Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20460

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20450 and AMB_RS20455 are separated by 439 nucleotidesAMB_RS20455 and AMB_RS20460 are separated by 10 nucleotidesAMB_RS20460 and AMB_RS20465 are separated by 180 nucleotidesAMB_RS20465 and AMB_RS20470 overlap by 4 nucleotides AMB_RS20450: AMB_RS20450 - hypothetical protein, at 4,446,229 to 4,446,492 _RS20450 AMB_RS20455: AMB_RS20455 - hypothetical protein, at 4,446,932 to 4,447,192 _RS20455 AMB_RS20460: AMB_RS20460 - hypothetical protein, at 4,447,203 to 4,447,469 _RS20460 AMB_RS20465: AMB_RS20465 - hypothetical protein, at 4,447,650 to 4,448,309 _RS20465 AMB_RS20470: AMB_RS20470 - hypothetical protein, at 4,448,306 to 4,449,235 _RS20470 Position (kb) 4447 4448Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 4446.312 kb on + strand, within AMB_RS20450at 4446.312 kb on + strand, within AMB_RS20450at 4446.312 kb on + strand, within AMB_RS20450at 4446.312 kb on + strand, within AMB_RS20450at 4446.313 kb on - strand, within AMB_RS20450at 4446.313 kb on - strand, within AMB_RS20450at 4446.313 kb on - strand, within AMB_RS20450at 4446.313 kb on - strand, within AMB_RS20450at 4446.313 kb on - strand, within AMB_RS20450at 4446.505 kb on + strandat 4446.512 kb on + strandat 4446.584 kb on + strandat 4446.584 kb on + strandat 4446.585 kb on - strandat 4446.592 kb on + strandat 4446.592 kb on + strandat 4446.592 kb on + strandat 4446.592 kb on + strandat 4446.592 kb on + strandat 4446.592 kb on + strandat 4446.592 kb on + strandat 4446.592 kb on + strandat 4446.817 kb on + strandat 4446.817 kb on + strandat 4446.818 kb on - strandat 4446.818 kb on - strandat 4446.818 kb on - strandat 4446.818 kb on - strandat 4446.818 kb on - strandat 4446.890 kb on + strandat 4446.950 kb on + strandat 4446.950 kb on + strandat 4446.950 kb on + strandat 4446.950 kb on + strandat 4446.951 kb on - strandat 4446.951 kb on - strandat 4446.951 kb on - strandat 4446.951 kb on - strandat 4446.951 kb on - strandat 4446.951 kb on - strandat 4447.022 kb on + strand, within AMB_RS20455at 4447.022 kb on + strand, within AMB_RS20455at 4447.022 kb on + strand, within AMB_RS20455at 4447.022 kb on + strand, within AMB_RS20455at 4447.022 kb on + strand, within AMB_RS20455at 4447.022 kb on + strand, within AMB_RS20455at 4447.022 kb on + strand, within AMB_RS20455at 4447.023 kb on - strand, within AMB_RS20455at 4447.023 kb on - strand, within AMB_RS20455at 4447.023 kb on - strand, within AMB_RS20455at 4447.023 kb on - strand, within AMB_RS20455at 4447.023 kb on - strand, within AMB_RS20455at 4447.023 kb on - strand, within AMB_RS20455at 4447.023 kb on - strand, within AMB_RS20455at 4447.037 