Strain Fitness in Escherichia coli BW25113 around b0861

Experiment: Spectinomycin 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntartJ and artM are separated by 290 nucleotidesartM and artQ overlap by 1 nucleotidesartQ and artI are separated by 6 nucleotides b0860: artJ - arginine transporter subunit (NCBI), at 899,067 to 899,798 artJ b0861: artM - arginine transporter subunit (NCBI), at 900,089 to 900,757 artM b0862: artQ - arginine transporter subunit (NCBI), at 900,757 to 901,473 artQ b0863: artI - arginine transporter subunit (NCBI), at 901,480 to 902,211 artI Position (kb) 900 901Strain fitness (log2 ratio) -2 -1 0 1 2at 899.181 kb on + strand, within artJat 899.189 kb on - strand, within artJat 899.189 kb on - strand, within artJat 899.335 kb on + strand, within artJat 899.487 kb on - strand, within artJat 899.497 kb on + strand, within artJat 899.497 kb on + strand, within artJat 899.515 kb on - strand, within artJat 899.520 kb on - strand, within artJat 899.522 kb on + strand, within artJat 899.522 kb on + strand, within artJat 899.684 kb on + strand, within artJat 899.846 kb on - strandat 900.015 kb on + strandat 900.140 kb on - strandat 900.140 kb on - strandat 900.193 kb on + strand, within artMat 900.258 kb on - strand, within artMat 900.266 kb on - strand, within artMat 900.270 kb on - strand, within artMat 900.330 kb on - strand, within artMat 900.330 kb on - strand, within artMat 900.445 kb on + strand, within artMat 900.596 kb on - strand, within artMat 900.596 kb on - strand, within artMat 900.611 kb on - strand, within artMat 900.611 kb on - strand, within artMat 900.706 kb on + strandat 900.873 kb on + strand, within artQat 901.049 kb on + strand, within artQat 901.059 kb on + strand, within artQat 901.088 kb on + strand, within artQat 901.191 kb on + strand, within artQat 901.191 kb on + strand, within artQat 901.555 kb on - strand, within artIat 901.590 kb on - strand, within artIat 901.590 kb on - strand, within artIat 901.669 kb on - strand, within artIat 901.669 kb on - strand, within artI

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.00625 mg/ml
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899,181 + artJ b0860 0.16 -0.9
899,189 - artJ b0860 0.17 +0.2
899,189 - artJ b0860 0.17 +1.5
899,335 + artJ b0860 0.37 +0.8
899,487 - artJ b0860 0.57 +0.7
899,497 + artJ b0860 0.59 +0.1
899,497 + artJ b0860 0.59 -0.0
899,515 - artJ b0860 0.61 +1.8
899,520 - artJ b0860 0.62 -0.7
899,522 + artJ b0860 0.62 -0.1
899,522 + artJ b0860 0.62 +0.1
899,684 + artJ b0860 0.84 +0.1
899,846 - +0.5
900,015 + +0.4
900,140 - +0.5
900,140 - -0.3
900,193 + artM b0861 0.16 -0.5
900,258 - artM b0861 0.25 -0.1
900,266 - artM b0861 0.26 -1.2
900,270 - artM b0861 0.27 -0.8
900,330 - artM b0861 0.36 +0.3
900,330 - artM b0861 0.36 -0.3
900,445 + artM b0861 0.53 -0.2
900,596 - artM b0861 0.76 -2.1
900,596 - artM b0861 0.76 -0.8
900,611 - artM b0861 0.78 +0.1
900,611 - artM b0861 0.78 -1.1
900,706 + -1.1
900,873 + artQ b0862 0.16 +0.2
901,049 + artQ b0862 0.41 +0.5
901,059 + artQ b0862 0.42 +0.5
901,088 + artQ b0862 0.46 +0.3
901,191 + artQ b0862 0.61 -1.5
901,191 + artQ b0862 0.61 -0.5
901,555 - artI b0863 0.10 +0.3
901,590 - artI b0863 0.15 +1.1
901,590 - artI b0863 0.15 +0.0
901,669 - artI b0863 0.26 -1.5
901,669 - artI b0863 0.26 +0.2

Or see this region's nucleotide sequence