Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0210

Experiment: m.b. Lomefloxacin 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0209 and Echvi_0210 are separated by 95 nucleotidesEchvi_0210 and Echvi_0211 are separated by 148 nucleotidesEchvi_0211 and Echvi_0212 are separated by 1 nucleotides Echvi_0209: Echvi_0209 - hypothetical protein, at 228,514 to 229,602 _0209 Echvi_0210: Echvi_0210 - Secreted and surface protein containing fasciclin-like repeats, at 229,698 to 230,642 _0210 Echvi_0211: Echvi_0211 - hypothetical protein, at 230,791 to 231,258 _0211 Echvi_0212: Echvi_0212 - Sulfite oxidase and related enzymes, at 231,260 to 232,507 _0212 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2at 228.729 kb on + strand, within Echvi_0209at 228.730 kb on - strand, within Echvi_0209at 228.736 kb on - strand, within Echvi_0209at 228.760 kb on + strand, within Echvi_0209at 228.767 kb on + strand, within Echvi_0209at 228.814 kb on - strand, within Echvi_0209at 229.021 kb on + strand, within Echvi_0209at 229.039 kb on + strand, within Echvi_0209at 229.120 kb on + strand, within Echvi_0209at 229.120 kb on + strand, within Echvi_0209at 229.121 kb on - strand, within Echvi_0209at 229.130 kb on + strand, within Echvi_0209at 229.130 kb on + strand, within Echvi_0209at 229.130 kb on + strand, within Echvi_0209at 229.130 kb on + strand, within Echvi_0209at 229.170 kb on - strand, within Echvi_0209at 229.186 kb on + strand, within Echvi_0209at 229.206 kb on + strand, within Echvi_0209at 229.207 kb on - strand, within Echvi_0209at 229.242 kb on + strand, within Echvi_0209at 229.243 kb on - strand, within Echvi_0209at 229.318 kb on - strand, within Echvi_0209at 229.336 kb on - strand, within Echvi_0209at 229.346 kb on - strand, within Echvi_0209at 229.375 kb on + strand, within Echvi_0209at 229.376 kb on - strand, within Echvi_0209at 229.408 kb on - strand, within Echvi_0209at 229.443 kb on + strand, within Echvi_0209at 229.443 kb on + strand, within Echvi_0209at 229.500 kb on + strandat 229.501 kb on - strandat 229.501 kb on - strandat 229.501 kb on - strandat 229.543 kb on + strandat 229.544 kb on - strandat 229.579 kb on - strandat 229.583 kb on - strandat 229.627 kb on + strandat 229.642 kb on + strandat 229.760 kb on + strandat 229.763 kb on + strandat 229.763 kb on + strandat 229.764 kb on - strandat 229.791 kb on - strandat 229.827 kb on - strand, within Echvi_0210at 229.831 kb on - strand, within Echvi_0210at 229.934 kb on + strand, within Echvi_0210at 229.963 kb on + strand, within Echvi_0210at 229.964 kb on - strand, within Echvi_0210at 229.965 kb on + strand, within Echvi_0210at 229.965 kb on + strand, within Echvi_0210at 229.965 kb on + strand, within Echvi_0210at 230.118 kb on + strand, within Echvi_0210at 230.183 kb on + strand, within Echvi_0210at 230.184 kb on - strand, within Echvi_0210at 230.184 kb on - strand, within Echvi_0210at 230.184 kb on - strand, within Echvi_0210at 230.184 kb on - strand, within Echvi_0210at 230.248 kb on + strand, within Echvi_0210at 230.249 kb on - strand, within Echvi_0210at 230.249 kb on - strand, within Echvi_0210at 230.249 kb on - strand, within Echvi_0210at 230.271 kb on - strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.275 kb on - strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.349 kb on - strand, within Echvi_0210at 230.349 kb on - strand, within Echvi_0210at 230.361 kb on + strand, within Echvi_0210at 230.361 kb on + strand, within Echvi_0210at 230.362 kb on - strand, within Echvi_0210at 230.379 kb on - strand, within Echvi_0210at 230.385 kb on - strand, within Echvi_0210at 230.428 kb on - strand, within Echvi_0210at 230.659 kb on - strandat 230.691 kb on + strandat 230.861 kb on + strand, within Echvi_0211at 230.861 kb on + strand, within Echvi_0211at 230.862 kb on - strand, within Echvi_0211at 231.155 kb on + strand, within Echvi_0211at 231.155 kb on + strand, within Echvi_0211at 231.156 kb on - strand, within Echvi_0211at 231.181 kb on + strand, within Echvi_0211at 231.232 kb on + strandat 231.262 kb on - strandat 231.267 kb on - strandat 231.267 kb on - strandat 231.295 kb on + strandat 231.296 kb on - strandat 231.381 kb on + strandat 231.381 kb on + strandat 231.382 kb on - strandat 231.382 kb on - strandat 231.385 kb on - strand, within Echvi_0212at 231.458 kb on - strand, within Echvi_0212at 231.458 kb on - strand, within Echvi_0212at 231.617 kb on + strand, within Echvi_0212at 231.618 kb on - strand, within Echvi_0212at 231.622 kb on + strand, within Echvi_0212at 231.623 kb on - strand, within Echvi_0212

