Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20405

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20395 and AMB_RS20400 are separated by 20 nucleotidesAMB_RS20400 and AMB_RS20405 overlap by 4 nucleotidesAMB_RS20405 and AMB_RS20410 are separated by 469 nucleotidesAMB_RS20410 and AMB_RS20415 are separated by 80 nucleotidesAMB_RS20415 and AMB_RS20420 are separated by 8 nucleotides AMB_RS20395: AMB_RS20395 - hypothetical protein, at 4,438,969 to 4,439,526 _RS20395 AMB_RS20400: AMB_RS20400 - hypothetical protein, at 4,439,547 to 4,439,843 _RS20400 AMB_RS20405: AMB_RS20405 - ATPase, at 4,439,840 to 4,440,589 _RS20405 AMB_RS20410: AMB_RS20410 - DNA polymerase beta, at 4,441,059 to 4,441,181 _RS20410 AMB_RS20415: AMB_RS20415 - transposase, at 4,441,262 to 4,441,555 _RS20415 AMB_RS20420: AMB_RS20420 - IS3 family transposase, at 4,441,564 to 4,442,409 _RS20420 Position (kb) 4439 4440 4441Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4438.998 kb on + strandat 4438.999 kb on - strandat 4439.006 kb on - strandat 4439.062 kb on + strand, within AMB_RS20395at 4439.063 kb on - strand, within AMB_RS20395at 4439.065 kb on + strand, within AMB_RS20395at 4439.065 kb on + strand, within AMB_RS20395at 4439.066 kb on - strand, within AMB_RS20395at 4439.066 kb on - strand, within AMB_RS20395at 4439.066 kb on - strand, within AMB_RS20395at 4439.066 kb on - strand, within AMB_RS20395at 4439.083 kb on + strand, within AMB_RS20395at 4439.084 kb on - strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.262 kb on + strand, within AMB_RS20395at 4439.262 kb on + strand, within AMB_RS20395at 4439.263 kb on - strand, within AMB_RS20395at 4439.263 kb on - strand, within AMB_RS20395at 4439.381 kb on + strand, within AMB_RS20395at 4439.381 kb on + strand, within AMB_RS20395at 4439.381 kb on + strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.569 kb on + strandat 4439.569 kb on + strandat 4439.569 kb on + strandat 4439.609 kb on + strand, within AMB_RS20400at 4439.609 kb on + strand, within AMB_RS20400at 4439.609 kb on + strand, within AMB_RS20400at 4439.609 kb on + strand, within AMB_RS20400at 4439.609 kb on + strand, within AMB_RS20400at 4439.609 kb on + strand, within AMB_RS20400at 4439.610 kb on - strand, within AMB_RS20400at 4439.610 kb on - strand, within AMB_RS20400at 4439.610 kb on - strand, within AMB_RS20400at 4439.613 kb on + strand, within AMB_RS20400at 4439.613 kb on + strand, within AMB_RS20400at 4439.613 kb on + strand, within AMB_RS20400at 4439.613 kb on + strand, within AMB_RS20400at 4439.613 kb on + strand, within AMB_RS20400at 4439.614 kb on - strand, within AMB_RS20400at 4439.614 kb on - strand, within AMB_RS20400at 4439.614 kb on - strand, within AMB_RS20400at 4439.614 kb on - strand, within AMB_RS20400at 4439.721 kb on + strand, within AMB_RS20400at 4439.742 kb on - strand, within AMB_RS20400at 4439.760 kb on + strand, within AMB_RS20400at 4439.760 kb on + strand, within AMB_RS20400at 4439.760 kb on + strand, within AMB_RS20400at 4439.760 kb on + strand, within AMB_RS20400at 4439.760 kb on + strand, within AMB_RS20400at 4439.761 kb on - strand, within AMB_RS20400at 4439.761 kb on - strand, within AMB_RS20400at 4439.776 kb on + strand, within AMB_RS20400at 4439.776 kb on + strand, within AMB_RS20400at 4439.776 kb on + strand, within AMB_RS20400at 4439.777 kb on - strand, within AMB_RS20400at 4439.777 kb on - strand, within AMB_RS20400at 4439.777 kb on - strand, within AMB_RS20400at 4439.839 kb on + strandat 4439.839 kb on + strandat 4439.839 kb on + strandat 4439.839 kb on + strandat 4439.839 kb on + strandat 4439.840 kb on - strandat 4439.840 kb on - strandat 4439.840 kb on - strandat 4439.840 kb on - strandat 4439.840 kb on - strandat 4439.840 kb on - strandat 4440.197 kb on + strand, within AMB_RS20405at 4440.317 kb on + strand, within AMB_RS20405at 4440.317 kb on + strand, within AMB_RS20405at 4440.317 kb on + strand, within AMB_RS20405at 4440.318 kb on - strand, within AMB_RS20405at 4440.318 kb on - strand, within AMB_RS20405at 4440.802 kb on + strandat 4440.802 kb on + strandat 4440.802 kb on + strandat 4440.803 kb on - strandat 4440.803 kb on - strandat 4440.817 kb on + strandat 4440.842 kb on - strandat 4440.901 kb on + strandat 4440.901 kb on + strandat 4440.902 kb on - strandat 4440.902 kb on - strandat 4440.902 kb on - strandat 4441.025 kb on + strandat 4441.025 kb on + strandat 4441.027 kb on + strandat 4441.028 kb on - strandat 4441.028 kb on - strandat 4441.028 kb on - strandat 4441.123 kb on - strand, within AMB_RS20410at 4441.123 kb on - strand, within AMB_RS20410at 4441.155 kb on + strand, within AMB_RS20410at 4441.155 kb on + strand, within AMB_RS20410at 4441.155 kb on + strand, within AMB_RS20410at 4441.156 kb on - strand, within AMB_RS20410at 4441.156 kb on - strand, within AMB_RS20410at 4441.156 kb on - strand, within AMB_RS20410at 4441.156 kb on - strand, within AMB_RS20410at 4441.156 kb on - strand, within AMB_RS20410at 4441.156 kb on - strand, within AMB_RS20410at 4441.156 kb on - strand, within AMB_RS20410at 4441.156 kb on - strand, within AMB_RS20410at 4441.156 kb on - strand, within AMB_RS20410at 4441.188 kb on - strandat 4441.188 kb on - strandat 4441.219 kb on - strandat 4441.219 kb on - strandat 4441.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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4,438,998 + +1.3
4,438,999 - +0.7
4,439,006 - -2.8
4,439,062 + AMB_RS20395 0.17 +1.1
4,439,063 - AMB_RS20395 0.17 -0.3
4,439,065 + AMB_RS20395 0.17 -2.1
4,439,065 + AMB_RS20395 0.17 -1.8
4,439,066 - AMB_RS20395 0.17 -1.5
4,439,066 - AMB_RS20395 0.17 +0.1
4,439,066 - AMB_RS20395 0.17 +0.0
4,439,066 - AMB_RS20395 0.17 -3.3
4,439,083 + AMB_RS20395 0.20 -0.4
4,439,084 - AMB_RS20395 0.21 -0.7
4,439,260 + AMB_RS20395 0.52 -1.2
4,439,260 + AMB_RS20395 0.52 -2.4
4,439,260 + AMB_RS20395 0.52 -0.1
4,439,260 + AMB_RS20395 0.52 -0.7
4,439,260 + AMB_RS20395 0.52 -1.4
4,439,260 + AMB_RS20395 0.52 -0.3
4,439,261 - AMB_RS20395 0.52 +0.0
4,439,261 - AMB_RS20395 0.52 -1.4
4,439,261 - AMB_RS20395 0.52 -0.4
4,439,261 - AMB_RS20395 0.52 -1.4
4,439,261 - AMB_RS20395 0.52 -0.2
4,439,261 - AMB_RS20395 0.52 -2.7
4,439,261 - AMB_RS20395 0.52 -1.8
4,439,262 + AMB_RS20395 0.53 -0.1
4,439,262 + AMB_RS20395 0.53 -0.4
4,439,263 - AMB_RS20395 0.53 -0.8
4,439,263 - AMB_RS20395 0.53 -3.5
4,439,381 + AMB_RS20395 0.74 -1.9
4,439,381 + AMB_RS20395 0.74 -3.0
4,439,381 + AMB_RS20395 0.74 -0.1
