Experiment: Methyl alpha-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3723 and Atu3724 are separated by 27 nucleotides Atu3724 and Atu3725 are separated by 246 nucleotides Atu3725 and Atu3726 are separated by 146 nucleotides
Atu3723: Atu3723 - Holliday junction DNA helicase RuvA, at 803,458 to 804,075
Atu3723
Atu3724: Atu3724 - Holliday junction resolvase, at 804,103 to 804,615
Atu3724
Atu3725: Atu3725 - methyl-accepting chemotaxis protein, at 804,862 to 807,171
Atu3725
Atu3726: Atu3726 - flavin dependent oxidoreductase, at 807,318 to 808,319
Atu3726
Position (kb) 804
805
806
807
808 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 803.908 kb on + strand, within Atu3723 at 803.937 kb on + strand, within Atu3723 at 804.118 kb on - strand at 804.634 kb on + strand at 804.715 kb on - strand at 804.728 kb on + strand at 804.736 kb on - strand at 804.783 kb on - strand at 804.783 kb on - strand at 804.843 kb on + strand at 804.963 kb on - strand at 804.968 kb on - strand at 804.974 kb on + strand at 805.031 kb on + strand at 805.033 kb on + strand at 805.061 kb on - strand at 805.091 kb on - strand at 805.141 kb on - strand, within Atu3725 at 805.143 kb on - strand, within Atu3725 at 805.185 kb on - strand, within Atu3725 at 805.196 kb on - strand, within Atu3725 at 805.240 kb on - strand, within Atu3725 at 805.266 kb on + strand, within Atu3725 at 805.274 kb on - strand, within Atu3725 at 805.303 kb on + strand, within Atu3725 at 805.313 kb on - strand, within Atu3725 at 805.581 kb on - strand, within Atu3725 at 805.714 kb on - strand, within Atu3725 at 805.755 kb on + strand, within Atu3725 at 805.756 kb on + strand, within Atu3725 at 805.756 kb on + strand, within Atu3725 at 805.764 kb on - strand, within Atu3725 at 805.764 kb on - strand, within Atu3725 at 805.764 kb on - strand, within Atu3725 at 805.773 kb on + strand, within Atu3725 at 805.781 kb on - strand, within Atu3725 at 805.841 kb on - strand, within Atu3725 at 805.918 kb on - strand, within Atu3725 at 806.075 kb on - strand, within Atu3725 at 806.121 kb on + strand, within Atu3725 at 806.131 kb on - strand, within Atu3725 at 806.155 kb on - strand, within Atu3725 at 806.155 kb on - strand, within Atu3725 at 806.229 kb on - strand, within Atu3725 at 806.229 kb on - strand, within Atu3725 at 806.229 kb on - strand, within Atu3725 at 806.242 kb on + strand, within Atu3725 at 806.466 kb on - strand, within Atu3725 at 806.515 kb on - strand, within Atu3725 at 806.525 kb on - strand, within Atu3725 at 806.547 kb on - strand, within Atu3725 at 806.583 kb on - strand, within Atu3725 at 806.596 kb on - strand, within Atu3725 at 806.628 kb on - strand, within Atu3725 at 806.715 kb on - strand, within Atu3725 at 806.785 kb on + strand, within Atu3725 at 806.842 kb on + strand, within Atu3725 at 806.849 kb on - strand, within Atu3725 at 807.013 kb on - strand at 807.100 kb on - strand at 807.128 kb on - strand at 807.282 kb on - strand at 807.355 kb on + strand at 807.360 kb on + strand at 807.360 kb on + strand at 807.363 kb on - strand at 807.515 kb on - strand, within Atu3726 at 807.544 kb on + strand, within Atu3726 at 807.587 kb on + strand, within Atu3726 at 807.595 kb on - strand, within Atu3726 at 807.595 kb on - strand, within Atu3726 at 807.739 kb on + strand, within Atu3726 at 807.742 kb on - strand, within Atu3726 at 807.747 kb on - strand, within Atu3726 at 807.860 kb on + strand, within Atu3726 at 807.860 kb on + strand, within Atu3726 at 807.914 kb on + strand, within Atu3726 at 807.937 kb on - strand, within Atu3726 at 807.955 kb on + strand, within Atu3726 at 807.956 kb on + strand, within Atu3726 at 807.956 kb on + strand, within Atu3726 at 808.093 kb on + strand, within Atu3726 at 808.094 kb on - strand, within Atu3726 at 808.101 kb on - strand, within Atu3726
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl alpha-D-glucopyranoside (C) remove 803,908 + Atu3723 0.73 +1.0 803,937 + Atu3723 0.78 +1.4 804,118 - -0.1 804,634 + -0.6 804,715 - +1.5 804,728 + +0.1 804,736 - +0.5 804,783 - +0.4 804,783 - -0.2 804,843 + +0.6 804,963 - -0.3 804,968 - +4.2 804,974 + -0.1 805,031 + -0.1 805,033 + +0.7 805,061 - -0.3 805,091 - +0.2 805,141 - Atu3725 0.12 -0.6 805,143 - Atu3725 0.12 -0.3 805,185 - Atu3725 0.14 +0.5 805,196 - Atu3725 0.14 +0.1 805,240 - Atu3725 0.16 -0.2 805,266 + Atu3725 0.17 -0.2 805,274 - Atu3725 0.18 +0.1 805,303 + Atu3725 0.19 +0.0 805,313 - Atu3725 0.20 -0.2 805,581 - Atu3725 0.31 -0.2 805,714 - Atu3725 0.37 -0.1 805,755 + Atu3725 0.39 -0.6 805,756 + Atu3725 0.39 -0.4 805,756 + Atu3725 0.39 +0.1 805,764 - Atu3725 0.39 +0.4 805,764 - Atu3725 0.39 -1.0 805,764 - Atu3725 0.39 +2.7 805,773 + Atu3725 0.39 -0.2 805,781 - Atu3725 0.40 -0.5 805,841 - Atu3725 0.42 -1.1 805,918 - Atu3725 0.46 -0.5 806,075 - Atu3725 0.53 +0.3 806,121 + Atu3725 0.55 -0.5 806,131 - Atu3725 0.55 -0.3 806,155 - Atu3725 0.56 -0.6 806,155 - Atu3725 0.56 -0.0 806,229 - Atu3725 0.59 -0.3 806,229 - Atu3725 0.59 -0.9 806,229 - Atu3725 0.59 +0.3 806,242 + Atu3725 0.60 -0.3 806,466 - Atu3725 0.69 -0.2 806,515 - Atu3725 0.72 -1.2 806,525 - Atu3725 0.72 -1.1 806,547 - Atu3725 0.73 -0.4 806,583 - Atu3725 0.75 +0.3 806,596 - Atu3725 0.75 -0.2 806,628 - Atu3725 0.76 -0.7 806,715 - Atu3725 0.80 +0.0 806,785 + Atu3725 0.83 +0.1 806,842 + Atu3725 0.86 +0.0 806,849 - Atu3725 0.86 -0.1 807,013 - +0.1 807,100 - -0.6 807,128 - +0.1 807,282 - -0.0 807,355 + -0.5 807,360 + +1.4 807,360 + -0.3 807,363 - -0.5 807,515 - Atu3726 0.20 -0.0 807,544 + Atu3726 0.23 +2.0 807,587 + Atu3726 0.27 -0.1 807,595 - Atu3726 0.28 -0.4 807,595 - Atu3726 0.28 +0.1 807,739 + Atu3726 0.42 +0.0 807,742 - Atu3726 0.42 -0.4 807,747 - Atu3726 0.43 -0.3 807,860 + Atu3726 0.54 -0.2 807,860 + Atu3726 0.54 -0.8 807,914 + Atu3726 0.59 -0.2 807,937 - Atu3726 0.62 +0.2 807,955 + Atu3726 0.64 -0.7 807,956 + Atu3726 0.64 +0.2 807,956 + Atu3726 0.64 -0.6 808,093 + Atu3726 0.77 +1.1 808,094 - Atu3726 0.77 -0.1 808,101 - Atu3726 0.78 -2.6
Or see this region's nucleotide sequence