Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10885

Experiment: 150_an_nonmag_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_1
2,329,202	+				-1.2
2,329,349	+		AMB_RS10880	0.22	-0.9
2,329,349	+		AMB_RS10880	0.22	-0.9
2,329,349	+		AMB_RS10880	0.22	-0.6
2,329,350	-		AMB_RS10880	0.22	-0.2
2,329,382	+		AMB_RS10880	0.30	-2.4
2,329,383	-		AMB_RS10880	0.30	+0.4
2,329,383	-		AMB_RS10880	0.30	-0.2
2,329,394	+		AMB_RS10880	0.33	-0.2
2,329,394	+		AMB_RS10880	0.33	-0.2
2,329,394	+		AMB_RS10880	0.33	+0.5
2,329,394	+		AMB_RS10880	0.33	-3.0
2,329,395	-		AMB_RS10880	0.33	-0.6
2,329,496	+		AMB_RS10880	0.57	+0.2
2,329,497	-		AMB_RS10880	0.57	-1.9
2,329,497	-		AMB_RS10880	0.57	-0.9
2,329,497	-		AMB_RS10880	0.57	-0.6
2,329,565	+		AMB_RS10880	0.74	-0.7
2,329,565	+		AMB_RS10880	0.74	+1.4
2,329,565	+		AMB_RS10880	0.74	-2.0
2,329,568	+		AMB_RS10880	0.75	-1.0
2,329,568	+		AMB_RS10880	0.75	+0.4
2,329,640	+				-2.2
2,329,684	+				+1.1
2,329,684	+				-0.9
2,329,685	-				-2.4
2,329,685	-				-0.1
2,329,685	-				+0.8
2,329,685	-				-0.3
2,329,685	-				-0.9
2,329,685	-				-1.2
2,329,769	-				-2.3
2,329,782	+				-0.2
2,329,789	+				-0.7
2,329,789	+				-1.2
2,329,790	-				-2.0
2,329,790	-				-0.3
2,329,790	-				+1.4
2,329,841	+				-3.4
2,329,841	+				-1.2
2,329,842	-				-0.2
2,329,957	+				-1.2
2,329,957	+				-3.3
2,329,957	+				+0.2
2,329,999	-				-0.2
2,329,999	-				-0.9
2,330,017	-				-2.0
2,330,017	-				+0.1
2,330,041	+				-0.9
2,330,042	-				+2.2
2,330,081	-				+1.1
2,330,114	-				-0.1
2,330,114	-				+1.3
2,330,114	-				-3.2
2,330,114	-				-1.2
2,330,225	-		AMB_RS10885	0.12	-1.1
2,330,245	+		AMB_RS10885	0.13	-0.5
2,330,245	+		AMB_RS10885	0.13	-1.4
2,330,281	+		AMB_RS10885	0.14	-3.5
2,330,281	+		AMB_RS10885	0.14	+0.4
2,330,282	-		AMB_RS10885	0.15	-0.3
2,330,330	-		AMB_RS10885	0.17	-1.0
2,330,330	-		AMB_RS10885	0.17	+0.5
2,330,330	-		AMB_RS10885	0.17	-2.3
2,330,407	+		AMB_RS10885	0.21	-2.4
2,330,407	+		AMB_RS10885	0.21	-0.3
2,330,408	-		AMB_RS10885	0.21	-1.6
2,330,408	-		AMB_RS10885	0.21	-4.0
2,330,503	+		AMB_RS10885	0.26	-3.2
2,330,503	+		AMB_RS10885	0.26	+0.7
2,330,503	+		AMB_RS10885	0.26	-1.2
2,330,503	+		AMB_RS10885	0.26	-1.6
2,330,504	-		AMB_RS10885	0.26	+0.5
2,330,504	-		AMB_RS10885	0.26	+0.4
2,330,504	-		AMB_RS10885	0.26	+0.0
2,330,504	-		AMB_RS10885	0.26	+0.7
2,330,504	-		AMB_RS10885	0.26	-2.2
2,330,608	+		AMB_RS10885	0.31	-2.5
2,330,609	-		AMB_RS10885	0.31	-3.0
2,330,743	+		AMB_RS10885	0.38	+0.1
2,330,860	+		AMB_RS10885	0.44	-0.5
2,330,860	+		AMB_RS10885	0.44	-0.2
2,330,860	+		AMB_RS10885	0.44	-1.1
2,330,860	+		AMB_RS10885	0.44	+0.9
2,330,860	+		AMB_RS10885	0.44	-0.9
2,330,860	+		AMB_RS10885	0.44	-0.2
2,330,860	+		AMB_RS10885	0.44	+0.3
2,330,861	-		AMB_RS10885	0.44	-1.3
2,330,861	-		AMB_RS10885	0.44	+0.5
2,331,001	+		AMB_RS10885	0.51	+2.5
2,331,001	+		AMB_RS10885	0.51	-0.4
