Experiment: m.b. Lomefloxacin 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0818 and Echvi_0819 are separated by 435 nucleotides Echvi_0819 and Echvi_0820 are separated by 116 nucleotides Echvi_0820 and Echvi_0821 are separated by 71 nucleotides Echvi_0821 and Echvi_0822 are separated by 6 nucleotides
Echvi_0818: Echvi_0818 - Uncharacterized conserved protein, at 935,563 to 936,705
_0818
Echvi_0819: Echvi_0819 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 937,141 to 937,662
_0819
Echvi_0820: Echvi_0820 - Membrane transporters of cations and cationic drugs, at 937,779 to 938,108
_0820
Echvi_0821: Echvi_0821 - Acetyltransferases, at 938,180 to 938,578
_0821
Echvi_0822: Echvi_0822 - Acetyltransferases, at 938,585 to 939,103
_0822
Position (kb) 937
938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 936.161 kb on + strand, within Echvi_0818 at 936.162 kb on - strand, within Echvi_0818 at 936.170 kb on + strand, within Echvi_0818 at 936.171 kb on - strand, within Echvi_0818 at 936.252 kb on + strand, within Echvi_0818 at 936.253 kb on - strand, within Echvi_0818 at 936.270 kb on + strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.304 kb on + strand, within Echvi_0818 at 936.305 kb on - strand, within Echvi_0818 at 936.305 kb on - strand, within Echvi_0818 at 936.305 kb on - strand, within Echvi_0818 at 936.307 kb on + strand, within Echvi_0818 at 936.307 kb on + strand, within Echvi_0818 at 936.308 kb on - strand, within Echvi_0818 at 936.308 kb on - strand, within Echvi_0818 at 936.308 kb on - strand, within Echvi_0818 at 936.347 kb on + strand, within Echvi_0818 at 936.347 kb on + strand, within Echvi_0818 at 936.348 kb on - strand, within Echvi_0818 at 936.348 kb on - strand, within Echvi_0818 at 936.411 kb on - strand, within Echvi_0818 at 936.459 kb on + strand, within Echvi_0818 at 936.489 kb on - strand, within Echvi_0818 at 936.496 kb on - strand, within Echvi_0818 at 936.500 kb on + strand, within Echvi_0818 at 936.501 kb on - strand, within Echvi_0818 at 936.524 kb on + strand, within Echvi_0818 at 936.525 kb on - strand, within Echvi_0818 at 936.595 kb on - strand at 936.657 kb on - strand at 936.680 kb on + strand at 936.680 kb on + strand at 936.681 kb on - strand at 936.720 kb on + strand at 936.720 kb on + strand at 936.721 kb on - strand at 936.768 kb on - strand at 936.768 kb on - strand at 936.906 kb on + strand at 936.907 kb on - strand at 936.907 kb on - strand at 936.907 kb on - strand at 936.947 kb on + strand at 936.979 kb on + strand at 936.979 kb on + strand at 936.984 kb on + strand at 937.002 kb on - strand at 937.002 kb on - strand at 937.012 kb on + strand at 937.012 kb on + strand at 937.020 kb on - strand at 937.053 kb on + strand at 937.071 kb on + strand at 937.072 kb on - strand at 937.087 kb on - strand at 937.087 kb on - strand at 937.091 kb on + strand at 937.149 kb on - strand at 937.226 kb on - strand, within Echvi_0819 at 937.226 kb on - strand, within Echvi_0819 at 937.241 kb on - strand, within Echvi_0819 at 937.280 kb on - strand, within Echvi_0819 at 937.306 kb on - strand, within Echvi_0819 at 937.376 kb on + strand, within Echvi_0819 at 937.387 kb on - strand, within Echvi_0819 at 937.411 kb on + strand, within Echvi_0819 at 937.411 kb on + strand, within Echvi_0819 at 937.411 kb on + strand, within Echvi_0819 at 937.411 kb on + strand, within Echvi_0819 at 937.411 