Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23325

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08800 and AMB_RS23325 overlap by 26 nucleotidesAMB_RS23325 and AMB_RS08810 are separated by 3 nucleotidesAMB_RS08810 and AMB_RS08815 are separated by 11 nucleotides AMB_RS08800: AMB_RS08800 - hypothetical protein, at 1,884,675 to 1,885,376 _RS08800 AMB_RS23325: AMB_RS23325 - hypothetical protein, at 1,885,351 to 1,886,415 _RS23325 AMB_RS08810: AMB_RS08810 - phage head protein, at 1,886,419 to 1,887,348 _RS08810 AMB_RS08815: AMB_RS08815 - phage tail protein, at 1,887,360 to 1,890,977 _RS08815 Position (kb) 1885 1886 1887Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1884.556 kb on - strandat 1884.556 kb on - strandat 1885.038 kb on + strand, within AMB_RS08800at 1885.038 kb on + strand, within AMB_RS08800at 1885.038 kb on + strand, within AMB_RS08800at 1885.039 kb on - strand, within AMB_RS08800at 1885.039 kb on - strand, within AMB_RS08800at 1885.039 kb on - strand, within AMB_RS08800at 1885.043 kb on + strand, within AMB_RS08800at 1885.044 kb on - strand, within AMB_RS08800at 1885.044 kb on - strand, within AMB_RS08800at 1885.128 kb on + strand, within AMB_RS08800at 1885.129 kb on - strand, within AMB_RS08800at 1885.203 kb on + strand, within AMB_RS08800at 1885.236 kb on + strand, within AMB_RS08800at 1885.237 kb on - strand, within AMB_RS08800at 1885.309 kb on + strandat 1885.309 kb on + strandat 1885.310 kb on - strandat 1885.310 kb on - strandat 1885.567 kb on + strand, within AMB_RS23325at 1885.568 kb on - strand, within AMB_RS23325at 1885.724 kb on - strand, within AMB_RS23325at 1885.848 kb on + strand, within AMB_RS23325at 1885.849 kb on - strand, within AMB_RS23325at 1885.966 kb on + strand, within AMB_RS23325at 1885.967 kb on - strand, within AMB_RS23325at 1886.414 kb on - strandat 1886.414 kb on - strandat 1886.414 kb on - strandat 1886.560 kb on + strand, within AMB_RS08810at 1886.560 kb on + strand, within AMB_RS08810at 1886.708 kb on - strand, within AMB_RS08810at 1886.776 kb on + strand, within AMB_RS08810at 1886.813 kb on - strand, within AMB_RS08810at 1887.006 kb on + strand, within AMB_RS08810at 1887.006 kb on + strand, within AMB_RS08810at 1887.006 kb on + strand, within AMB_RS08810at 1887.007 kb on - strand, within AMB_RS08810at 1887.007 kb on - strand, within AMB_RS08810at 1887.007 kb on - strand, within AMB_RS08810at 1887.007 kb on - strand, within AMB_RS08810at 1887.028 kb on + strand, within AMB_RS08810at 1887.034 kb on + strand, within AMB_RS08810at 1887.034 kb on + strand, within AMB_RS08810at 1887.034 kb on + strand, within AMB_RS08810at 1887.034 kb on + strand, within AMB_RS08810at 1887.034 kb on + strand, within AMB_RS08810at 1887.035 kb on - strand, within AMB_RS08810at 1887.035 kb on - strand, within AMB_RS08810at 1887.035 kb on - strand, within AMB_RS08810at 1887.271 kb on - strandat 1887.341 kb on - strandat 1887.395 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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1,884,556 - -1.9
1,884,556 - -1.9
1,885,038 + AMB_RS08800 0.52 -0.9
1,885,038 + AMB_RS08800 0.52 -1.1
1,885,038 + AMB_RS08800 0.52 -1.1
1,885,039 - AMB_RS08800 0.52 -2.9
1,885,039 - AMB_RS08800 0.52 -1.9
1,885,039 - AMB_RS08800 0.52 -2.5
1,885,043 + AMB_RS08800 0.52 -1.1
1,885,044 - AMB_RS08800 0.53 -0.5
1,885,044 - AMB_RS08800 0.53 -0.5
1,885,128 + AMB_RS08800 0.65 +0.2
1,885,129 - AMB_RS08800 0.65 +0.5
1,885,203 + AMB_RS08800 0.75 +0.5
1,885,236 + AMB_RS08800 0.80 +4.0
1,885,237 - AMB_RS08800 0.80 -0.1
1,885,309 + -1.6
1,885,309 + -0.7
1,885,310 - +0.2
1,885,310 - -1.9
1,885,567 + AMB_RS23325 0.20 -2.5
1,885,568 - AMB_RS23325 0.20 -1.3
1,885,724 - AMB_RS23325 0.35 -1.5
1,885,848 + AMB_RS23325 0.47 -1.3
1,885,849 - AMB_RS23325 0.47 -0.8
1,885,966 + AMB_RS23325 0.58 -4.1
1,885,967 - AMB_RS23325 0.58 -0.1
1,886,414 - +0.9
1,886,414 - -0.1
1,886,414 - -0.4
1,886,560 + AMB_RS08810 0.15 -2.2
1,886,560 + AMB_RS08810 0.15 +0.1
1,886,708 - AMB_RS08810 0.31 +0.9
1,886,776 + AMB_RS08810 0.38 -0.3
1,886,813 - AMB_RS08810 0.42 -2.6
1,887,006 + AMB_RS08810 0.63 +0.1
1,887,006 + AMB_RS08810 0.63 -1.0
1,887,006 + AMB_RS08810 0.63 -0.3
1,887,007 - AMB_RS08810 0.63 +0.5
1,887,007 - AMB_RS08810 0.63 -0.1
1,887,007 - AMB_RS08810 0.63 -3.0
1,887,007 - AMB_RS08810 0.63 +0.3
1,887,028 + AMB_RS08810 0.65 -1.9
1,887,034 + AMB_RS08810 0.66 -0.4
1,887,034 + AMB_RS08810 0.66 -0.5
1,887,034 + AMB_RS08810 0.66 -1.0
1,887,034 + AMB_RS08810 0.66 -0.5
1,887,034 + AMB_RS08810 0.66 -1.0
1,887,035 - AMB_RS08810 0.66 +0.5
1,887,035 - AMB_RS08810 0.66 -0.5
1,887,035 - AMB_RS08810 0.66 -0.5
1,887,271 - +0.6
1,887,341 - -1.1
1,887,395 + -0.1

Or see this region's nucleotide sequence