42 +1.4 258,359 + AMB_RS01160 0.49 -1.6 258,359 + AMB_RS01160 0.49 -1.1 258,359 + AMB_RS01160 0.49 -1.8 258,360 - AMB_RS01160 0.49 +0.3 258,360 - AMB_RS01160 0.49 -3.0 258,435 - AMB_RS01160 0.56 -2.5 258,840 + -0.7 258,841 - -0.1 258,841 - -2.1 258,929 + -0.8 258,929 + -0.9 258,929 + +0.6 258,929 + +0.9 258,929 + -0.2 258,930 - -1.8 258,930 - -0.7 258,930 - +0.4 258,930 - -1.2 258,930 - -1.0 258,930 - -1.9 258,930 - -0.4 258,930 - -4.5 258,931 + -1.3 258,931 + -0.2 258,931 + -2.8 258,931 + -0.6 258,931 + -0.3 258,931 + -1.6 258,931 + +1.9 258,931 + -1.7 258,932 - -1.3 258,932 - -1.9 259,002 - AMB_RS01165 0.12 -1.2 259,102 - AMB_RS01165 0.40 -0.7 259,102 - AMB_RS01165 0.40 -0.6 259,236 + AMB_RS01165 0.78 -0.3 259,236 + AMB_RS01165 0.78 -2.9 259,236 + AMB_RS01165 0.78 -0.1 259,237 - AMB_RS01165 0.78 -0.7 259,237 - AMB_RS01165 0.78 +0.7 259,237 - AMB_RS01165 0.78 -2.2 259,238 + AMB_RS01165 0.78 -0.4 259,729 - AMB_RS01170 0.25 -0.7 259,790 + AMB_RS01170 0.29 -1.2 259,790 + AMB_RS01170 0.29 -1.5 259,790 + AMB_RS01170 0.29 -2.4 259,793 + AMB_RS01170 0.29 +0.4 259,793 + AMB_RS01170 0.29 +0.9 259,793 + AMB_RS01170 0.29 -1.3 259,793 + AMB_RS01170 0.29 +1.9 259,794 - AMB_RS01170 0.29 -0.4 259,794 - AMB_RS01170 0.29 -1.4
Or see this region's nucleotide sequence