kb on + strand, within Echvi_0819 at 937.411 kb on + strand, within Echvi_0819 at 937.412 kb on - strand, within Echvi_0819 at 937.412 kb on - strand, within Echvi_0819 at 937.413 kb on + strand, within Echvi_0819 at 937.414 kb on - strand, within Echvi_0819 at 937.414 kb on - strand, within Echvi_0819 at 937.415 kb on + strand, within Echvi_0819 at 937.415 kb on + strand, within Echvi_0819 at 937.415 kb on + strand, within Echvi_0819 at 937.415 kb on + strand, within Echvi_0819 at 937.415 kb on + strand, within Echvi_0819 at 937.415 kb on + strand, within Echvi_0819 at 937.415 kb on + strand, within Echvi_0819 at 937.415 kb on + strand, within Echvi_0819 at 937.415 kb on + strand, within Echvi_0819 at 937.415 kb on + strand, within Echvi_0819 at 937.416 kb on - strand, within Echvi_0819 at 937.416 kb on - strand, within Echvi_0819 at 937.416 kb on - strand, within Echvi_0819 at 937.416 kb on - strand, within Echvi_0819 at 937.416 kb on - strand, within Echvi_0819 at 937.416 kb on - strand, within Echvi_0819 at 937.422 kb on - strand, within Echvi_0819 at 937.436 kb on + strand, within Echvi_0819 at 937.585 kb on + strand, within Echvi_0819 at 937.615 kb on + strand at 937.639 kb on + strand at 937.649 kb on + strand at 937.653 kb on + strand at 937.658 kb on - strand at 937.658 kb on - strand at 937.701 kb on - strand at 937.701 kb on - strand at 937.705 kb on - strand at 937.800 kb on - strand at 937.810 kb on + strand at 937.811 kb on - strand at 937.872 kb on + strand, within Echvi_0820 at 937.872 kb on + strand, within Echvi_0820 at 937.872 kb on + strand, within Echvi_0820 at 937.872 kb on + strand, within Echvi_0820 at 937.872 kb on + strand, within Echvi_0820 at 937.872 kb on + strand, within Echvi_0820 at 937.872 kb on + strand, within Echvi_0820 at 937.872 kb on + strand, within Echvi_0820 at 937.872 kb on + strand, within Echvi_0820 at 937.872 kb on + strand, within Echvi_0820 at 937.873 kb on - strand, within Echvi_0820 at 937.873 kb on - strand, within Echvi_0820 at 937.873 kb on - strand, within Echvi_0820 at 937.873 kb on - strand, within Echvi_0820 at 937.873 kb on - strand, within Echvi_0820 at 937.876 kb on + strand, within Echvi_0820 at 937.877 kb on - strand, within Echvi_0820 at 937.914 kb on - strand, within Echvi_0820 at 937.921 kb on + strand, within Echvi_0820 at 937.963 kb on - strand, within Echvi_0820 at 938.015 kb on + strand, within Echvi_0820 at 938.015 kb on + strand, within Echvi_0820 at 938.015 kb on + strand, within Echvi_0820 at 938.016 kb on - strand, within Echvi_0820 at 938.018 kb on - strand, within Echvi_0820 at 938.021 kb on + strand, within Echvi_0820 at 938.021 kb on + strand, within Echvi_0820 at 938.032 kb on + strand, within Echvi_0820 at 938.068 kb on + strand, within Echvi_0820 at 938.069 kb on - strand, within Echvi_0820 at 938.069 kb on - strand, within Echvi_0820 at 938.117 kb on - strand at 938.121 kb on - strand at 938.121 kb on - strand at 938.122 kb on + strand at 938.122 kb on + strand at 938.122 kb on + strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.128 kb on + strand at 938.128 kb on + strand at 938.128 kb on + strand at 938.128 kb on + strand at 938.129 kb on - strand at 938.129 kb on - strand at 938.131 kb on - strand at 938.131 kb on - strand at 938.197 kb on - strand at 938.207 kb on + strand at 938.207 kb on + strand at 938.208 kb on - strand at 938.222 kb on - strand, within Echvi_0821 at 938.239 kb on - strand, within Echvi_0821 at 938.313 kb on + strand, within Echvi_0821 at 938.317 kb on + strand, within Echvi_0821 at 938.317 kb on + strand, within Echvi_0821 at 938.317 kb on + strand, within Echvi_0821 at 938.318 kb on - strand, within Echvi_0821 at 938.318 kb on - strand, within Echvi_0821 at 938.318 kb on - strand, within Echvi_0821 at 938.323 kb on + strand, within Echvi_0821 at 938.323 kb on + strand, within Echvi_0821 at 938.323 kb on + strand, within Echvi_0821 at 938.323 kb on + strand, within Echvi_0821 at 938.324 kb on - strand, within Echvi_0821 at 938.324 kb on - strand, within Echvi_0821 at 938.324 kb on - strand, within Echvi_0821 at 938.327 kb on + strand, within Echvi_0821 at 938.327 kb on + strand, within Echvi_0821 at 938.331 kb on - strand, within Echvi_0821 at 938.331 kb on - strand, within Echvi_0821 at 938.331 kb on - strand, within Echvi_0821 at 938.343 kb on - strand, within Echvi_0821 at 938.344 kb on + strand, within Echvi_0821 at 938.344 kb on + strand, within Echvi_0821 at 938.344 kb on + strand, within Echvi_0821 at 938.344 kb on + strand, within Echvi_0821 at 938.345 kb on - strand, within Echvi_0821 at 938.468 kb on - strand, within Echvi_0821 at 938.468 kb on - strand, within Echvi_0821 at 938.519 kb on + strand, within Echvi_0821 at 938.520 kb on - strand, within Echvi_0821 at 938.561 kb on + strand at 938.562 kb on - strand at 938.572 kb on + strand at 938.596 kb on - strand at 938.644 kb on + strand, within Echvi_0822
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0125 mM remove 936,161 + Echvi_0818 0.52 +1.6 936,162 - Echvi_0818 0.52 +0.6 936,170 + Echvi_0818 0.53 +0.3 936,171 - Echvi_0818 0.53 -0.4 936,252 + Echvi_0818 0.60 +0.1 936,253 - Echvi_0818 0.60 -0.2 936,270 + Echvi_0818 0.62 -0.4 936,271 - Echvi_0818 0.62 -0.9 936,271 - Echvi_0818 0.62 -0.8 936,271 - Echvi_0818 0.62 -0.2 936,271 - Echvi_0818 0.62 -1.0 936,271 - Echvi_0818 0.62 -0.3 936,271 - Echvi_0818 0.62 -0.4 936,304 + Echvi_0818 0.65 +0.3 936,305 - Echvi_0818 0.65 -0.5 936,305 - Echvi_0818 0.65 +1.5 936,305 - Echvi_0818 0.65 +0.6 936,307 + Echvi_0818 0.65 -0.1 936,307 + Echvi_0818 0.65 +0.3 936,308 - Echvi_0818 0.65 -0.4 936,308 - Echvi_0818 0.65 -0.3 936,308 - Echvi_0818 0.65 +0.1 936,347 + Echvi_0818 0.69 +1.2 936,347 + Echvi_0818 0.69 +0.2 936,348 - Echvi_0818 0.69 -0.6 936,348 - Echvi_0818 0.69 +0.1 936,411 - Echvi_0818 0.74 -1.9 936,459 + Echvi_0818 0.78 +2.1 936,489 - Echvi_0818 0.81 +0.3 936,496 - Echvi_0818 0.82 -0.5 936,500 + Echvi_0818 0.82 -1.4 936,501 - Echvi_0818 0.82 +0.6 936,524 + Echvi_0818 0.84 -0.4 936,525 - Echvi_0818 0.84 -0.2 936,595 - -0.4 936,657 - -1.0 936,680 + +2.6 936,680 + -0.4 936,681 - -0.1 936,720 + +1.2 936,720 + -0.0 936,721 - +0.0 936,768 - -0.4 936,768 - +2.4 936,906 + -0.9 936,907 - -0.1 936,907 - -0.3 936,907 - +0.2 936,947 + -0.3 936,979 + -0.2 936,979 + +0.1 936,984 + +1.0 937,002 - -0.1 937,002 - +0.9 937,012 + -0.2 937,012 + +0.4 937,020 - +0.0 937,053 + -1.2 937,071 + +0.5 937,072 - -0.9 937,087 - -0.6 937,087 - +1.2 937,091 + +0.2 937,149 - +0.3 937,226 - Echvi_0819 0.16 -0.1 937,226 - Echvi_0819 0.16 +0.3 937,241 - Echvi_0819 0.19 -0.5 937,280 - Echvi_0819 0.27 +0.7 937,306 - Echvi_0819 0.32 -0.2 937,376 + Echvi_0819 0.45 -2.7 937,387 - Echvi_0819 0.47 -0.4 937,411 + Echvi_0819 0.52 -1.7 937,411 + Echvi_0819 0.52 -0.6 937,411 + Echvi_0819 