Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00880 and AMB_RS00885 are separated by 203 nucleotides AMB_RS00885 and AMB_RS00890 are separated by 5 nucleotides
AMB_RS00880: AMB_RS00880 - 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase, at 197,883 to 199,430
_RS00880
AMB_RS00885: AMB_RS00885 - 2,3-epoxybenzoyl-CoA dihydrolase, at 199,634 to 201,286
_RS00885
AMB_RS00890: AMB_RS00890 - benzoyl-CoA 2,3-epoxidase subunit BoxB, at 201,292 to 202,713
_RS00890
Position (kb) 199
200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.090 kb on - strand, within AMB_RS00880 at 199.351 kb on - strand at 199.428 kb on + strand at 199.595 kb on + strand at 199.664 kb on + strand at 199.666 kb on - strand at 199.769 kb on + strand at 199.770 kb on - strand at 199.770 kb on - strand at 199.770 kb on - strand at 199.796 kb on + strand at 199.796 kb on + strand at 199.892 kb on - strand, within AMB_RS00885 at 199.892 kb on - strand, within AMB_RS00885 at 199.930 kb on + strand, within AMB_RS00885 at 199.930 kb on + strand, within AMB_RS00885 at 199.930 kb on + strand, within AMB_RS00885 at 199.930 kb on + strand, within AMB_RS00885 at 200.000 kb on + strand, within AMB_RS00885 at 200.000 kb on + strand, within AMB_RS00885 at 200.000 kb on + strand, within AMB_RS00885 at 200.000 kb on + strand, within AMB_RS00885 at 200.000 kb on + strand, within AMB_RS00885 at 200.001 kb on - strand, within AMB_RS00885 at 200.001 kb on - strand, within AMB_RS00885 at 200.001 kb on - strand, within AMB_RS00885 at 200.001 kb on - strand, within AMB_RS00885 at 200.001 kb on - strand, within AMB_RS00885 at 200.063 kb on + strand, within AMB_RS00885 at 200.063 kb on + strand, within AMB_RS00885 at 200.064 kb on - strand, within AMB_RS00885 at 200.064 kb on - strand, within AMB_RS00885 at 200.064 kb on - strand, within AMB_RS00885 at 200.064 kb on - strand, within AMB_RS00885 at 200.064 kb on - strand, within AMB_RS00885 at 200.208 kb on + strand, within AMB_RS00885 at 200.208 kb on + strand, within AMB_RS00885 at 200.208 kb on + strand, within AMB_RS00885 at 200.208 kb on + strand, within AMB_RS00885 at 200.208 kb on + strand, within AMB_RS00885 at 200.209 kb on - strand, within AMB_RS00885 at 200.209 kb on - strand, within AMB_RS00885 at 200.209 kb on - strand, within AMB_RS00885 at 200.264 kb on - strand, within AMB_RS00885 at 200.399 kb on + strand, within AMB_RS00885 at 200.399 kb on + strand, within AMB_RS00885 at 200.399 kb on + strand, within AMB_RS00885 at 200.399 kb on + strand, within AMB_RS00885 at 200.399 kb on + strand, within AMB_RS00885 at 200.400 kb on - strand, within AMB_RS00885 at 200.446 kb on + strand, within AMB_RS00885 at 200.446 kb on + strand, within AMB_RS00885 at 200.446 kb on + strand, within AMB_RS00885 at 200.519 kb on + strand, within AMB_RS00885 at 200.636 kb on + strand, within AMB_RS00885 at 200.697 kb on - strand, within AMB_RS00885 at 200.697 kb on - strand, within AMB_RS00885 at 200.697 kb on - strand, within AMB_RS00885 at 201.242 kb on + strand at 201.267 kb on - strand at 201.284 kb on + strand at 201.284 kb on + strand at 201.307 kb on + strand at 201.307 kb on + strand at 201.308 kb on - strand at 201.388 kb on + strand at 201.388 kb on + strand at 201.388 kb on + strand at 201.388 kb on + strand at 201.389 kb on - strand at 201.389 kb on - strand at 201.390 kb on + strand at 201.390 kb on + strand at 201.390 kb on + strand at 201.391 kb on - strand at 201.391 kb on - strand at 201.442 kb on + strand, within AMB_RS00890 at 201.442 kb on + strand, within AMB_RS00890 at 201.442 kb on + strand, within AMB_RS00890 at 201.442 kb on + strand, within AMB_RS00890 