Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00780 and AMB_RS00785 overlap by 14 nucleotides AMB_RS00785 and AMB_RS00790 are separated by 1 nucleotides
AMB_RS00780: AMB_RS00780 - GTP 3',8-cyclase MoaA, at 177,163 to 178,149
_RS00780
AMB_RS00785: AMB_RS00785 - hypothetical protein, at 178,136 to 179,317
_RS00785
AMB_RS00790: AMB_RS00790 - MBOAT family protein, at 179,319 to 180,770
_RS00790
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.360 kb on - strand, within AMB_RS00785 at 178.360 kb on - strand, within AMB_RS00785 at 178.641 kb on + strand, within AMB_RS00785 at 178.641 kb on + strand, within AMB_RS00785 at 178.641 kb on + strand, within AMB_RS00785 at 178.737 kb on + strand, within AMB_RS00785 at 178.737 kb on + strand, within AMB_RS00785 at 178.737 kb on + strand, within AMB_RS00785 at 178.737 kb on + strand, within AMB_RS00785 at 178.737 kb on + strand, within AMB_RS00785 at 178.737 kb on + strand, within AMB_RS00785 at 178.737 kb on + strand, within AMB_RS00785 at 178.737 kb on + strand, within AMB_RS00785 at 178.738 kb on - strand, within AMB_RS00785 at 178.738 kb on - strand, within AMB_RS00785 at 178.738 kb on - strand, within AMB_RS00785 at 178.738 kb on - strand, within AMB_RS00785 at 178.839 kb on + strand, within AMB_RS00785 at 178.839 kb on + strand, within AMB_RS00785 at 178.839 kb on + strand, within AMB_RS00785 at 178.839 kb on + strand, within AMB_RS00785 at 178.840 kb on - strand, within AMB_RS00785 at 178.840 kb on - strand, within AMB_RS00785 at 178.840 kb on - strand, within AMB_RS00785 at 178.840 kb on - strand, within AMB_RS00785 at 178.968 kb on + strand, within AMB_RS00785 at 178.968 kb on + strand, within AMB_RS00785 at 179.209 kb on - strand at 179.222 kb on - strand at 179.330 kb on - strand at 179.330 kb on - strand at 179.332 kb on + strand at 179.332 kb on + strand at 179.332 kb on + strand at 179.757 kb on + strand, within AMB_RS00790 at 179.757 kb on + strand, within AMB_RS00790 at 179.757 kb on + strand, within AMB_RS00790 at 179.757 kb on + strand, within AMB_RS00790 at 179.757 kb on + strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.758 kb on - strand, within AMB_RS00790 at 179.878 kb on + strand, within AMB_RS00790 at 179.879 kb on - strand, within AMB_RS00790 at 179.879 kb on - strand, within AMB_RS00790 at 179.884 kb on + strand, within AMB_RS00790 at 179.884 kb on + strand, within AMB_RS00790 at 179.885 kb on - strand, within AMB_RS00790 at 179.885 kb on - strand, within AMB_RS00790 at 179.885 kb on - strand, within AMB_RS00790 at 179.912 kb on + strand, within AMB_RS00790 at 179.912 kb on + strand, within AMB_RS00790 at 179.913 kb on - strand, within AMB_RS00790 at 179.913 kb on - strand, within AMB_RS00790 at 179.913 kb on - strand, within AMB_RS00790 at 179.913 kb on - strand, within AMB_RS00790 at 179.913 kb on - strand, within AMB_RS00790 at 179.913 kb on - strand, within AMB_RS00790 at 179.913 kb on - strand, within AMB_RS00790 at 179.953 kb on + strand, within AMB_RS00790 at 179.954 kb on - strand, within AMB_RS00790 at 180.040 kb on + strand, within AMB_RS00790 at 180.040 kb on + strand, within AMB_RS00790 at 180.040 kb on + strand, within AMB_RS00790 at 180.041 kb on - strand, within AMB_RS00790 at 180.041 kb on - strand, within AMB_RS00790 at 180.041 kb on - strand, within AMB_RS00790 at 180.041 kb on - strand, within AMB_RS00790 at 180.055 kb on + strand, within AMB_RS00790 at 180.133 kb on + strand, within AMB_RS00790 at 180.133 kb