Experiment: m.b. Lomefloxacin 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2371 and Echvi_2372 are separated by 172 nucleotides Echvi_2372 and Echvi_2373 are separated by 12 nucleotides Echvi_2373 and Echvi_2374 are separated by 40 nucleotides Echvi_2374 and Echvi_2375 overlap by 8 nucleotides
Echvi_2371: Echvi_2371 - Sterol desaturase, at 2,809,004 to 2,809,975
_2371
Echvi_2372: Echvi_2372 - protein translocase, SecG subunit, at 2,810,148 to 2,810,522
_2372
Echvi_2373: Echvi_2373 - hypothetical protein, at 2,810,535 to 2,811,389
_2373
Echvi_2374: Echvi_2374 - hypothetical protein, at 2,811,430 to 2,811,966
_2374
Echvi_2375: Echvi_2375 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 2,811,959 to 2,813,260
_2375
Position (kb)
2810
2811
2812 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2809.660 kb on - strand, within Echvi_2371 at 2809.682 kb on - strand, within Echvi_2371 at 2809.682 kb on - strand, within Echvi_2371 at 2809.682 kb on - strand, within Echvi_2371 at 2809.682 kb on - strand, within Echvi_2371 at 2809.691 kb on + strand, within Echvi_2371 at 2809.691 kb on + strand, within Echvi_2371 at 2809.748 kb on + strand, within Echvi_2371 at 2809.749 kb on - strand, within Echvi_2371 at 2809.749 kb on - strand, within Echvi_2371 at 2809.749 kb on - strand, within Echvi_2371 at 2809.840 kb on - strand, within Echvi_2371 at 2809.856 kb on - strand, within Echvi_2371 at 2809.856 kb on - strand, within Echvi_2371 at 2809.861 kb on + strand, within Echvi_2371 at 2809.861 kb on + strand, within Echvi_2371 at 2809.943 kb on + strand at 2809.944 kb on - strand at 2809.944 kb on - strand at 2809.962 kb on + strand at 2809.963 kb on - strand at 2809.963 kb on - strand at 2809.976 kb on - strand at 2809.988 kb on - strand at 2809.988 kb on - strand at 2809.989 kb on + strand at 2809.989 kb on + strand at 2809.989 kb on + strand at 2809.990 kb on - strand at 2809.990 kb on - strand at 2810.010 kb on + strand at 2810.028 kb on + strand at 2810.070 kb on + strand at 2810.071 kb on - strand at 2810.612 kb on + strand at 2810.650 kb on - strand, within Echvi_2373 at 2810.673 kb on + strand, within Echvi_2373 at 2810.673 kb on + strand, within Echvi_2373 at 2810.674 kb on - strand, within Echvi_2373 at 2810.694 kb on - strand, within Echvi_2373 at 2810.733 kb on + strand, within Echvi_2373 at 2810.785 kb on - strand, within Echvi_2373 at 2810.785 kb on - strand, within Echvi_2373 at 2810.968 kb on - strand, within Echvi_2373 at 2810.968 kb on - strand, within Echvi_2373 at 2811.066 kb on - strand, within Echvi_2373 at 2811.260 kb on - strand, within Echvi_2373 at 2811.365 kb on + strand at 2811.366 kb on - strand at 2811.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0125 mM remove 2,809,660 - Echvi_2371 0.67 -1.2 2,809,682 - Echvi_2371 0.70 +0.1 2,809,682 - Echvi_2371 0.70 -0.4 2,809,682 - Echvi_2371 0.70 -0.4 2,809,682 - Echvi_2371 0.70 -0.6 2,809,691 + Echvi_2371 0.71 +0.2 2,809,691 + Echvi_2371 0.71 +0.6 2,809,748 + Echvi_2371 0.77 -1.6 2,809,749 - Echvi_2371 0.77 -0.4 2,809,749 - Echvi_2371 0.77 +1.0 2,809,749 - Echvi_2371 0.77 -0.2 2,809,840 - Echvi_2371 0.86 -0.9 2,809,856 - Echvi_2371 0.88 -0.3 2,809,856 - Echvi_2371 0.88 +0.3 2,809,861 + Echvi_2371 0.88 +1.0 2,809,861 + Echvi_2371 0.88 +0.4 2,809,943 + +0.2 2,809,944 - +0.0 2,809,944 - +0.4 2,809,962 + +0.9 2,809,963 - +0.9 2,809,963 - -0.4 2,809,976 - +0.4 2,809,988 - -0.5 2,809,988 - +2.6 2,809,989 + -0.3 2,809,989 + +0.2 2,809,989 + -1.3 2,809,990 - -0.7 2,809,990 - -0.6 2,810,010 + -0.7 2,810,028 + +0.2 2,810,070 + -1.2 2,810,071 - -0.6 2,810,612 + -0.8 2,810,650 - Echvi_2373 0.13 +0.0 2,810,673 + Echvi_2373 0.16 -2.0 2,810,673 + Echvi_2373 0.16 -1.8 2,810,674 - Echvi_2373 0.16 -2.0 2,810,694 - Echvi_2373 0.19 -1.0 2,810,733 + Echvi_2373 0.23 -2.1 2,810,785 - Echvi_2373 0.29 -0.4 2,810,785 - Echvi_2373 0.29 -1.2 2,810,968 - Echvi_2373 0.51 -1.8 2,810,968 - Echvi_2373 0.51 +0.4 2,811,066 - Echvi_2373 0.62 -1.6 2,811,260 - Echvi_2373 0.85 +0.0 2,811,365 + -2.8 2,811,366 - -0.6 2,811,425 + +0.5
Or see this region's nucleotide sequence