Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02060 and AMB_RS23105 overlap by 95 nucleotides AMB_RS23105 and AMB_RS23850 overlap by 24 nucleotides AMB_RS23850 and AMB_RS02075 are separated by 36 nucleotides AMB_RS02075 and AMB_RS02080 overlap by 4 nucleotides
AMB_RS02060: AMB_RS02060 - transposase, at 434,824 to 436,361
_RS02060
AMB_RS23105: AMB_RS23105 - YecA family protein, at 436,267 to 436,824
_RS23105
AMB_RS23850: AMB_RS23850 - IS66 family transposase, at 436,801 to 437,190
_RS23850
AMB_RS02075: AMB_RS02075 - IS66 family insertion sequence hypothetical protein, at 437,227 to 437,574
_RS02075
AMB_RS02080: AMB_RS02080 - IS66 family insertion sequence hypothetical protein, at 437,571 to 437,945
_RS02080
Position (kb) 436
437
438 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 435.923 kb on + strand, within AMB_RS02060 at 436.047 kb on + strand, within AMB_RS02060 at 436.048 kb on - strand, within AMB_RS02060 at 436.209 kb on + strand at 436.209 kb on + strand at 436.209 kb on + strand at 436.209 kb on + strand at 436.209 kb on + strand at 436.210 kb on - strand at 436.210 kb on - strand at 436.210 kb on - strand at 436.210 kb on - strand at 436.374 kb on + strand, within AMB_RS23105 at 436.425 kb on + strand, within AMB_RS23105 at 436.425 kb on + strand, within AMB_RS23105 at 436.425 kb on + strand, within AMB_RS23105 at 436.425 kb on + strand, within AMB_RS23105 at 436.425 kb on + strand, within AMB_RS23105 at 436.425 kb on + strand, within AMB_RS23105 at 436.425 kb on + strand, within AMB_RS23105 at 436.425 kb on + strand, within AMB_RS23105 at 436.425 kb on + strand, within AMB_RS23105 at 436.426 kb on - strand, within AMB_RS23105 at 436.426 kb on - strand, within AMB_RS23105 at 436.426 kb on - strand, within AMB_RS23105 at 436.426 kb on - strand, within AMB_RS23105 at 436.426 kb on - strand, within AMB_RS23105 at 436.426 kb on - strand, within AMB_RS23105 at 436.426 kb on - strand, within AMB_RS23105 at 436.426 kb on - strand, within AMB_RS23105 at 436.426 kb on - strand, within AMB_RS23105 at 436.426 kb on - strand, within AMB_RS23105 at 436.585 kb on + strand, within AMB_RS23105 at 436.585 kb on + strand, within AMB_RS23105 at 436.585 kb on + strand, within AMB_RS23105 at 436.586 kb on - strand, within AMB_RS23105 at 436.586 kb on - strand, within AMB_RS23105 at 436.674 kb on - strand, within AMB_RS23105 at 438.005 kb on + strand at 438.005 kb on + strand at 438.136 kb on + strand at 438.137 kb on - strand at 438.137 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 435,923 + AMB_RS02060 0.71 -0.9 436,047 + AMB_RS02060 0.80 -2.3 436,048 - AMB_RS02060 0.80 -4.2 436,209 + +0.1 436,209 + +0.1 436,209 + -0.1 436,209 + +0.1 436,209 + -1.1 436,210 - +1.7 436,210 - -1.1 436,210 - -0.5 436,210 - -0.0 436,374 + AMB_RS23105 0.19 -1.2 436,425 + AMB_RS23105 0.28 -0.6 436,425 + AMB_RS23105 0.28 +0.2 436,425 + AMB_RS23105 0.28 -0.8 436,425 + AMB_RS23105 0.28 -2.0 436,425 + AMB_RS23105 0.28 -2.8 436,425 + AMB_RS23105 0.28 +1.5 436,425 + AMB_RS23105 0.28 +0.1 436,425 + AMB_RS23105 0.28 -0.9 436,425 + AMB_RS23105 0.28 -1.5 436,426 - AMB_RS23105 0.28 +0.7 436,426 - AMB_RS23105 0.28 -1.3 436,426 - AMB_RS23105 0.28 -0.9 436,426 - AMB_RS23105 0.28 -2.7 436,426 - AMB_RS23105 0.28 -2.7 436,426 - AMB_RS23105 0.28 +1.3 436,426 - AMB_RS23105 0.28 -1.8 436,426 - AMB_RS23105 0.28 -0.9 436,426 - AMB_RS23105 0.28 -0.5 436,426 - AMB_RS23105 0.28 -0.3 436,585 + AMB_RS23105 0.57 -0.0 436,585 + AMB_RS23105 0.57 +0.7 436,585 + AMB_RS23105 0.57 -0.6 436,586 - AMB_RS23105 0.57 +0.1 436,586 - AMB_RS23105 0.57 +0.7 436,674 - AMB_RS23105 0.73 -1.3 438,005 + -0.0 438,005 + +0.1 438,136 + +1.7 438,137 - -0.2 438,137 - -0.4
Or see this region's nucleotide sequence