Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00705

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00700 and AMB_RS00705 overlap by 1 nucleotidesAMB_RS00705 and AMB_RS00710 are separated by 4 nucleotidesAMB_RS00710 and AMB_RS00715 are separated by 12 nucleotides AMB_RS00700: AMB_RS00700 - nucleoside-diphosphate sugar epimerase, at 159,690 to 160,751 _RS00700 AMB_RS00705: AMB_RS00705 - class I SAM-dependent methyltransferase, at 160,751 to 161,995 _RS00705 AMB_RS00710: AMB_RS00710 - cupin domain-containing protein, at 162,000 to 162,479 _RS00710 AMB_RS00715: AMB_RS00715 - glycosyltransferase family 2 protein, at 162,492 to 163,199 _RS00715 Position (kb) 160 161 162Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 159.832 kb on + strand, within AMB_RS00700at 159.938 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.943 kb on + strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 159.944 kb on - strand, within AMB_RS00700at 160.006 kb on + strand, within AMB_RS00700at 160.006 kb on + strand, within AMB_RS00700at 160.006 kb on + strand, within AMB_RS00700at 160.006 kb on + strand, within AMB_RS00700at 160.006 kb on + strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.007 kb on - strand, within AMB_RS00700at 160.040 kb on - strand, within AMB_RS00700at 160.083 kb on - strand, within AMB_RS00700at 160.096 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.180 kb on + strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.181 kb on - strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.216 kb on + strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.217 kb on - strand, within AMB_RS00700at 160.255 kb on + strand, within AMB_RS00700at 160.255 kb on + strand, within AMB_RS00700at 160.411 kb on + strand, within AMB_RS00700at 160.411 kb on + strand, within AMB_RS00700at 160.412 kb on - strand, within AMB_RS00700at 160.412 kb on - strand, within AMB_RS00700at 160.412 kb on - strand, within AMB_RS00700at 160.414 kb on + strand, within AMB_RS00700at 160.414 kb on + strand, within AMB_RS00700at 160.414 kb on + strand, within AMB_RS00700at 160.414 kb on + strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.415 kb on - strand, within AMB_RS00700at 160.450 kb on + strand, within AMB_RS00700at 160.450 kb on + strand, within AMB_RS00700at 160.450 kb on + strand, within AMB_RS00700at 160.451 kb on - strand, within AMB_RS00700at 160.451 kb on - strand, within AMB_RS00700at 160.516 kb on + strand, within AMB_RS00700at 160.516 kb on + strand, within AMB_RS00700at 160.577 kb on + strand, within AMB_RS00700at 160.630 kb on + strand, within AMB_RS00700at 160.909 kb on + strand, within AMB_RS00705at 160.909 kb on + strand, within AMB_RS00705at 160.909 kb on + strand, within AMB_RS00705at 160.926 kb on + strand, within AMB_RS00705at 160.926 kb on + strand, within AMB_RS00705at 160.995 kb on + strand, within AMB_RS00705at 160.995 kb on + strand, within AMB_RS00705at 160.995 kb on + strand, within AMB_RS00705at 160.995 kb on + strand, within AMB_RS00705at 160.995 kb on + strand, within AMB_RS00705at 160.995 kb on + strand, within AMB_RS00705at 161.316 kb on + strand, within AMB_RS00705at 161.334 kb on + strand, within AMB_RS00705at 161.341 kb on + strand, within AMB_RS00705at 161.372 kb on + strand, within AMB_RS00705at 161.372 kb on + strand, within AMB_RS00705at 161.372 kb on + strand, within AMB_RS00705at 161.376 kb on + strand, within AMB_RS00705at 161.376 kb on + strand, within AMB_RS00705at 161.376 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.722 kb on - strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.002 kb on - strandat 162.073 kb on + strand, within AMB_RS00710at 162.232 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.257 kb on - strand, within AMB_RS00710at 162.262 kb on + strand, within AMB_RS00710at 162.262 kb on + strand, within AMB_RS00710at 162.344 kb on + strand, within AMB_RS00710at 162.344 kb on + strand, within AMB_RS00710at 162.389 kb on + strand, within AMB_RS00710at 162.463 kb on + strandat 162.463 kb on + strandat 162.572 kb on - strand, within AMB_RS00715at 162.586 kb on + strand, within AMB_RS00715at 162.586 kb on + strand, within AMB_RS00715at 162.587 kb on - strand, within AMB_RS00715at 162.605 kb on - strand, within AMB_RS00715at 162.712 kb on + strand, within AMB_RS00715at 162.712 kb on + strand, within AMB_RS00715at 162.713 kb on - strand, within AMB_RS00715at 162.721 kb on + strand, within AMB_RS00715at 162.722 kb on - strand, within AMB_RS00715at 162.804 kb on + strand, within AMB_RS00715at 162.805 kb on - strand, within AMB_RS00715at 162.814 kb on + strand, within AMB_RS00715at 162.889 kb on + strand, within AMB_RS00715at 162.889 kb on + strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.904 kb on + strand, within AMB_RS00715at 162.904 kb on + strand, within AMB_RS00715at 162.905 kb on - strand, within AMB_RS00715at 162.966 kb on + strand, within AMB_RS00715at 162.966 kb on + strand, within AMB_RS00715at 162.967 kb on - strand, within AMB_RS00715

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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159,832 + AMB_RS00700 0.13 -0.9
159,938 + AMB_RS00700 0.23 -1.1
159,943 + AMB_RS00700 0.24 -2.3
159,943 + AMB_RS00700 0.24 +1.9
159,943 + AMB_RS00700 0.24 +0.0
159,943 + AMB_RS00700 0.24 +0.7
159,943 + AMB_RS00700 0.24 -0.1
159,943 + AMB_RS00700 0.24 -4.5
159,944 - AMB_RS00700 0.24 +0.5
159,944 - AMB_RS00700 0.24 -0.1
159,944 - AMB_RS00700 0.24 -1.4
159,944 - AMB_RS00700 0.24 +0.3
159,944 - AMB_RS00700 0.24 -1.1
159,944 - AMB_RS00700 0.24 -0.7
160,006 + AMB_RS00700 0.30 +0.2
160,006 + AMB_RS00700 0.30 -0.7
160,006 + AMB_RS00700 0.30 -0.9
160,006 + AMB_RS00700 0.30 -0.0
160,006 + AMB_RS00700 0.30 +0.9
160,007 - AMB_RS00700 0.30 -0.4
160,007 - AMB_RS00700 0.30 -1.4
160,007 - AMB_RS00700 0.30 -0.6
160,007 - AMB_RS00700 0.30 +0.9
160,007 - AMB_RS00700 0.30 -0.6
160,007 - AMB_RS00700 0.30 -1.1
160,007 - AMB_RS00700 0.30 -0.5
160,007 - AMB_RS00700 0.30 +0.5
160,040 - AMB_RS00700 0.33 -0.1
160,083 - AMB_RS00700 0.37 -0.4
160,096 + AMB_RS00700 0.38 -0.5
160,180 + AMB_RS00700 0.46 -0.7
160,180 + AMB_RS00700 0.46 -2.8
160,180 + AMB_RS00700 0.46 -0.8
160,180 + AMB_RS00700 0.46 -0.9
160,180 + AMB_RS00700 0.46 -0.6
160,180 + AMB_RS00700 0.46 -0.1
160,180 + AMB_RS00700 0.46 -0.6
160,180 + AMB_RS00700 0.46 -0.3
160,180 + AMB_RS00700 0.46 +0.3
160,181 - AMB_RS00700 0.46 -1.8
160,181 - AMB_RS00700 0.46 -0.4
160,181 - AMB_RS00700 0.46 +0.3
160,181 - AMB_RS00700 0.46 -0.9
160,181 - AMB_RS00700 0.46 -1.1
160,181 - AMB_RS00700 0.46 -3.8
160,216 + AMB_RS00700 0.50 +0.1
160,216 + AMB_RS00700 0.50 +1.9
160,216 + AMB_RS00700 0.50 -2.1
160,216 + AMB_RS00700 0.50 -0.9
160,216 + AMB_RS00700 0.50 -1.7
160,216 + AMB_RS00700 0.50 -0.3
160,217 - AMB_RS00700 0.50 -0.1
160,217 - AMB_RS00700 0.50 +1.9
160,217 - AMB_RS00700 0.50 -2.8
160,217 - AMB_RS00700 0.50 -1.1
160,217 - AMB_RS00700 0.50 -0.7
160,217 - AMB_RS00700 0.50 -0.3
160,217 - AMB_RS00700 0.50 -1.9
160,217 - AMB_RS00700 0.50 +0.2
160,255 + AMB_RS00700 0.53 +0.1
160,255 + AMB_RS00700 0.53 +0.6
160,411 + AMB_RS00700 0.68 +0.5
160,411 + AMB_RS00700 0.68 +0.9
