Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16120

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16115 and AMB_RS16120 are separated by 18 nucleotidesAMB_RS16120 and AMB_RS16125 are separated by 121 nucleotides AMB_RS16115: AMB_RS16115 - adenylosuccinate synthetase, at 3,455,514 to 3,456,803 _RS16115 AMB_RS16120: AMB_RS16120 - ATP phosphoribosyltransferase regulatory subunit, at 3,456,822 to 3,457,961 _RS16120 AMB_RS16125: AMB_RS16125 - chemotaxis protein, at 3,458,083 to 3,459,480 _RS16125 Position (kb) 3456 3457 3458Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3456.824 kb on - strandat 3456.824 kb on - strandat 3458.085 kb on - strandat 3458.256 kb on - strand, within AMB_RS16125at 3458.274 kb on + strand, within AMB_RS16125at 3458.274 kb on + strand, within AMB_RS16125at 3458.275 kb on - strand, within AMB_RS16125

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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3,456,824 - +0.1
3,456,824 - -4.4
3,458,085 - -0.7
3,458,256 - AMB_RS16125 0.12 +0.4
3,458,274 + AMB_RS16125 0.14 +1.8
3,458,274 + AMB_RS16125 0.14 +0.8
3,458,275 - AMB_RS16125 0.14 -2.8

Or see this region's nucleotide sequence