Experiment: m.b. Lomefloxacin 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4425 and Echvi_4426 overlap by 4 nucleotides Echvi_4426 and Echvi_4427 are separated by 3 nucleotides
Echvi_4425: Echvi_4425 - RND family efflux transporter, MFP subunit, at 5,292,596 to 5,293,759
_4425
Echvi_4426: Echvi_4426 - Outer membrane protein, at 5,293,756 to 5,295,111
_4426
Echvi_4427: Echvi_4427 - Transcriptional regulator, at 5,295,115 to 5,295,720
_4427
Position (kb)
5293
5294
5295
5296 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5292.760 kb on - strand, within Echvi_4425 at 5292.765 kb on + strand, within Echvi_4425 at 5292.765 kb on + strand, within Echvi_4425 at 5292.765 kb on + strand, within Echvi_4425 at 5292.765 kb on + strand, within Echvi_4425 at 5292.766 kb on - strand, within Echvi_4425 at 5292.766 kb on - strand, within Echvi_4425 at 5292.766 kb on - strand, within Echvi_4425 at 5292.766 kb on - strand, within Echvi_4425 at 5292.766 kb on - strand, within Echvi_4425 at 5292.766 kb on - strand, within Echvi_4425 at 5292.766 kb on - strand, within Echvi_4425 at 5292.766 kb on - strand, within Echvi_4425 at 5292.766 kb on - strand, within Echvi_4425 at 5292.779 kb on - strand, within Echvi_4425 at 5292.846 kb on - strand, within Echvi_4425 at 5292.856 kb on + strand, within Echvi_4425 at 5292.857 kb on - strand, within Echvi_4425 at 5292.897 kb on - strand, within Echvi_4425 at 5292.897 kb on - strand, within Echvi_4425 at 5293.010 kb on + strand, within Echvi_4425 at 5293.011 kb on - strand, within Echvi_4425 at 5293.016 kb on + strand, within Echvi_4425 at 5293.016 kb on + strand, within Echvi_4425 at 5293.017 kb on - strand, within Echvi_4425 at 5293.017 kb on - strand, within Echvi_4425 at 5293.020 kb on + strand, within Echvi_4425 at 5293.020 kb on + strand, within Echvi_4425 at 5293.020 kb on + strand, within Echvi_4425 at 5293.020 kb on + strand, within Echvi_4425 at 5293.021 kb on - strand, within Echvi_4425 at 5293.031 kb on + strand, within Echvi_4425 at 5293.032 kb on - strand, within Echvi_4425 at 5293.047 kb on + strand, within Echvi_4425 at 5293.047 kb on + strand, within Echvi_4425 at 5293.047 kb on + strand, within Echvi_4425 at 5293.048 kb on - strand, within Echvi_4425 at 5293.132 kb on + strand, within Echvi_4425 at 5293.141 kb on - strand, within Echvi_4425 at 5293.230 kb on + strand, within Echvi_4425 at 5293.230 kb on + strand, within Echvi_4425 at 5293.230 kb on + strand, within Echvi_4425 at 5293.230 kb on + strand, within Echvi_4425 at 5293.361 kb on + strand, within Echvi_4425 at 5293.361 kb on + strand, within Echvi_4425 at 5293.361 kb on + strand, within Echvi_4425 at 5293.361 kb on + strand, within Echvi_4425 at 5293.362 kb on - strand, within Echvi_4425 at 5293.394 kb on + strand, within Echvi_4425 at 5293.410 kb on - strand, within Echvi_4425 at 5293.623 kb on + strand, within Echvi_4425 at 5293.624 kb on - strand, within Echvi_4425 at 5293.730 kb on - strand at 5293.730 kb on - strand at 5293.736 kb on - strand at 5293.736 kb on - strand at 5293.736 kb on - strand at 5293.744 kb on - strand at 5293.744 kb on - strand at 5293.744 kb on - strand at 5293.745 kb on + strand at 5293.762 kb on + strand at 