at 201.443 kb on - strand, within AMB_RS00890 at 201.443 kb on - strand, within AMB_RS00890 at 201.443 kb on - strand, within AMB_RS00890 at 201.443 kb on - strand, within AMB_RS00890 at 201.511 kb on + strand, within AMB_RS00890 at 201.610 kb on + strand, within AMB_RS00890 at 201.710 kb on - strand, within AMB_RS00890 at 201.710 kb on - strand, within AMB_RS00890 at 201.772 kb on + strand, within AMB_RS00890 at 201.773 kb on - strand, within AMB_RS00890 at 201.773 kb on - strand, within AMB_RS00890 at 201.773 kb on - strand, within AMB_RS00890 at 201.943 kb on + strand, within AMB_RS00890 at 201.944 kb on - strand, within AMB_RS00890 at 202.183 kb on + strand, within AMB_RS00890 at 202.219 kb on + strand, within AMB_RS00890 at 202.219 kb on + strand, within AMB_RS00890 at 202.220 kb on - strand, within AMB_RS00890 at 202.220 kb on - strand, within AMB_RS00890
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 199,090 - AMB_RS00880 0.78 -1.1 199,351 - -1.7 199,428 + -0.3 199,595 + +0.3 199,664 + +0.1 199,666 - -0.5 199,769 + -0.9 199,770 - -0.3 199,770 - +0.4 199,770 - -2.6 199,796 + -0.2 199,796 + -0.7 199,892 - AMB_RS00885 0.16 -0.5 199,892 - AMB_RS00885 0.16 -0.1 199,930 + AMB_RS00885 0.18 -0.7 199,930 + AMB_RS00885 0.18 -0.1 199,930 + AMB_RS00885 0.18 +0.3 199,930 + AMB_RS00885 0.18 +0.3 200,000 + AMB_RS00885 0.22 +0.3 200,000 + AMB_RS00885 0.22 -2.9 200,000 + AMB_RS00885 0.22 +0.2 200,000 + AMB_RS00885 0.22 -0.6 200,000 + AMB_RS00885 0.22 -1.7 200,001 - AMB_RS00885 0.22 -0.3 200,001 - AMB_RS00885 0.22 -1.7 200,001 - AMB_RS00885 0.22 +0.4 200,001 - AMB_RS00885 0.22 +2.7 200,001 - AMB_RS00885 0.22 +0.0 200,063 + AMB_RS00885 0.26 -0.7 200,063 + AMB_RS00885 0.26 +0.2 200,064 - AMB_RS00885 0.26 -0.7 200,064 - AMB_RS00885 0.26 -0.4 200,064 - AMB_RS00885 0.26 +0.9 200,064 - AMB_RS00885 0.26 -1.3 200,064 - AMB_RS00885 0.26 -0.0 200,208 + AMB_RS00885 0.35 -0.1 200,208 + AMB_RS00885 0.35 -0.6 200,208 + AMB_RS00885 0.35 -0.5 200,208 + AMB_RS00885 0.35 -0.7 200,208 + AMB_RS00885 0.35 -1.3 200,209 - AMB_RS00885 0.35 -0.1 200,209 - AMB_RS00885 0.35 -0.1 200,209 - AMB_RS00885 0.35 +0.9 200,264 - AMB_RS00885 0.38 -1.1 200,399 + AMB_RS00885 0.46 -0.0 200,399 + AMB_RS00885 0.46 +1.9 200,399 + AMB_RS00885 0.46 +0.6 200,399 + AMB_RS00885 0.46 -0.1 200,399 + AMB_RS00885 0.46 +1.9 200,400 - AMB_RS00885 0.46 +0.7 200,446 + AMB_RS00885 0.49 -0.9 200,446 + AMB_RS00885 0.49 -0.3 200,446 + AMB_RS00885 0.49 -0.4 200,519 + AMB_RS00885 0.54 -0.4 200,636 + AMB_RS00885 0.61 -0.0 200,697 - AMB_RS00885 0.64 -0.1 200,697 - AMB_RS00885 0.64 +0.0 200,697 - AMB_RS00885 0.64 -0.2 201,242 + -0.7 201,267 - -0.4 201,284 + -0.2 201,284 + -0.3 201,307 + -0.7 201,307 + -0.9 201,308 - -3.4 201,388 + -0.7 201,388 + -1.1 201,388 + -0.1 201,388 + -0.6 201,389 - +0.1 201,389 - -0.5 201,390 + -0.1 201,390 + -0.0 201,390 + +0.9 201,391 - -1.3 201,391 - -0.9 201,442 + AMB_RS00890 0.11 -0.5 201,442 + AMB_RS00890 0.11 +0.3 201,442 + AMB_RS00890 0.11 -0.7 201,442 + AMB_RS00890 0.11 +0.1 201,443 - AMB_RS00890 0.11 +0.3 201,443 - AMB_RS00890 0.11 -1.3 201,443 - AMB_RS00890 0.11 -2.2 201,443 - AMB_RS00890 0.11 -0.4 201,511 + AMB_RS00890 0.15 -1.1 201,610 + AMB_RS00890 0.22 +1.5 201,710 - AMB_RS00890 0.29 -1.1 201,710 - AMB_RS00890 0.29 -0.9 201,772 + AMB_RS00890 0.34 -0.5 201,773 - AMB_RS00890 0.34 -1.3 201,773 - AMB_RS00890 0.34 -0.3 201,773 - AMB_RS00890 0.34 -1.1 201,943 + AMB_RS00890 0.46 +0.8 201,944 - AMB_RS00890 0.46 -1.4 202,183 + AMB_RS00890 0.63 -2.6 202,219 + AMB_RS00890 0.65 +0.7 202,219 + AMB_RS00890 0.65 -1.1 202,220 - AMB_RS00890 0.65 -0.2 202,220 - AMB_RS00890 0.65 -2.4
Or see this region's nucleotide sequence