Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23640 and AMB_RS24700 overlap by 44 nucleotides AMB_RS24700 and AMB_RS24705 are separated by 83 nucleotides AMB_RS24705 and AMB_RS20510 are separated by 39 nucleotides
AMB_RS23640: AMB_RS23640 - hypothetical protein, at 4,451,173 to 4,454,229
_RS23640
AMB_RS24700: AMB_RS24700 - hypothetical protein, at 4,454,186 to 4,454,935
_RS24700
AMB_RS24705: AMB_RS24705 - hypothetical protein, at 4,455,019 to 4,455,216
_RS24705
AMB_RS20510: AMB_RS20510 - HlyD family type I secretion periplasmic adaptor subunit, at 4,455,256 to 4,456,641
_RS20510
Position (kb) 4455
4456 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4454.078 kb on + strand at 4454.078 kb on + strand at 4454.078 kb on + strand at 4454.078 kb on + strand at 4454.078 kb on + strand at 4454.078 kb on + strand at 4454.078 kb on + strand at 4454.078 kb on + strand at 4454.078 kb on + strand at 4454.079 kb on - strand at 4454.079 kb on - strand at 4454.079 kb on - strand at 4454.079 kb on - strand at 4454.102 kb on + strand at 4454.248 kb on + strand at 4454.248 kb on + strand at 4454.249 kb on - strand at 4454.355 kb on + strand, within AMB_RS24700 at 4454.356 kb on - strand, within AMB_RS24700 at 4454.379 kb on + strand, within AMB_RS24700 at 4454.379 kb on + strand, within AMB_RS24700 at 4454.379 kb on + strand, within AMB_RS24700 at 4454.379 kb on + strand, within AMB_RS24700 at 4454.379 kb on + strand, within AMB_RS24700 at 4454.380 kb on - strand, within AMB_RS24700 at 4454.457 kb on + strand, within AMB_RS24700 at 4454.933 kb on + strand at 4454.933 kb on + strand at 4454.934 kb on - strand at 4455.366 kb on + strand at 4455.367 kb on - strand at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.489 kb on - strand, within AMB_RS20510 at 4455.489 kb on - strand, within AMB_RS20510 at 4455.489 kb on - strand, within AMB_RS20510 at 4455.489 kb on - strand, within AMB_RS20510 at 4455.489 kb on - strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.492 kb on - strand, within AMB_RS20510 at 4455.492 kb on - strand, within AMB_RS20510 at 4455.492 kb on - strand, within AMB_RS20510 at 4455.492 kb on - strand, within AMB_RS20510 at 4455.584 kb on + strand, within AMB_RS20510 at 4455.585 kb on - strand, within AMB_RS20510 at 4455.585 kb on - strand, within AMB_RS20510 at 4455.700 kb on - strand, within AMB_RS20510 at 4456.031 kb on + strand, within AMB_RS20510 at 4456.031 kb on + strand, within AMB_RS20510 at 4456.032 kb on - strand, within AMB_RS20510 at 4456.032 kb on - strand, within AMB_RS20510 at 4456.032 kb on - strand, within AMB_RS20510
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 4,454,078 + -1.7 4,454,078 + -0.5 4,454,078 + -1.5 4,454,078 + +1.1 4,454,078 + -2.9 4,454,078 + -1.3 4,454,078 + -0.7 4,454,078 + -5.2 4,454,078 + -1.9 4,454,079 - -0.2 4,454,079 - -0.4 4,454,079 - -0.4 4,454,079 - -0.9 4,454,102 + +1.7 4,454,248 + -1.2 4,454,248 + -0.3 4,454,249 - +0.4 4,454,355 + AMB_RS24700 0.23 -1.1 4,454,356 - AMB_RS24700 0.23 -0.9 4,454,379 + AMB_RS24700 0.26 -0.3 4,454,379 + AMB_RS24700 0.26 -0.1 4,454,379 + AMB_RS24700 0.26 -0.5 4,454,379 + AMB_RS24700 0.26 -0.5 4,454,379 + AMB_RS24700 0.26 -3.1 4,454,380 - AMB_RS24700 0.26 -2.3 4,454,457 + AMB_RS24700 0.36 -1.8 4,454,933 + -1.3 4,454,933 + -1.3 4,454,934 - +0.1 4,455,366 + -0.5 4,455,367 - -2.4 4,455,488 + AMB_RS20510 0.17 +0.7 4,455,488 + AMB_RS20510 0.17 -1.9 4,455,488 + AMB_RS20510 0.17 -2.0 4,455,488 + AMB_RS20510 0.17 +0.8 4,455,488 + AMB_RS20510 0.17 -0.3 4,455,488 + AMB_RS20510 0.17 -2.2 4,455,488 + AMB_RS20510 0.17 -1.2 4,455,488 + AMB_RS20510 0.17 -0.3 4,455,488 + AMB_RS20510 0.17 +0.5 4,455,488 + AMB_RS20510 0.17 +0.4 4,455,489 - AMB_RS20510 0.17 -1.7 4,455,489 - AMB_RS20510 0.17 -0.7 4,455,489 - AMB_RS20510 0.17 -0.7 4,455,489 - AMB_RS20510 0.17 -1.3 4,455,489 - AMB_RS20510 0.17 -0.2 4,455,491 + AMB_RS20510 0.17 +0.0 4,455,491 + AMB_RS20510 0.17 +0.0 4,455,491 + AMB_RS20510 0.17 +0.2 4,455,491 + AMB_RS20510 0.17 +0.3 4,455,491 + AMB_RS20510 0.17 +1.0 4,455,491 + AMB_RS20510 0.17 +0.5 4,455,491 + AMB_RS20510 0.17 -1.4 4,455,492 - AMB_RS20510 0.17 -3.5 4,455,492 - AMB_RS20510 0.17 -0.7 4,455,492 - AMB_RS20510 0.17 +0.3 4,455,492 - AMB_RS20510 0.17 -2.7 4,455,584 + AMB_RS20510 0.24 -1.6 4,455,585 - AMB_RS20510 0.24 +0.4 4,455,585 - AMB_RS20510 0.24 -0.5 4,455,700 - AMB_RS20510 0.32 +0.2 4,456,031 + AMB_RS20510 0.56 +1.3 4,456,031 + AMB_RS20510 0.56 +0.7 4,456,032 - AMB_RS20510 0.56 -0.3 4,456,032 - AMB_RS20510 0.56 +0.1 4,456,032 - AMB_RS20510 0.56 -1.8
Or see this region's nucleotide sequence