Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4426

Experiment: m.b. Lomefloxacin 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4425 and Echvi_4426 overlap by 4 nucleotidesEchvi_4426 and Echvi_4427 are separated by 3 nucleotides Echvi_4425: Echvi_4425 - RND family efflux transporter, MFP subunit, at 5,292,596 to 5,293,759 _4425 Echvi_4426: Echvi_4426 - Outer membrane protein, at 5,293,756 to 5,295,111 _4426 Echvi_4427: Echvi_4427 - Transcriptional regulator, at 5,295,115 to 5,295,720 _4427 Position (kb) 5293 5294 5295 5296Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5292.760 kb on - strand, within Echvi_4425at 5292.765 kb on + strand, within Echvi_4425at 5292.765 kb on + strand, within Echvi_4425at 5292.765 kb on + strand, within Echvi_4425at 5292.765 kb on + strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.779 kb on - strand, within Echvi_4425at 5292.846 kb on - strand, within Echvi_4425at 5292.856 kb on + strand, within Echvi_4425at 5292.857 kb on - strand, within Echvi_4425at 5292.897 kb on - strand, within Echvi_4425at 5292.897 kb on - strand, within Echvi_4425at 5293.010 kb on + strand, within Echvi_4425at 5293.011 kb on - strand, within Echvi_4425at 5293.016 kb on + strand, within Echvi_4425at 5293.016 kb on + strand, within Echvi_4425at 5293.017 kb on - strand, within Echvi_4425at 5293.017 kb on - strand, within Echvi_4425at 5293.020 kb on + strand, within Echvi_4425at 5293.020 kb on + strand, within Echvi_4425at 5293.020 kb on + strand, within Echvi_4425at 5293.020 kb on + strand, within Echvi_4425at 5293.021 kb on - strand, within Echvi_4425at 5293.031 kb on + strand, within Echvi_4425at 5293.032 kb on - strand, within Echvi_4425at 5293.047 kb on + strand, within Echvi_4425at 5293.047 kb on + strand, within Echvi_4425at 5293.047 kb on + strand, within Echvi_4425at 5293.048 kb on - strand, within Echvi_4425at 5293.132 kb on + strand, within Echvi_4425at 5293.141 kb on - strand, within Echvi_4425at 5293.230 kb on + strand, within Echvi_4425at 5293.230 kb on + strand, within Echvi_4425at 5293.230 kb on + strand, within Echvi_4425at 5293.230 kb on + strand, within Echvi_4425at 5293.361 kb on + strand, within Echvi_4425at 5293.361 kb on + strand, within Echvi_4425at 5293.361 kb on + strand, within Echvi_4425at 5293.361 kb on + strand, within Echvi_4425at 5293.362 kb on - strand, within Echvi_4425at 5293.394 kb on + strand, within Echvi_4425at 5293.410 kb on - strand, within Echvi_4425at 5293.623 kb on + strand, within Echvi_4425at 5293.624 kb on - strand, within Echvi_4425at 5293.730 kb on - strandat 5293.730 kb on - strandat 5293.736 kb on - strandat 5293.736 kb on - strandat 5293.736 kb on - strandat 5293.744 kb on - strandat 5293.744 kb on - strandat 5293.744 kb on - strandat 5293.745 kb on + strandat 5293.762 kb on + strandat 5293.763 kb on - strandat 5293.763 kb on - strandat 