on + strand, within AMB_RS00790 at 180.133 kb on + strand, within AMB_RS00790 at 180.133 kb on + strand, within AMB_RS00790 at 180.133 kb on + strand, within AMB_RS00790 at 180.133 kb on + strand, within AMB_RS00790 at 180.133 kb on + strand, within AMB_RS00790 at 180.134 kb on - strand, within AMB_RS00790 at 180.134 kb on - strand, within AMB_RS00790 at 180.134 kb on - strand, within AMB_RS00790 at 180.134 kb on - strand, within AMB_RS00790 at 180.134 kb on - strand, within AMB_RS00790 at 180.134 kb on - strand, within AMB_RS00790 at 180.134 kb on - strand, within AMB_RS00790
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 178,360 - AMB_RS00785 0.19 -2.1 178,360 - AMB_RS00785 0.19 -0.0 178,641 + AMB_RS00785 0.43 -0.1 178,641 + AMB_RS00785 0.43 -2.0 178,641 + AMB_RS00785 0.43 -1.4 178,737 + AMB_RS00785 0.51 -0.2 178,737 + AMB_RS00785 0.51 -0.6 178,737 + AMB_RS00785 0.51 +0.1 178,737 + AMB_RS00785 0.51 -1.0 178,737 + AMB_RS00785 0.51 +0.8 178,737 + AMB_RS00785 0.51 -0.7 178,737 + AMB_RS00785 0.51 -0.4 178,737 + AMB_RS00785 0.51 -1.1 178,738 - AMB_RS00785 0.51 +1.9 178,738 - AMB_RS00785 0.51 -2.9 178,738 - AMB_RS00785 0.51 +0.3 178,738 - AMB_RS00785 0.51 -0.6 178,839 + AMB_RS00785 0.59 -0.4 178,839 + AMB_RS00785 0.59 -0.7 178,839 + AMB_RS00785 0.59 +0.0 178,839 + AMB_RS00785 0.59 -0.4 178,840 - AMB_RS00785 0.60 -0.4 178,840 - AMB_RS00785 0.60 -0.4 178,840 - AMB_RS00785 0.60 -0.7 178,840 - AMB_RS00785 0.60 -2.9 178,968 + AMB_RS00785 0.70 -0.9 178,968 + AMB_RS00785 0.70 -0.6 179,209 - -1.8 179,222 - -1.4 179,330 - -0.9 179,330 - -0.4 179,332 + -1.6 179,332 + +0.9 179,332 + -0.4 179,757 + AMB_RS00790 0.30 +0.9 179,757 + AMB_RS00790 0.30 +1.9 179,757 + AMB_RS00790 0.30 -0.5 179,757 + AMB_RS00790 0.30 +0.8 179,757 + AMB_RS00790 0.30 -1.4 179,758 - AMB_RS00790 0.30 +0.9 179,758 - AMB_RS00790 0.30 +0.2 179,758 - AMB_RS00790 0.30 -2.8 179,758 - AMB_RS00790 0.30 -0.4 179,758 - AMB_RS00790 0.30 +0.2 179,758 - AMB_RS00790 0.30 -2.0 179,758 - AMB_RS00790 0.30 -0.3 179,758 - AMB_RS00790 0.30 +0.3 179,758 - AMB_RS00790 0.30 +0.9 179,758 - AMB_RS00790 0.30 +0.3 179,758 - AMB_RS00790 0.30 -0.1 179,878 + AMB_RS00790 0.38 +0.9 179,879 - AMB_RS00790 0.39 -1.8 179,879 - AMB_RS00790 0.39 -0.2 179,884 + AMB_RS00790 0.39 -1.0 179,884 + AMB_RS00790 0.39 -1.4 179,885 - AMB_RS00790 0.39 +0.1 179,885 - AMB_RS00790 0.39 -0.1 179,885 - AMB_RS00790 0.39 -0.4 179,912 + AMB_RS00790 0.41 -0.8 179,912 + AMB_RS00790 0.41 -1.0 179,913 - AMB_RS00790 0.41 +0.0 179,913 - AMB_RS00790 0.41 -0.5 179,913 - AMB_RS00790 0.41 -0.1 179,913 - AMB_RS00790 0.41 -0.4 179,913 - AMB_RS00790 0.41 -1.3 179,913 - AMB_RS00790 0.41 -0.4 179,913 - AMB_RS00790 0.41 -0.2 179,953 + AMB_RS00790 0.44 -1.3 179,954 - AMB_RS00790 0.44 +0.9 180,040 + AMB_RS00790 0.50 -2.6 180,040 + AMB_RS00790 0.50 -1.4 180,040 + AMB_RS00790 0.50 -1.9 180,041 - AMB_RS00790 0.50 -0.1 180,041 - AMB_RS00790 0.50 +0.3 180,041 - AMB_RS00790 0.50 -1.3 180,041 - AMB_RS00790 0.50 -0.4 180,055 + AMB_RS00790 0.51 +0.4 180,133 + AMB_RS00790 0.56 -0.5 180,133 + AMB_RS00790 0.56 +1.5 180,133 + AMB_RS00790 0.56 -1.3 180,133 + AMB_RS00790 0.56 -2.4 180,133 + AMB_RS00790 0.56 -1.3 180,133 + AMB_RS00790 0.56 -1.1 180,133 + AMB_RS00790 0.56 +1.9 180,134 - AMB_RS00790 0.56 +1.7 180,134 - AMB_RS00790 0.56 +0.4 180,134 - AMB_RS00790 0.56 -1.5 180,134 - AMB_RS00790 0.56 +0.6 180,134 - AMB_RS00790 0.56 -0.0 180,134 - AMB_RS00790 0.56 +0.9 180,134 - AMB_RS00790 0.56 -0.3
Or see this region's nucleotide sequence