Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS18920 and AMB_RS18925 are separated by 258 nucleotides AMB_RS18925 and AMB_RS18930 are separated by 18 nucleotides AMB_RS18930 and AMB_RS18935 overlap by 4 nucleotides
AMB_RS18920: AMB_RS18920 - Flp family type IVb pilin, at 4,114,081 to 4,114,275
_RS18920
AMB_RS18925: AMB_RS18925 - type 4 prepilin peptidase 1, at 4,114,534 to 4,115,016
_RS18925
AMB_RS18930: AMB_RS18930 - Flp pilus assembly protein CpaB, at 4,115,035 to 4,115,937
_RS18930
AMB_RS18935: AMB_RS18935 - Flp pilus assembly protein, secretin CpaC, at 4,115,934 to 4,117,421
_RS18935
Position (kb)
4115
4116 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4114.442 kb on - strand at 4115.227 kb on + strand, within AMB_RS18930 at 4116.145 kb on + strand, within AMB_RS18935 at 4116.429 kb on + strand, within AMB_RS18935 at 4116.429 kb on + strand, within AMB_RS18935 at 4116.429 kb on + strand, within AMB_RS18935 at 4116.429 kb on + strand, within AMB_RS18935 at 4116.430 kb on - strand, within AMB_RS18935 at 4116.430 kb on - strand, within AMB_RS18935 at 4116.430 kb on - strand, within AMB_RS18935 at 4116.430 kb on - strand, within AMB_RS18935 at 4116.912 kb on + strand, within AMB_RS18935 at 4116.912 kb on + strand, within AMB_RS18935 at 4116.912 kb on + strand, within AMB_RS18935
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 4,114,442 - -2.9 4,115,227 + AMB_RS18930 0.21 -2.2 4,116,145 + AMB_RS18935 0.14 +0.0 4,116,429 + AMB_RS18935 0.33 -0.7 4,116,429 + AMB_RS18935 0.33 -0.2 4,116,429 + AMB_RS18935 0.33 -1.4 4,116,429 + AMB_RS18935 0.33 +0.7 4,116,430 - AMB_RS18935 0.33 -0.3 4,116,430 - AMB_RS18935 0.33 -0.3 4,116,430 - AMB_RS18935 0.33 -3.5 4,116,430 - AMB_RS18935 0.33 +0.5 4,116,912 + AMB_RS18935 0.66 +0.0 4,116,912 + AMB_RS18935 0.66 +0.0 4,116,912 + AMB_RS18935 0.66 -0.7
Or see this region's nucleotide sequence