160,412 - AMB_RS00700 0.68 -0.9
160,412 - AMB_RS00700 0.68 -0.3
160,412 - AMB_RS00700 0.68 -1.7
160,414 + AMB_RS00700 0.68 +0.4
160,414 + AMB_RS00700 0.68 -1.0
160,414 + AMB_RS00700 0.68 -0.4
160,414 + AMB_RS00700 0.68 -2.2
160,415 - AMB_RS00700 0.68 +0.3
160,415 - AMB_RS00700 0.68 +0.9
160,415 - AMB_RS00700 0.68 +1.9
160,415 - AMB_RS00700 0.68 -0.9
160,415 - AMB_RS00700 0.68 -1.3
160,415 - AMB_RS00700 0.68 +0.9
160,415 - AMB_RS00700 0.68 +0.9
160,450 + AMB_RS00700 0.72 +0.4
160,450 + AMB_RS00700 0.72 +0.3
160,450 + AMB_RS00700 0.72 -0.0
160,451 - AMB_RS00700 0.72 -0.7
160,451 - AMB_RS00700 0.72 +0.3
160,516 + AMB_RS00700 0.78 -1.4
160,516 + AMB_RS00700 0.78 +1.9
160,577 + AMB_RS00700 0.84 -0.9
160,630 + AMB_RS00700 0.89 +4.3
160,909 + AMB_RS00705 0.13 +0.3
160,909 + AMB_RS00705 0.13 -0.4
160,909 + AMB_RS00705 0.13 +0.3
160,926 + AMB_RS00705 0.14 +1.9
160,926 + AMB_RS00705 0.14 -0.7
160,995 + AMB_RS00705 0.20 -1.3
160,995 + AMB_RS00705 0.20 +0.3
160,995 + AMB_RS00705 0.20 -0.5
160,995 + AMB_RS00705 0.20 -1.6
160,995 + AMB_RS00705 0.20 -1.7
160,995 + AMB_RS00705 0.20 +0.2
161,316 + AMB_RS00705 0.45 -2.8
161,334 + AMB_RS00705 0.47 +3.2
161,341 + AMB_RS00705 0.47 -1.0
161,372 + AMB_RS00705 0.50 -1.8
161,372 + AMB_RS00705 0.50 -2.9
161,372 + AMB_RS00705 0.50 -1.6
161,376 + AMB_RS00705 0.50 -0.7
161,376 + AMB_RS00705 0.50 +0.0
161,376 + AMB_RS00705 0.50 +2.2
161,721 + AMB_RS00705 0.78 +0.3
161,721 + AMB_RS00705 0.78 +0.3
161,721 + AMB_RS00705 0.78 -1.1
161,721 + AMB_RS00705 0.78 -1.3
161,721 + AMB_RS00705 0.78 -0.7
161,721 + AMB_RS00705 0.78 -0.1
161,721 + AMB_RS00705 0.78 -1.4
161,721 + AMB_RS00705 0.78 -1.6
161,722 - AMB_RS00705 0.78 -0.7
161,766 + AMB_RS00705 0.82 -1.1
161,766 + AMB_RS00705 0.82 +0.9
161,766 + AMB_RS00705 0.82 -0.7
161,766 + AMB_RS00705 0.82 +0.1
161,766 + AMB_RS00705 0.82 -3.3
161,772 + AMB_RS00705 0.82 -1.6
161,772 + AMB_RS00705 0.82 +0.7
161,772 + AMB_RS00705 0.82 -1.9
161,772 + AMB_RS00705 0.82 -0.2
161,772 + AMB_RS00705 0.82 +0.2
161,772 + AMB_RS00705 0.82 -0.9
161,772 + AMB_RS00705 0.82 -0.4
161,772 + AMB_RS00705 0.82 -3.1
162,001 + +1.6
162,001 + -0.4
162,001 + +1.9
162,001 + -0.4
162,001 + -1.5
162,001 + +0.3
162,001 + -0.4
162,002 - +0.3
162,073 + AMB_RS00710 0.15 -1.4
162,232 + AMB_RS00710 0.48 -1.4
162,256 + AMB_RS00710 0.53 -2.1
162,256 + AMB_RS00710 0.53 -0.9
162,256 + AMB_RS00710 0.53 -0.7
162,256 + AMB_RS00710 0.53 -0.2
162,256 + AMB_RS00710 0.53 +1.9
162,256 + AMB_RS00710 0.53 -0.4
162,256 + AMB_RS00710 0.53 +0.3
162,256 + AMB_RS00710 0.53 -0.6
162,257 - AMB_RS00710 0.54 -0.1
162,262 + AMB_RS00710 0.55 +0.1
162,262 + AMB_RS00710 0.55 -0.9
162,344 + AMB_RS00710 0.72 -0.6
162,344 + AMB_RS00710 0.72 -1.3
162,389 + AMB_RS00710 0.81 -2.3
162,463 + -1.6
162,463 + -4.2
162,572 - AMB_RS00715 0.11 -3.3
162,586 + AMB_RS00715 0.13 +0.0
162,586 + AMB_RS00715 0.13 -0.3
162,587 - AMB_RS00715 0.13 -0.9
162,605 - AMB_RS00715 0.16 -2.1
162,712 + AMB_RS00715 0.31 +0.0
162,712 + AMB_RS00715 0.31 +0.2
162,713 - AMB_RS00715 0.31 -1.7
162,721 + AMB_RS00715 0.32 +0.3
162,722 - AMB_RS00715 0.32 -1.1
162,804 + AMB_RS00715 0.44 -1.1
162,805 - AMB_RS00715 0.44 +0.3
162,814 + AMB_RS00715 0.45 -2.1
162,889 + AMB_RS00715 0.56 -2.4
162,889 + AMB_RS00715 0.56 +0.3
162,890 - AMB_RS00715 0.56 -1.9
162,890 - AMB_RS00715 0.56 -0.1
162,890 - AMB_RS00715 0.56 -0.9
162,904 + AMB_RS00715 0.58 +0.3
162,904 + AMB_RS00715 0.58 -0.4
162,905 - AMB_RS00715 0.58 -1.1
162,966 + AMB_RS00715 0.67 +0.0
162,966 + AMB_RS00715 0.67 -0.1
162,967 - AMB_RS00715 0.67 +1.3

Or see this region's nucleotide sequence