kb on + strand, within AMB_RS20455at 4447.037 kb on + strand, within AMB_RS20455at 4447.037 kb on + strand, within AMB_RS20455at 4447.038 kb on - strand, within AMB_RS20455at 4447.038 kb on - strand, within AMB_RS20455at 4447.062 kb on + strand, within AMB_RS20455at 4447.062 kb on + strand, within AMB_RS20455at 4447.240 kb on + strand, within AMB_RS20460at 4447.240 kb on + strand, within AMB_RS20460at 4447.240 kb on + strand, within AMB_RS20460at 4447.240 kb on + strand, within AMB_RS20460at 4447.240 kb on + strand, within AMB_RS20460at 4447.241 kb on - strand, within AMB_RS20460at 4447.241 kb on - strand, within AMB_RS20460at 4447.241 kb on - strand, within AMB_RS20460at 4447.241 kb on - strand, within AMB_RS20460at 4447.496 kb on - strandat 4447.557 kb on + strandat 4447.558 kb on - strandat 4447.558 kb on - strandat 4447.704 kb on + strandat 4447.705 kb on - strandat 4447.776 kb on + strand, within AMB_RS20465at 4447.776 kb on + strand, within AMB_RS20465at 4447.777 kb on - strand, within AMB_RS20465at 4447.777 kb on - strand, within AMB_RS20465at 4447.777 kb on - strand, within AMB_RS20465at 4447.777 kb on - strand, within AMB_RS20465at 4447.976 kb on + strand, within AMB_RS20465at 4447.976 kb on + strand, within AMB_RS20465at 4447.976 kb on + strand, within AMB_RS20465at 4447.976 kb on + strand, within AMB_RS20465at 4447.976 kb on + strand, within AMB_RS20465at 4447.977 kb on - strand, within AMB_RS20465at 4447.977 kb on - strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.136 kb on + strand, within AMB_RS20465at 4448.136 kb on + strand, within AMB_RS20465at 4448.136 kb on + strand, within AMB_RS20465at 4448.136 kb on + strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.301 kb on + strandat 4448.301 kb on + strandat 4448.302 kb on - strandat 4448.302 kb on - strandat 4448.302 kb on - strandat 4448.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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4,446,312 + AMB_RS20450 0.31 -1.8
4,446,312 + AMB_RS20450 0.31 -0.4
4,446,312 + AMB_RS20450 0.31 +0.4
4,446,312 + AMB_RS20450 0.31 +0.8
4,446,313 - AMB_RS20450 0.32 +1.7
4,446,313 - AMB_RS20450 0.32 -3.8
4,446,313 - AMB_RS20450 0.32 +0.9
4,446,313 - AMB_RS20450 0.32 -0.7
4,446,313 - AMB_RS20450 0.32 +2.3
4,446,505 + -0.4
4,446,512 + -2.5
4,446,584 + +0.1
4,446,584 + -0.4
4,446,585 - -2.6
4,446,592 + -0.3
4,446,592 + -0.4
4,446,592 + -3.2
4,446,592 + -1.1
4,446,592 + -0.6
4,446,592 + -1.7
4,446,592 + -0.4
4,446,592 + -0.4
4,446,817 + +0.6
4,446,817 + -1.2
4,446,818 - -0.7
4,446,818 - +0.6
4,446,818 - -0.4
4,446,818 - -0.7
4,446,818 - +0.1
4,446,890 + -1.2
4,446,950 + -1.6
4,446,950 + -1.0
4,446,950 + -0.9
4,446,950 + -0.2
4,446,951 - -1.5