5293.763 kb on - strand at 5293.763 kb on - strand at 5293.765 kb on + strand at 5293.823 kb on + strand at 5293.823 kb on + strand at 5293.847 kb on - strand at 5293.885 kb on + strand at 5293.886 kb on - strand at 5293.919 kb on + strand, within Echvi_4426 at 5293.954 kb on + strand, within Echvi_4426 at 5293.955 kb on - strand, within Echvi_4426 at 5293.974 kb on + strand, within Echvi_4426 at 5294.124 kb on + strand, within Echvi_4426 at 5294.124 kb on + strand, within Echvi_4426 at 5294.124 kb on + strand, within Echvi_4426 at 5294.124 kb on + strand, within Echvi_4426 at 5294.125 kb on - strand, within Echvi_4426 at 5294.125 kb on - strand, within Echvi_4426 at 5294.125 kb on - strand, within Echvi_4426 at 5294.145 kb on + strand, within Echvi_4426 at 5294.205 kb on - strand, within Echvi_4426 at 5294.234 kb on + strand, within Echvi_4426 at 5294.267 kb on - strand, within Echvi_4426 at 5294.329 kb on + strand, within Echvi_4426 at 5294.329 kb on + strand, within Echvi_4426 at 5294.484 kb on - strand, within Echvi_4426 at 5294.697 kb on - strand, within Echvi_4426 at 5294.778 kb on - strand, within Echvi_4426 at 5295.016 kb on + strand at 5295.135 kb on + strand at 5295.137 kb on + strand at 5295.168 kb on + strand at 5295.168 kb on + strand at 5295.168 kb on + strand at 5295.168 kb on + strand at 5295.202 kb on + strand, within Echvi_4427 at 5295.211 kb on + strand, within Echvi_4427 at 5295.315 kb on + strand, within Echvi_4427 at 5295.316 kb on - strand, within Echvi_4427 at 5295.316 kb on - strand, within Echvi_4427 at 5295.316 kb on - strand, within Echvi_4427 at 5295.447 kb on - strand, within Echvi_4427 at 5295.468 kb on - strand, within Echvi_4427 at 5295.558 kb on + strand, within Echvi_4427 at 5295.602 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.656 kb on + strand, within Echvi_4427 at 5295.657 kb on - strand, within Echvi_4427 at 5295.657 kb on - strand, within Echvi_4427 at 5295.657 kb on - strand, within Echvi_4427 at 5295.657 kb on - strand, within Echvi_4427 at 5295.657 kb on - strand, within Echvi_4427 at 5295.657 kb on - strand, within Echvi_4427 at 5295.657 kb on - strand, within Echvi_4427 at 5295.657 kb on - strand, within Echvi_4427 at 5295.657 kb on - strand, within Echvi_4427 at 5295.700 kb on + strand at 5295.701 kb on - strand at 5295.962 kb on + strand at 5295.994 kb on + strand at 5296.088 kb on + strand at 5296.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0125 mM remove 5,292,760 - Echvi_4425 0.14 +2.1 5,292,765 + Echvi_4425 0.15 +0.5 5,292,765 + Echvi_4425 0.15 +0.8 5,292,765 + Echvi_4425 0.15 -0.6 5,292,765 + Echvi_4425 0.15 +1.6 5,292,766 - Echvi_4425 0.15 +0.6 5,292,766 - Echvi_4425 0.15 +0.5 5,292,766 - Echvi_4425 0.15 +1.3 5,292,766 - Echvi_4425 0.15 +1.8 5,292,766 - Echvi_4425 0.15 +1.1 5,292,766 - Echvi_4425 0.15 -0.2 5,292,766 - Echvi_4425 0.15 +0.2 5,292,766 - Echvi_4425 0.15 +1.3 5,292,766 - Echvi_4425 0.15 +0.8 5,292,779 - Echvi_4425 0.16 +1.1 5,292,846 - Echvi_4425 0.21 +0.7 5,292,856 + Echvi_4425 0.22 +0.1 5,292,857 - Echvi_4425 0.22 +0.8 5,292,897 - Echvi_4425 0.26 -0.6 5,292,897 - Echvi_4425 0.26 +1.0 5,293,010 + Echvi_4425 0.36 +0.8 5,293,011 - Echvi_4425 0.36 -0.6 5,293,016 + Echvi_4425 0.36 +1.7 5,293,016 + Echvi_4425 0.36 +0.7 5,293,017 - Echvi_4425 0.36 +0.3 5,293,017 - Echvi_4425 0.36 +0.9 5,293,020 + Echvi_4425 0.36 -0.6 5,293,020 + Echvi_4425 0.36 +0.7 5,293,020 + Echvi_4425 0.36 -0.1 5,293,020 + Echvi_4425 0.36 +0.9 5,293,021 - Echvi_4425 0.37 -0.4 5,293,031 + Echvi_4425 0.37 +0.5 5,293,032 - Echvi_4425 0.37 +1.1 5,293,047 + Echvi_4425 0.39 +1.0 5,293,047 + Echvi_4425 0.39 +1.3 5,293,047 + Echvi_4425 0.39 +0.3 5,293,048 - Echvi_4425 0.39 +0.7 5,293,132 + Echvi_4425 0.46 +1.2 5,293,141 - Echvi_4425 0.47 +0.4 5,293,230 + Echvi_4425 0.54 +1.0 5,293,230 + Echvi_4425 0.54 +1.6 5,293,230 + Echvi_4425 0.54 +0.8 5,293,230 + Echvi_4425 0.54 -0.8 5,293,361 + Echvi_4425 0.66 +0.1 5,293,361 + Echvi_4425 0.66 +0.1 5,293,361 + Echvi_4425 0.66 -1.0 5,293,361 + Echvi_4425 0.66 +0.8 5,293,362 - Echvi_4425 0.66 +0.3 5,293,394 + Echvi_4425 0.69 -0.4 5,293,410 - Echvi_4425 0.70 +3.4 5,293,623 + Echvi_4425 0.88 +1.1 5,293,624 - Echvi_4425 0.88 +0.6 5,293,730 - +0.8 5,293,730 - +0.4 5,293,736 - +2.0 5,293,736 - +0.8 5,293,736 - +2.3 5,293,744 - -1.0 5,293,744 - +0.5 5,293,744 - +0.1 5,293,745 + +0.2 5,293,762 + -0.5 5,293,763 - +1.0 5,293,763 - +0.0 5,293,765 + +0.4 5,293,823 + +1.6 5,293,823 + +0.7 5,293,847 - +1.2 5,293,885 + +0.4 5,293,886 - +0.2 5,293,919 + Echvi_4426 0.12 +1.0 5,293,954 + Echvi_4426 0.15 +0.4 5,293,955 - Echvi_4426 0.15 +0.0 5,293,974 + Echvi_4426 0.16 +1.3 5,294,124 + Echvi_4426 0.27 +0.5 5,294,124 + Echvi_4426 0.27 +0.4 5,294,124 + Echvi_4426 0.27 -0.8 5,294,124 + Echvi_4426 0.27 +0.8 5,294,125 - Echvi_4426 0.27 -0.7 5,294,125 - Echvi_4426 0.27 +0.4 5,294,125 - Echvi_4426 0.27 -0.6 5,294,145 + Echvi_4426 0.29 +0.0 5,294,205 - Echvi_4426 0.33 -0.5 5,294,234 + Echvi_4426 0.35 +0.6 5,294,267 - Echvi_4426 0.38 +0.5 5,294,329 + Echvi_4426 0.42 +0.2 5,294,329 + Echvi_4426 0.42 +1.4 5,294,484 - Echvi_4426 0.54 +1.0 5,294,697 - Echvi_4426 0.69 +0.4 5,294,778 - Echvi_4426 0.75 +0.7 5,295,016 + +0.3 5,295,135 + +1.1 5,295,137 + +0.7 5,295,168 + +0.2 5,295,168 + +1.1 5,295,168 + -0.1 5,295,168 + -1.6 5,295,202 + Echvi_4427 0.14 +0.9 5,295,211 + Echvi_4427 0.16 -1.8 5,295,315 + Echvi_4427 0.33 -0.0 5,295,316 - Echvi_4427 0.33 -0.8 5,295,316 - Echvi_4427 0.33 -0.9 5,295,316 - Echvi_4427 0.33 -0.1 5,295,447 - Echvi_4427 0.55 -0.9 5,295,468 - Echvi_4427 0.58 +0.4 5,295,558 + Echvi_4427 0.73 -0.4 5,295,602 + Echvi_4427 0.80 +0.3 5,295,656 + Echvi_4427 0.89 +1.6 5,295,656 + Echvi_4427 0.89 +1.0 5,295,656 + Echvi_4427 0.89 +0.8 5,295,656 + Echvi_4427 0.89 +1.5 5,295,656 + Echvi_4427 0.89 +0.1 5,295,656 + Echvi_4427 0.89 -0.6 5,295,656 + Echvi_4427 0.89 -0.1 5,295,656 + Echvi_4427 0.89 +2.5 5,295,656 + Echvi_4427 0.89 +2.6 5,295,656 + Echvi_4427 0.89 +2.0 5,295,656 + Echvi_4427 0.89 +0.4 5,295,657 - Echvi_4427 0.89 -0.8 5,295,657 - Echvi_4427 0.89 -1.3 5,295,657 - Echvi_4427 0.89 -0.3 5,295,657 - Echvi_4427 0.89 -0.5 5,295,657 - Echvi_4427 0.89 -1.1 5,295,657 - Echvi_4427 0.89 -1.1 5,295,657 - Echvi_4427 0.89 +0.2 5,295,657 - Echvi_4427 0.89 -0.5 5,295,657 - Echvi_4427 0.89 -1.4 5,295,700 + +0.4 5,295,701 - -0.7 5,295,962 + -1.1 5,295,994 + -1.4 5,296,088 + +0.3 5,296,093 - +0.0
Or see this region's nucleotide sequence