Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14105

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14100 and AMB_RS14105 are separated by 81 nucleotidesAMB_RS14105 and AMB_RS14110 are separated by 197 nucleotidesAMB_RS14110 and AMB_RS14115 are separated by 105 nucleotides AMB_RS14100: AMB_RS14100 - glutamate--tRNA ligase, at 2,995,344 to 2,996,777 _RS14100 AMB_RS14105: AMB_RS14105 - citrate (Si)-synthase, at 2,996,859 to 2,998,175 _RS14105 AMB_RS14110: AMB_RS14110 - cyclic nucleotide-binding domain-containing protein, at 2,998,373 to 2,998,714 _RS14110 AMB_RS14115: AMB_RS14115 - RNA polymerase sigma factor RpoH, at 2,998,820 to 2,999,698 _RS14115 Position (kb) 2996 2997 2998 2999Strain fitness (log2 ratio) -3 -2 -1 0 1at 2996.820 kb on + strandat 2996.826 kb on + strandat 2996.826 kb on + strandat 2996.838 kb on + strandat 2996.838 kb on + strandat 2996.838 kb on + strandat 2998.173 kb on + strandat 2998.352 kb on + strandat 2998.520 kb on - strand, within AMB_RS14110

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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2,996,820 + -0.1
2,996,826 + -2.8
2,996,826 + -0.7
2,996,838 + +0.9
2,996,838 + -0.8
2,996,838 + -0.0
2,998,173 + -0.5
2,998,352 + -0.1
2,998,520 - AMB_RS14110 0.43 -0.8

Or see this region's nucleotide sequence