0.52 -0.4 937,411 + Echvi_0819 0.52 +0.6 937,411 + Echvi_0819 0.52 -1.0 937,411 + Echvi_0819 0.52 -0.2 937,412 - Echvi_0819 0.52 +0.6 937,412 - Echvi_0819 0.52 -0.5 937,413 + Echvi_0819 0.52 +0.6 937,414 - Echvi_0819 0.52 -0.4 937,414 - Echvi_0819 0.52 -1.7 937,415 + Echvi_0819 0.52 -0.9 937,415 + Echvi_0819 0.52 -0.2 937,415 + Echvi_0819 0.52 +0.2 937,415 + Echvi_0819 0.52 -3.5 937,415 + Echvi_0819 0.52 -0.2 937,415 + Echvi_0819 0.52 -0.3 937,415 + Echvi_0819 0.52 -0.6 937,415 + Echvi_0819 0.52 -0.4 937,415 + Echvi_0819 0.52 -1.4 937,415 + Echvi_0819 0.52 -2.5 937,416 - Echvi_0819 0.53 -0.3 937,416 - Echvi_0819 0.53 -0.9 937,416 - Echvi_0819 0.53 +0.3 937,416 - Echvi_0819 0.53 +0.2 937,416 - Echvi_0819 0.53 -0.7 937,416 - Echvi_0819 0.53 -0.4 937,422 - Echvi_0819 0.54 -1.1 937,436 + Echvi_0819 0.57 +0.1 937,585 + Echvi_0819 0.85 +0.0 937,615 + +0.2 937,639 + +0.6 937,649 + -0.2 937,653 + -0.3 937,658 - +0.7 937,658 - +0.2 937,701 - -0.5 937,701 - -0.7 937,705 - -0.1 937,800 - -0.5 937,810 + +0.8 937,811 - -0.5 937,872 + Echvi_0820 0.28 -0.4 937,872 + Echvi_0820 0.28 +0.4 937,872 + Echvi_0820 0.28 +0.2 937,872 + Echvi_0820 0.28 -0.3 937,872 + Echvi_0820 0.28 +1.9 937,872 + Echvi_0820 0.28 -1.2 937,872 + Echvi_0820 0.28 -1.0 937,872 + Echvi_0820 0.28 -1.9 937,872 + Echvi_0820 0.28 +0.3 937,872 + Echvi_0820 0.28 -0.1 937,873 - Echvi_0820 0.28 +0.0 937,873 - Echvi_0820 0.28 +0.2 937,873 - Echvi_0820 0.28 -0.7 937,873 - Echvi_0820 0.28 +0.4 937,873 - Echvi_0820 0.28 +0.1 937,876 + Echvi_0820 0.29 +0.9 937,877 - Echvi_0820 0.30 +0.1 937,914 - Echvi_0820 0.41 +0.6 937,921 + Echvi_0820 0.43 +1.2 937,963 - Echvi_0820 0.56 +0.9 938,015 + Echvi_0820 0.72 -0.2 938,015 + Echvi_0820 0.72 +0.5 938,015 + Echvi_0820 0.72 -0.1 938,016 - Echvi_0820 0.72 +1.6 938,018 - Echvi_0820 0.72 +0.2 938,021 + Echvi_0820 0.73 +1.1 938,021 + Echvi_0820 0.73 +0.8 938,032 + Echvi_0820 0.77 -1.5 938,068 + Echvi_0820 0.88 +2.2 938,069 - Echvi_0820 0.88 +0.2 938,069 - Echvi_0820 0.88 -0.3 938,117 - -0.7 938,121 - -0.1 938,121 - +0.1 938,122 + +0.6 938,122 + -0.1 938,122 + -0.5 938,123 - -0.1 938,123 - -0.3 938,123 - +0.6 938,128 + -0.2 938,128 + -1.7 938,128 + +1.0 938,128 + -1.4 938,129 - -0.1 938,129 - +0.6 938,131 - +0.4 938,131 - +0.4 938,197 - -0.2 938,207 + +0.1 938,207 + +0.1 938,208 - +0.9 938,222 - Echvi_0821 0.11 -0.9 938,239 - Echvi_0821 0.15 -0.1 938,313 + Echvi_0821 0.33 -1.8 938,317 + Echvi_0821 0.34 +0.3 938,317 + Echvi_0821 0.34 -0.2 938,317 + Echvi_0821 0.34 -0.4 938,318 - Echvi_0821 0.35 -0.5 938,318 - Echvi_0821 0.35 -0.3 938,318 - Echvi_0821 0.35 +0.6 938,323 + Echvi_0821 0.36 +0.2 938,323 + Echvi_0821 0.36 +0.4 938,323 + Echvi_0821 0.36 -0.5 938,323 + Echvi_0821 0.36 +0.4 938,324 - Echvi_0821 0.36 -1.9 938,324 - Echvi_0821 0.36 +0.3 938,324 - Echvi_0821 0.36 -0.9 938,327 + Echvi_0821 0.37 +0.8 938,327 + Echvi_0821 0.37 +0.0 938,331 - Echvi_0821 0.38 -2.3 938,331 - Echvi_0821 0.38 +0.2 938,331 - Echvi_0821 0.38 -1.2 938,343 - Echvi_0821 0.41 -1.0 938,344 + Echvi_0821 0.41 -0.1 938,344 + Echvi_0821 0.41 +0.0 938,344 + Echvi_0821 0.41 +1.6 938,344 + Echvi_0821 0.41 +0.2 938,345 - Echvi_0821 0.41 -0.2 938,468 - Echvi_0821 0.72 -0.5 938,468 - Echvi_0821 0.72 -1.2 938,519 + Echvi_0821 0.85 +0.8 938,520 - Echvi_0821 0.85 +0.8 938,561 + -0.4 938,562 - +0.4 938,572 + +0.2 938,596 - -0.5 938,644 + Echvi_0822 0.11 +0.9
Or see this region's nucleotide sequence