5293.765 kb on + strandat 5293.823 kb on + strandat 5293.823 kb on + strandat 5293.847 kb on - strandat 5293.885 kb on + strandat 5293.886 kb on - strandat 5293.919 kb on + strand, within Echvi_4426at 5293.954 kb on + strand, within Echvi_4426at 5293.955 kb on - strand, within Echvi_4426at 5293.974 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.125 kb on - strand, within Echvi_4426at 5294.125 kb on - strand, within Echvi_4426at 5294.125 kb on - strand, within Echvi_4426at 5294.145 kb on + strand, within Echvi_4426at 5294.205 kb on - strand, within Echvi_4426at 5294.234 kb on + strand, within Echvi_4426at 5294.267 kb on - strand, within Echvi_4426at 5294.329 kb on + strand, within Echvi_4426at 5294.329 kb on + strand, within Echvi_4426at 5294.484 kb on - strand, within Echvi_4426at 5294.697 kb on - strand, within Echvi_4426at 5294.778 kb on - strand, within Echvi_4426at 5295.016 kb on + strandat 5295.135 kb on + strandat 5295.137 kb on + strandat 5295.168 kb on + strandat 5295.168 kb on + strandat 5295.168 kb on + strandat 5295.168 kb on + strandat 5295.202 kb on + strand, within Echvi_4427at 5295.211 kb on + strand, within Echvi_4427at 5295.315 kb on + strand, within Echvi_4427at 5295.316 kb on - strand, within Echvi_4427at 5295.316 kb on - strand, within Echvi_4427at 5295.316 kb on - strand, within Echvi_4427at 5295.447 kb on - strand, within Echvi_4427at 5295.468 kb on - strand, within Echvi_4427at 5295.558 kb on + strand, within Echvi_4427at 5295.602 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.700 kb on + strandat 5295.701 kb on - strandat 5295.962 kb on + strandat 5295.994 kb on + strandat 5296.088 kb on + strandat 5296.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0125 mM
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5,292,760 - Echvi_4425 0.14 +2.1
5,292,765 + Echvi_4425 0.15 +0.5
5,292,765 + Echvi_4425 0.15 +0.8
5,292,765 + Echvi_4425 0.15 -0.6
5,292,765 + Echvi_4425 0.15 +1.6
5,292,766 - Echvi_4425 0.15 +0.6
5,292,766 - Echvi_4425 0.15 +0.5
5,292,766 - Echvi_4425 0.15 +1.3
5,292,766 - Echvi_4425 0.15 +1.8
5,292,766 - Echvi_4425 0.15 +1.1
5,292,766 - Echvi_4425 0.15 -0.2
5,292,766 - Echvi_4425 0.15 +0.2
5,292,766 - Echvi_4425 0.15 +1.3
5,292,766 - Echvi_4425 0.15 +0.8
5,292,779 - Echvi_4425 0.16 +1.1
5,292,846 - Echvi_4425 0.21 +0.7
5,292,856 + Echvi_4425 0.22 +0.1
5,292,857 - Echvi_4425 0.22 +0.8
5,292,897 - Echvi_4425 0.26 -0.6
5,292,897 - Echvi_4425 0.26 +1.0
5,293,010 + Echvi_4425 0.36 +0.8
5,293,011 - Echvi_4425 0.36 -0.6
5,293,016 + Echvi_4425 0.36 +1.7
5,293,016 + Echvi_4425 0.36 +0.7
5,293,017 - Echvi_4425 0.36 +0.3
5,293,017 - Echvi_4425 0.36 +0.9
5,293,020 + Echvi_4425 0.36 -0.6
5,293,020 + Echvi_4425 0.36 +0.7
5,293,020 + Echvi_4425 0.36 -0.1
5,293,020 + Echvi_4425 0.36 +0.9
5,293,021 - Echvi_4425 0.37 -0.4
5,293,031 + Echvi_4425 0.37 +0.5
5,293,032 - Echvi_4425 0.37 +1.1