4,446,951 - +1.6
4,446,951 - +1.6
4,446,951 - +0.1
4,446,951 - +0.1
4,446,951 - -1.2
4,447,022 + AMB_RS20455 0.34 -1.4
4,447,022 + AMB_RS20455 0.34 -1.8
4,447,022 + AMB_RS20455 0.34 -0.4
4,447,022 + AMB_RS20455 0.34 -0.3
4,447,022 + AMB_RS20455 0.34 +1.6
4,447,022 + AMB_RS20455 0.34 -5.8
4,447,022 + AMB_RS20455 0.34 -1.2
4,447,023 - AMB_RS20455 0.35 -1.5
4,447,023 - AMB_RS20455 0.35 -0.4
4,447,023 - AMB_RS20455 0.35 +0.6
4,447,023 - AMB_RS20455 0.35 +0.2
4,447,023 - AMB_RS20455 0.35 -2.1
4,447,023 - AMB_RS20455 0.35 -1.8
4,447,023 - AMB_RS20455 0.35 -0.2
4,447,037 + AMB_RS20455 0.40 -0.0
4,447,037 + AMB_RS20455 0.40 +0.1
4,447,037 + AMB_RS20455 0.40 -0.7
4,447,038 - AMB_RS20455 0.41 +0.1
4,447,038 - AMB_RS20455 0.41 -1.5
4,447,062 + AMB_RS20455 0.50 -0.2
4,447,062 + AMB_RS20455 0.50 +0.1
4,447,240 + AMB_RS20460 0.14 -0.1
4,447,240 + AMB_RS20460 0.14 -3.7
4,447,240 + AMB_RS20460 0.14 -1.2
4,447,240 + AMB_RS20460 0.14 -0.4
4,447,240 + AMB_RS20460 0.14 -2.8
4,447,241 - AMB_RS20460 0.14 -3.6
4,447,241 - AMB_RS20460 0.14 -2.8
4,447,241 - AMB_RS20460 0.14 -2.4
4,447,241 - AMB_RS20460 0.14 -2.7
4,447,496 - -2.2
4,447,557 + -1.2
4,447,558 - -2.8
4,447,558 - -0.2
4,447,704 + -0.4
4,447,705 - -0.4
4,447,776 + AMB_RS20465 0.19 -1.5
4,447,776 + AMB_RS20465 0.19 -3.2
4,447,777 - AMB_RS20465 0.19 -1.4
4,447,777 - AMB_RS20465 0.19 +0.7
4,447,777 - AMB_RS20465 0.19 -0.5
4,447,777 - AMB_RS20465 0.19 +0.1
4,447,976 + AMB_RS20465 0.49 -1.5
4,447,976 + AMB_RS20465 0.49 -0.9
4,447,976 + AMB_RS20465 0.49 +1.0
4,447,976 + AMB_RS20465 0.49 -2.2
4,447,976 + AMB_RS20465 0.49 -0.4
4,447,977 - AMB_RS20465 0.50 -2.7
4,447,977 - AMB_RS20465 0.50 -0.9
4,448,001 + AMB_RS20465 0.53 +0.1
4,448,001 + AMB_RS20465 0.53 -0.5
4,448,001 + AMB_RS20465 0.53 -0.7
4,448,001 + AMB_RS20465 0.53 -0.5
4,448,001 + AMB_RS20465 0.53 -1.4
4,448,001 + AMB_RS20465 0.53 +0.7
4,448,001 + AMB_RS20465 0.53 +0.0
4,448,002 - AMB_RS20465 0.53 -0.9
4,448,002 - AMB_RS20465 0.53 +0.6
4,448,002 - AMB_RS20465 0.53 -1.2
4,448,002 - AMB_RS20465 0.53 +0.6
4,448,002 - AMB_RS20465 0.53 -1.0
4,448,002 - AMB_RS20465 0.53 +0.1
4,448,002 - AMB_RS20465 0.53 +0.7
4,448,002 - AMB_RS20465 0.53 -0.0
4,448,136 + AMB_RS20465 0.74 -0.3
4,448,136 + AMB_RS20465 0.74 +0.1
4,448,136 + AMB_RS20465 0.74 +0.5
4,448,136 + AMB_RS20465 0.74 +0.3
4,448,137 - AMB_RS20465 0.74 -1.2
4,448,137 - AMB_RS20465 0.74 +0.1
4,448,137 - AMB_RS20465 0.74 +0.9
4,448,137 - AMB_RS20465 0.74 -1.5
4,448,137 - AMB_RS20465 0.74 -0.4
4,448,137 - AMB_RS20465 0.74 -0.7
4,448,137 - AMB_RS20465 0.74 +0.1
4,448,137 - AMB_RS20465 0.74 -0.2
4,448,301 + +0.4
4,448,301 + +0.6
4,448,302 - -0.6
4,448,302 - -1.2
4,448,302 - -1.1
4,448,302 - +0.6

Or see this region's nucleotide sequence