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0125 mM
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228,729 + Echvi_0209 0.20 -0.0
228,730 - Echvi_0209 0.20 -0.3
228,736 - Echvi_0209 0.20 -0.1
228,760 + Echvi_0209 0.23 +0.2
228,767 + Echvi_0209 0.23 +0.6
228,814 - Echvi_0209 0.28 +1.0
229,021 + Echvi_0209 0.47 -0.3
229,039 + Echvi_0209 0.48 -0.3
229,120 + Echvi_0209 0.56 +0.8
229,120 + Echvi_0209 0.56 -1.0
229,121 - Echvi_0209 0.56 -1.2
229,130 + Echvi_0209 0.57 -0.6
229,130 + Echvi_0209 0.57 -2.3
229,130 + Echvi_0209 0.57 +1.3
229,130 + Echvi_0209 0.57 +0.9
229,170 - Echvi_0209 0.60 +0.2
229,186 + Echvi_0209 0.62 +0.2
229,206 + Echvi_0209 0.64 +0.4
229,207 - Echvi_0209 0.64 +1.5
229,242 + Echvi_0209 0.67 +0.5
229,243 - Echvi_0209 0.67 -2.6
229,318 - Echvi_0209 0.74 -0.1
229,336 - Echvi_0209 0.75 +1.1
229,346 - Echvi_0209 0.76 +0.6
229,375 + Echvi_0209 0.79 -0.4
229,376 - Echvi_0209 0.79 -0.7
229,408 - Echvi_0209 0.82 -0.2
229,443 + Echvi_0209 0.85 -0.7
229,443 + Echvi_0209 0.85 -0.4
229,500 + -0.2
229,501 - +0.4
229,501 - -0.5
229,501 - +1.5
229,543 + +0.2
229,544 - +1.2
229,579 - -0.6
229,583 - -0.9
229,627 + +1.0
229,642 + +0.2
229,760 + -0.3
229,763 + +2.1
229,763 + +0.4
229,764 - -0.6
229,791 - +0.4
229,827 - Echvi_0210 0.14 +1.9
229,831 - Echvi_0210 0.14 -0.7
229,934 + Echvi_0210 0.25 -1.1
229,963 + Echvi_0210 0.28 +0.5
229,964 - Echvi_0210 0.28 -0.0
229,965 + Echvi_0210 0.28 +0.9
229,965 + Echvi_0210 0.28 -0.0
229,965 + Echvi_0210 0.28 -0.7
230,118 + Echvi_0210 0.44 +1.8
230,183 + Echvi_0210 0.51 +0.2
230,184 - Echvi_0210 0.51 +1.4
230,184 - Echvi_0210 0.51 +0.2
230,184 - Echvi_0210 0.51 -2.1
230,184 - Echvi_0210 0.51 +0.4
230,248 + Echvi_0210 0.58 +0.1
230,249 - Echvi_0210 0.58 +0.4
230,249 - Echvi_0210 0.58 -0.1
230,249 - Echvi_0210 0.58 -1.4
230,271 - Echvi_0210 0.61 -0.1
230,274 + Echvi_0210 0.61 +1.2
230,274 + Echvi_0210 0.61 -0.6
230,274 + Echvi_0210 0.61 -0.8
230,274 + Echvi_0210 0.61 -0.1
230,275 - Echvi_0210 0.61 -0.4
230,326 + Echvi_0210 0.66 -1.1
230,326 + Echvi_0210 0.66 +0.2
230,326 + Echvi_0210 0.66 +0.0
230,326 + Echvi_0210 0.66 +0.1
230,326 + Echvi_0210 0.66 -0.5
230,327 - Echvi_0210 0.67 -0.4
230,327 - Echvi_0210 0.67 -0.2
230,327 - Echvi_0210 0.67 +0.1
230,327 - Echvi_0210 0.67 +1.1
230,349 - Echvi_0210 0.69 +0.3
230,349 - Echvi_0210 0.69 +0.4
230,361 + Echvi_0210 0.70 +1.8
230,361 + Echvi_0210 0.70 +0.2
230,362 - Echvi_0210 0.70 +0.8
230,379 - Echvi_0210 0.72 -1.2
230,385 - Echvi_0210 0.73 +0.8
230,428 - Echvi_0210 0.77 +1.2
230,659 - +1.6
230,691 + +0.3
230,861 + Echvi_0211 0.15 +1.0
230,861 + Echvi_0211 0.15 +0.3
230,862 - Echvi_0211 0.15 -0.2
231,155 + Echvi_0211 0.78 +0.1
231,155 + Echvi_0211 0.78 -1.2
231,156 - Echvi_0211 0.78 -0.9
231,181 + Echvi_0211 0.83 +0.4
231,232 + -1.7
231,262 - -0.6
231,267 - -0.2
231,267 - +0.4
231,295 + +2.0
231,296 - -0.1
231,381 + +0.1
231,381 + +0.7
231,382 - +0.2
231,382 - -0.7
231,385 - Echvi_0212 0.10 -0.9
231,458 - Echvi_0212 0.16 +0.0
231,458 - Echvi_0212 0.16 +0.4
231,617 + Echvi_0212 0.29 +2.6
231,618 - Echvi_0212 0.29 -0.6
231,622 + Echvi_0212 0.29 -0.4
231,623 - Echvi_0212 0.29 +0.4

Or see this region's nucleotide sequence