5,293,047 + Echvi_4425 0.39 +1.0
5,293,047 + Echvi_4425 0.39 +1.3
5,293,047 + Echvi_4425 0.39 +0.3
5,293,048 - Echvi_4425 0.39 +0.7
5,293,132 + Echvi_4425 0.46 +1.2
5,293,141 - Echvi_4425 0.47 +0.4
5,293,230 + Echvi_4425 0.54 +1.0
5,293,230 + Echvi_4425 0.54 +1.6
5,293,230 + Echvi_4425 0.54 +0.8
5,293,230 + Echvi_4425 0.54 -0.8
5,293,361 + Echvi_4425 0.66 +0.1
5,293,361 + Echvi_4425 0.66 +0.1
5,293,361 + Echvi_4425 0.66 -1.0
5,293,361 + Echvi_4425 0.66 +0.8
5,293,362 - Echvi_4425 0.66 +0.3
5,293,394 + Echvi_4425 0.69 -0.4
5,293,410 - Echvi_4425 0.70 +3.4
5,293,623 + Echvi_4425 0.88 +1.1
5,293,624 - Echvi_4425 0.88 +0.6
5,293,730 - +0.8
5,293,730 - +0.4
5,293,736 - +2.0
5,293,736 - +0.8
5,293,736 - +2.3
5,293,744 - -1.0
5,293,744 - +0.5
5,293,744 - +0.1
5,293,745 + +0.2
5,293,762 + -0.5
5,293,763 - +1.0
5,293,763 - +0.0
5,293,765 + +0.4
5,293,823 + +1.6
5,293,823 + +0.7
5,293,847 - +1.2
5,293,885 + +0.4
5,293,886 - +0.2
5,293,919 + Echvi_4426 0.12 +1.0
5,293,954 + Echvi_4426 0.15 +0.4
5,293,955 - Echvi_4426 0.15 +0.0
5,293,974 + Echvi_4426 0.16 +1.3
5,294,124 + Echvi_4426 0.27 +0.5
5,294,124 + Echvi_4426 0.27 +0.4
5,294,124 + Echvi_4426 0.27 -0.8
5,294,124 + Echvi_4426 0.27 +0.8
5,294,125 - Echvi_4426 0.27 -0.7
5,294,125 - Echvi_4426 0.27 +0.4
5,294,125 - Echvi_4426 0.27 -0.6
5,294,145 + Echvi_4426 0.29 +0.0
5,294,205 - Echvi_4426 0.33 -0.5
5,294,234 + Echvi_4426 0.35 +0.6
5,294,267 - Echvi_4426 0.38 +0.5
5,294,329 + Echvi_4426 0.42 +0.2
5,294,329 + Echvi_4426 0.42 +1.4
5,294,484 - Echvi_4426 0.54 +1.0
5,294,697 - Echvi_4426 0.69 +0.4
5,294,778 - Echvi_4426 0.75 +0.7
5,295,016 + +0.3
5,295,135 + +1.1
5,295,137 + +0.7
5,295,168 + +0.2
5,295,168 + +1.1
5,295,168 + -0.1
5,295,168 + -1.6
5,295,202 + Echvi_4427 0.14 +0.9
5,295,211 + Echvi_4427 0.16 -1.8
5,295,315 + Echvi_4427 0.33 -0.0
5,295,316 - Echvi_4427 0.33 -0.8
5,295,316 - Echvi_4427 0.33 -0.9
5,295,316 - Echvi_4427 0.33 -0.1
5,295,447 - Echvi_4427 0.55 -0.9
5,295,468 - Echvi_4427 0.58 +0.4
5,295,558 + Echvi_4427 0.73 -0.4
5,295,602 + Echvi_4427 0.80 +0.3
5,295,656 + Echvi_4427 0.89 +1.6
5,295,656 + Echvi_4427 0.89 +1.0
5,295,656 + Echvi_4427 0.89 +0.8
5,295,656 + Echvi_4427 0.89 +1.5
5,295,656 + Echvi_4427 0.89 +0.1
5,295,656 + Echvi_4427 0.89 -0.6
5,295,656 + Echvi_4427 0.89 -0.1
5,295,656 + Echvi_4427 0.89 +2.5
5,295,656 + Echvi_4427 0.89 +2.6
5,295,656 + Echvi_4427 0.89 +2.0
5,295,656 + Echvi_4427 0.89 +0.4
5,295,657 - Echvi_4427 0.89 -0.8
5,295,657 - Echvi_4427 0.89 -1.3
5,295,657 - Echvi_4427 0.89 -0.3
5,295,657 - Echvi_4427 0.89 -0.5
5,295,657 - Echvi_4427 0.89 -1.1
5,295,657 - Echvi_4427 0.89 -1.1
5,295,657 - Echvi_4427 0.89 +0.2
5,295,657 - Echvi_4427 0.89 -0.5
5,295,657 - Echvi_4427 0.89 -1.4
5,295,700 + +0.4
5,295,701 - -0.7
5,295,962 + -1.1
5,295,994 + -1.4
5,296,088 + +0.3
5,296,093 - +0.0

Or see this region's nucleotide sequence