Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01125 and AMB_RS01130 are separated by 215 nucleotides AMB_RS01130 and AMB_RS01135 are separated by 77 nucleotides AMB_RS01135 and AMB_RS01140 overlap by 40 nucleotides
AMB_RS01125: AMB_RS01125 - phosphomethylpyrimidine synthase, at 252,087 to 253,928
_RS01125
AMB_RS01130: AMB_RS01130 - hypothetical protein, at 254,144 to 254,941
_RS01130
AMB_RS01135: AMB_RS01135 - hypothetical protein, at 255,019 to 255,207
_RS01135
AMB_RS01140: AMB_RS01140 - LysR family transcriptional regulator, at 255,168 to 256,097
_RS01140
Position (kb) 254
255 Strain fitness (log2 ratio) -2
-1
0
1 at 254.358 kb on + strand, within AMB_RS01130 at 254.602 kb on - strand, within AMB_RS01130 at 254.602 kb on - strand, within AMB_RS01130 at 254.619 kb on + strand, within AMB_RS01130 at 254.619 kb on + strand, within AMB_RS01130 at 254.658 kb on + strand, within AMB_RS01130 at 254.658 kb on + strand, within AMB_RS01130 at 254.659 kb on - strand, within AMB_RS01130 at 254.820 kb on + strand, within AMB_RS01130 at 254.826 kb on + strand, within AMB_RS01130 at 254.826 kb on + strand, within AMB_RS01130 at 254.826 kb on + strand, within AMB_RS01130 at 254.826 kb on + strand, within AMB_RS01130 at 254.827 kb on - strand, within AMB_RS01130 at 254.914 kb on + strand at 254.914 kb on + strand at 254.915 kb on - strand at 254.965 kb on + strand at 254.965 kb on + strand at 254.966 kb on - strand at 254.966 kb on - strand at 254.967 kb on - strand at 255.026 kb on + strand at 255.026 kb on + strand at 255.027 kb on - strand at 255.027 kb on - strand at 255.033 kb on + strand at 255.034 kb on - strand at 255.205 kb on + strand at 255.205 kb on + strand at 255.205 kb on + strand at 255.205 kb on + strand at 255.205 kb on + strand at 255.205 kb on + strand at 255.205 kb on + strand at 255.205 kb on + strand at 255.206 kb on - strand at 255.206 kb on - strand at 255.283 kb on + strand, within AMB_RS01140 at 255.284 kb on - strand, within AMB_RS01140 at 255.316 kb on + strand, within AMB_RS01140 at 255.316 kb on + strand, within AMB_RS01140 at 255.316 kb on + strand, within AMB_RS01140 at 255.316 kb on + strand, within AMB_RS01140 at 255.316 kb on + strand, within AMB_RS01140 at 255.317 kb on - strand, within AMB_RS01140 at 255.317 kb on - strand, within AMB_RS01140 at 255.317 kb on - strand, within AMB_RS01140 at 255.317 kb on - strand, within AMB_RS01140 at 255.317 kb on - strand, within AMB_RS01140 at 255.317 kb on - strand, within AMB_RS01140 at 255.317 kb on - strand, within AMB_RS01140 at 255.317 kb on - strand, within AMB_RS01140 at 255.567 kb on - strand, within AMB_RS01140 at 255.583 kb on + strand, within AMB_RS01140 at 255.584 kb on - strand, within AMB_RS01140 at 255.901 kb on + strand, within AMB_RS01140
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 254,358 + AMB_RS01130 0.27 -0.7 254,602 - AMB_RS01130 0.57 -1.3 254,602 - AMB_RS01130 0.57 +0.1 254,619 + AMB_RS01130 0.60 -0.7 254,619 + AMB_RS01130 0.60 -0.9 254,658 + AMB_RS01130 0.64 -0.9 254,658 + AMB_RS01130 0.64 +0.3 254,659 - AMB_RS01130 0.65 +0.3 254,820 + AMB_RS01130 0.85 -0.3 254,826 + AMB_RS01130 0.85 -2.2 254,826 + AMB_RS01130 0.85 -0.3 254,826 + AMB_RS01130 0.85 -1.3 254,826 + AMB_RS01130 0.85 -1.4 254,827 - AMB_RS01130 0.86 +0.9 254,914 + -1.6 254,914 + -1.9 254,915 - +0.2 254,965 + -2.7 254,965 + +0.0 254,966 - -0.1 254,966 - -0.1 254,967 - -0.1 255,026 + -0.3 255,026 + -0.4 255,027 - +0.3 255,027 - +0.3 255,033 + -1.1 255,034 - -0.1 255,205 + -0.4 255,205 + -0.9 255,205 + -1.8 255,205 + -2.0 255,205 + +0.9 255,205 + -0.3 255,205 + +0.3 255,205 + -0.1 255,206 - -0.4 255,206 - -1.1 255,283 + AMB_RS01140 0.12 -0.1 255,284 - AMB_RS01140 0.12 -0.1 255,316 + AMB_RS01140 0.16 -0.6 255,316 + AMB_RS01140 0.16 -0.4 255,316 + AMB_RS01140 0.16 -0.8 255,316 + AMB_RS01140 0.16 -1.9 255,316 + AMB_RS01140 0.16 +0.4 255,317 - AMB_RS01140 0.16 -0.7 255,317 - AMB_RS01140 0.16 -1.3 255,317 - AMB_RS01140 0.16 -0.4 255,317 - AMB_RS01140 0.16 +0.3 255,317 - AMB_RS01140 0.16 -0.1 255,317 - AMB_RS01140 0.16 +1.3 255,317 - AMB_RS01140 0.16 -0.7 255,317 - AMB_RS01140 0.16 -1.1 255,567 - AMB_RS01140 0.43 -1.4 255,583 + AMB_RS01140 0.45 -0.1 255,584 - AMB_RS01140 0.45 -0.7 255,901 + AMB_RS01140 0.79 -0.9
Or see this region's nucleotide sequence