2,331,034	+		AMB_RS10885	0.53	-0.6
2,331,034	+		AMB_RS10885	0.53	+1.6
2,331,034	+		AMB_RS10885	0.53	+0.9
2,331,035	-		AMB_RS10885	0.53	-0.2
2,331,035	-		AMB_RS10885	0.53	-1.7
2,331,035	-		AMB_RS10885	0.53	-2.2
2,331,035	-		AMB_RS10885	0.53	-0.9
2,331,035	-		AMB_RS10885	0.53	+0.4
2,331,154	+		AMB_RS10885	0.59	-0.9
2,331,155	-		AMB_RS10885	0.59	-0.2
2,331,155	-		AMB_RS10885	0.59	-1.6
2,331,172	+		AMB_RS10885	0.60	-2.2
2,331,172	+		AMB_RS10885	0.60	-0.2
2,331,172	+		AMB_RS10885	0.60	-1.2
2,331,172	+		AMB_RS10885	0.60	-0.6
2,331,173	-		AMB_RS10885	0.60	-0.8
2,331,226	+		AMB_RS10885	0.63	-1.6
2,331,226	+		AMB_RS10885	0.63	+0.4
2,331,226	+		AMB_RS10885	0.63	+0.8
2,331,226	+		AMB_RS10885	0.63	+0.5
2,331,226	+		AMB_RS10885	0.63	+0.4
2,331,227	-		AMB_RS10885	0.63	-2.0
2,331,305	-		AMB_RS10885	0.67	-1.2
2,331,306	+		AMB_RS10885	0.67	-0.5
2,331,306	+		AMB_RS10885	0.67	+0.1
2,331,306	+		AMB_RS10885	0.67	-0.4
2,331,307	-		AMB_RS10885	0.67	-0.6
2,331,307	-		AMB_RS10885	0.67	-0.5
2,331,307	-		AMB_RS10885	0.67	+2.0
2,331,307	-		AMB_RS10885	0.67	+0.4
2,331,310	+		AMB_RS10885	0.67	-0.9
2,331,311	-		AMB_RS10885	0.67	-4.7
2,331,352	+		AMB_RS10885	0.69	-1.1
2,331,352	+		AMB_RS10885	0.69	-1.4
2,331,352	+		AMB_RS10885	0.69	-1.5
2,331,352	+		AMB_RS10885	0.69	+0.6
2,331,352	+		AMB_RS10885	0.69	+0.6
2,331,352	+		AMB_RS10885	0.69	+0.1
2,331,352	+		AMB_RS10885	0.69	-0.9
2,331,353	-		AMB_RS10885	0.70	-2.4
2,331,353	-		AMB_RS10885	0.70	-3.3
2,331,353	-		AMB_RS10885	0.70	-1.2
2,331,353	-		AMB_RS10885	0.70	+0.1
2,331,409	+		AMB_RS10885	0.72	-1.2
2,331,409	+		AMB_RS10885	0.72	-2.5
2,331,409	+		AMB_RS10885	0.72	-0.8
2,331,446	-		AMB_RS10885	0.74	+1.4
2,331,481	+		AMB_RS10885	0.76	-2.3
2,331,502	+		AMB_RS10885	0.77	+0.0
2,331,526	+		AMB_RS10885	0.78	-0.6
2,331,526	+		AMB_RS10885	0.78	-0.6
2,331,739	+		AMB_RS10885	0.89	+0.1
2,331,883	+				-0.6
2,331,919	+				-0.2
2,331,919	+				-1.4
2,331,919	+				-2.3
2,331,919	+				-4.0
2,331,919	+				-0.6
2,331,919	+				-2.7
2,331,919	+				+1.2
2,331,919	+				+0.5
2,331,920	-				+0.0
2,331,920	-				-1.1
2,332,021	+				-0.9
2,332,022	-				-0.6
2,332,369	+		AMB_RS10890	0.28	+0.0
2,332,369	+		AMB_RS10890	0.28	+0.7
2,332,670	+		AMB_RS10890	0.51	-0.8
2,332,670	+		AMB_RS10890	0.51	+0.0
2,332,671	-		AMB_RS10890	0.51	-1.4
2,332,671	-		AMB_RS10890	0.51	-1.7
2,332,671	-		AMB_RS10890	0.51	-2.0
2,332,671	-		AMB_RS10890	0.51	-0.4
2,332,671	-		AMB_RS10890	0.51	-0.2
2,332,671	-		AMB_RS10890	0.51	-0.4
2,332,672	+		AMB_RS10890	0.51	-1.2
2,332,694	+		AMB_RS10890	0.53	-0.7
2,332,695	-		AMB_RS10890	0.53	+0.4
2,332,695	-		AMB_RS10890	0.53	-0.2
2,332,817	+		AMB_RS10890	0.62	-1.3
2,332,817	+		AMB_RS10890	0.62	-0.6
2,332,817	+		AMB_RS10890	0.62	-2.2
2,332,818	-		AMB_RS10890	0.62	-1.6
2,332,818	-		AMB_RS10890	0.62	-3.1
2,332,911	-		AMB_RS10890	0.69	+0.3
2,332,911	-		AMB_RS10890	0.69	-0.3