4,439,382 - AMB_RS20395 0.74 -0.4
4,439,382 - AMB_RS20395 0.74 -0.1
4,439,382 - AMB_RS20395 0.74 -2.2
4,439,382 - AMB_RS20395 0.74 -0.3
4,439,382 - AMB_RS20395 0.74 -0.5
4,439,382 - AMB_RS20395 0.74 -0.4
4,439,383 + AMB_RS20395 0.74 -0.0
4,439,383 + AMB_RS20395 0.74 -1.5
4,439,383 + AMB_RS20395 0.74 -0.6
4,439,383 + AMB_RS20395 0.74 -0.5
4,439,383 + AMB_RS20395 0.74 -1.9
4,439,383 + AMB_RS20395 0.74 -2.1
4,439,383 + AMB_RS20395 0.74 -0.9
4,439,383 + AMB_RS20395 0.74 -1.4
4,439,384 - AMB_RS20395 0.74 -0.2
4,439,384 - AMB_RS20395 0.74 -2.0
4,439,384 - AMB_RS20395 0.74 -1.3
4,439,384 - AMB_RS20395 0.74 -1.5
4,439,384 - AMB_RS20395 0.74 -3.5
4,439,384 - AMB_RS20395 0.74 -0.9
4,439,384 - AMB_RS20395 0.74 -0.4
4,439,569 + +0.6
4,439,569 + +1.6
4,439,569 + +0.0
4,439,609 + AMB_RS20400 0.21 +1.6
4,439,609 + AMB_RS20400 0.21 -3.2
4,439,609 + AMB_RS20400 0.21 -2.4
4,439,609 + AMB_RS20400 0.21 -1.5
4,439,609 + AMB_RS20400 0.21 +0.0
4,439,609 + AMB_RS20400 0.21 +1.3
4,439,610 - AMB_RS20400 0.21 -0.7
4,439,610 - AMB_RS20400 0.21 -0.4
4,439,610 - AMB_RS20400 0.21 +0.1
4,439,613 + AMB_RS20400 0.22 -2.4
4,439,613 + AMB_RS20400 0.22 -2.6
4,439,613 + AMB_RS20400 0.22 -0.9
4,439,613 + AMB_RS20400 0.22 +0.5
4,439,613 + AMB_RS20400 0.22 +1.6
4,439,614 - AMB_RS20400 0.23 +0.1
4,439,614 - AMB_RS20400 0.23 -0.4
4,439,614 - AMB_RS20400 0.23 -1.4
4,439,614 - AMB_RS20400 0.23 -1.8
4,439,721 + AMB_RS20400 0.59 -2.8
4,439,742 - AMB_RS20400 0.66 -1.4
4,439,760 + AMB_RS20400 0.72 -2.4
4,439,760 + AMB_RS20400 0.72 -0.2
4,439,760 + AMB_RS20400 0.72 +0.3
4,439,760 + AMB_RS20400 0.72 -0.4
4,439,760 + AMB_RS20400 0.72 -1.2
4,439,761 - AMB_RS20400 0.72 -0.1
4,439,761 - AMB_RS20400 0.72 -0.4
4,439,776 + AMB_RS20400 0.77 -0.4
4,439,776 + AMB_RS20400 0.77 -0.7
4,439,776 + AMB_RS20400 0.77 -0.0
4,439,777 - AMB_RS20400 0.77 -1.7
4,439,777 - AMB_RS20400 0.77 -1.2
4,439,777 - AMB_RS20400 0.77 -4.1
4,439,839 + -0.0
4,439,839 + +0.2
4,439,839 + -1.8
4,439,839 + -0.9
4,439,839 + +1.0
4,439,840 - -1.5
4,439,840 - -0.4
4,439,840 - -0.5
4,439,840 - -0.4
4,439,840 - -0.1
4,439,840 - -1.3
4,440,197 + AMB_RS20405 0.48 +0.7
4,440,317 + AMB_RS20405 0.64 -2.1
4,440,317 + AMB_RS20405 0.64 -0.7
4,440,317 + AMB_RS20405 0.64 +0.3
4,440,318 - AMB_RS20405 0.64 -1.7
4,440,318 - AMB_RS20405 0.64 -0.7
4,440,802 + +0.4
4,440,802 + +2.1
4,440,802 + -0.4
4,440,803 - -2.0
4,440,803 - -1.4
4,440,817 + -0.2
4,440,842 - -3.2
4,440,901 + +0.5
4,440,901 + -0.4
4,440,902 - -0.7
4,440,902 - -4.0
4,440,902 - +0.4
4,441,025 + -0.4
4,441,025 + -0.0
4,441,027 + -4.3
4,441,028 - +0.1
4,441,028 - -1.0
4,441,028 - +0.0
4,441,123 - AMB_RS20410 0.52 -1.9
4,441,123 - AMB_RS20410 0.52 +0.1
4,441,155 + AMB_RS20410 0.78 -0.4
4,441,155 + AMB_RS20410 0.78 +0.3
4,441,155 + AMB_RS20410 0.78 -1.7
4,441,156 - AMB_RS20410 0.79 -1.8
4,441,156 - AMB_RS20410 0.79 +1.6
4,441,156 - AMB_RS20410 0.79 -2.8
4,441,156 - AMB_RS20410 0.79 +0.6
4,441,156 - AMB_RS20410 0.79 +0.1
4,441,156 - AMB_RS20410 0.79 +0.1
4,441,156 - AMB_RS20410 0.79 -1.1
4,441,156 - AMB_RS20410 0.79 +0.2
4,441,156 - AMB_RS20410 0.79 -2.1
4,441,188 - +0.0
4,441,188 - -0.5
4,441,219 - -1.5
4,441,219 - +1.6
4,441,219 - +0.6

Or see this region's nucleotide sequence