Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2373

Experiment: m.b. Lomefloxacin 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2371 and Echvi_2372 are separated by 172 nucleotidesEchvi_2372 and Echvi_2373 are separated by 12 nucleotidesEchvi_2373 and Echvi_2374 are separated by 40 nucleotidesEchvi_2374 and Echvi_2375 overlap by 8 nucleotides Echvi_2371: Echvi_2371 - Sterol desaturase, at 2,809,004 to 2,809,975 _2371 Echvi_2372: Echvi_2372 - protein translocase, SecG subunit, at 2,810,148 to 2,810,522 _2372 Echvi_2373: Echvi_2373 - hypothetical protein, at 2,810,535 to 2,811,389 _2373 Echvi_2374: Echvi_2374 - hypothetical protein, at 2,811,430 to 2,811,966 _2374 Echvi_2375: Echvi_2375 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 2,811,959 to 2,813,260 _2375 Position (kb) 2810 2811 2812Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2809.660 kb on - strand, within Echvi_2371at 2809.682 kb on - strand, within Echvi_2371at 2809.682 kb on - strand, within Echvi_2371at 2809.682 kb on - strand, within Echvi_2371at 2809.682 kb on - strand, within Echvi_2371at 2809.691 kb on + strand, within Echvi_2371at 2809.691 kb on + strand, within Echvi_2371at 2809.748 kb on + strand, within Echvi_2371at 2809.749 kb on - strand, within Echvi_2371at 2809.749 kb on - strand, within Echvi_2371at 2809.749 kb on - strand, within Echvi_2371at 2809.840 kb on - strand, within Echvi_2371at 2809.856 kb on - strand, within Echvi_2371at 2809.856 kb on - strand, within Echvi_2371at 2809.861 kb on + strand, within Echvi_2371at 2809.861 kb on + strand, within Echvi_2371at 2809.943 kb on + strandat 2809.944 kb on - strandat 2809.944 kb on - strandat 2809.962 kb on + strandat 2809.963 kb on - strandat 2809.963 kb on - strandat 2809.976 kb on - strandat 2809.988 kb on - strandat 2809.988 kb on - strandat 2809.989 kb on + strandat 2809.989 kb on + strandat 2809.989 kb on + strandat 2809.990 kb on - strandat 2809.990 kb on - strandat 2810.010 kb on + strandat 2810.028 kb on + strandat 2810.070 kb on + strandat 2810.071 kb on - strandat 2810.612 kb on + strandat 2810.650 kb on - strand, within Echvi_2373at 2810.673 kb on + strand, within Echvi_2373at 2810.673 kb on + strand, within Echvi_2373at 2810.674 kb on - strand, within Echvi_2373at 2810.694 kb on - strand, within Echvi_2373at 2810.733 kb on + strand, within Echvi_2373at 2810.785 kb on - strand, within Echvi_2373at 2810.785 kb on - strand, within Echvi_2373at 2810.968 kb on - strand, within Echvi_2373at 2810.968 kb on - strand, within Echvi_2373at 2811.066 kb on - strand, within Echvi_2373at 2811.260 kb on - strand, within Echvi_2373at 2811.365 kb on + strandat 2811.366 kb on - strandat 2811.425 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0125 mM
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2,809,660 - Echvi_2371 0.67 -1.2
2,809,682 - Echvi_2371 0.70 +0.1
2,809,682 - Echvi_2371 0.70 -0.4
2,809,682 - Echvi_2371 0.70 -0.4
2,809,682 - Echvi_2371 0.70 -0.6
2,809,691 + Echvi_2371 0.71 +0.2
2,809,691 + Echvi_2371 0.71 +0.6
2,809,748 + Echvi_2371 0.77 -1.6
2,809,749 - Echvi_2371 0.77 -0.4
2,809,749 - Echvi_2371 0.77 +1.0
2,809,749 - Echvi_2371 0.77 -0.2
2,809,840 - Echvi_2371 0.86 -0.9
2,809,856 - Echvi_2371 0.88 -0.3
2,809,856 - Echvi_2371 0.88 +0.3
2,809,861 + Echvi_2371 0.88 +1.0
2,809,861 + Echvi_2371 0.88 +0.4
2,809,943 + +0.2
2,809,944 - +0.0
2,809,944 - +0.4
2,809,962 + +0.9
2,809,963 - +0.9
2,809,963 - -0.4
2,809,976 - +0.4
2,809,988 - -0.5
2,809,988 - +2.6
2,809,989 + -0.3
2,809,989 + +0.2
2,809,989 + -1.3
2,809,990 - -0.7
2,809,990 - -0.6
2,810,010 + -0.7
2,810,028 + +0.2
2,810,070 + -1.2
2,810,071 - -0.6
2,810,612 + -0.8
2,810,650 - Echvi_2373 0.13 +0.0
2,810,673 + Echvi_2373 0.16 -2.0
2,810,673 + Echvi_2373 0.16 -1.8
2,810,674 - Echvi_2373 0.16 -2.0
2,810,694 - Echvi_2373 0.19 -1.0
2,810,733 + Echvi_2373 0.23 -2.1
2,810,785 - Echvi_2373 0.29 -0.4
2,810,785 - Echvi_2373 0.29 -1.2
2,810,968 - Echvi_2373 0.51 -1.8
2,810,968 - Echvi_2373 0.51 +0.4
2,811,066 - Echvi_2373 0.62 -1.6
2,811,260 - Echvi_2373 0.85 +0.0
2,811,365 + -2.8
2,811,366 - -0.6
2,811,425 + +0.5

Or see this region's nucleotide sequence