Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS10740 and AMB_RS10745 are separated by 98 nucleotides AMB_RS10745 and AMB_RS10750 are separated by 163 nucleotides AMB_RS10750 and AMB_RS10755 are separated by 124 nucleotides
AMB_RS10740: AMB_RS10740 - response regulator, at 2,301,615 to 2,302,076
_RS10740
AMB_RS10745: AMB_RS10745 - 30S ribosomal protein S4, at 2,302,175 to 2,302,792
_RS10745
AMB_RS10750: AMB_RS10750 - RNA methyltransferase, at 2,302,956 to 2,303,723
_RS10750
AMB_RS10755: AMB_RS10755 - citramalate synthase, at 2,303,848 to 2,305,488
_RS10755
Position (kb)
2302
2303
2304 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2302.041 kb on - strand at 2302.047 kb on + strand at 2302.987 kb on + strand at 2302.987 kb on + strand at 2302.987 kb on + strand at 2302.987 kb on + strand at 2302.988 kb on - strand at 2302.988 kb on - strand at 2303.239 kb on + strand, within AMB_RS10750 at 2303.240 kb on - strand, within AMB_RS10750 at 2303.240 kb on - strand, within AMB_RS10750 at 2303.282 kb on - strand, within AMB_RS10750 at 2303.282 kb on - strand, within AMB_RS10750 at 2303.405 kb on + strand, within AMB_RS10750 at 2303.405 kb on + strand, within AMB_RS10750 at 2303.449 kb on + strand, within AMB_RS10750 at 2303.449 kb on + strand, within AMB_RS10750 at 2303.450 kb on - strand, within AMB_RS10750 at 2303.450 kb on - strand, within AMB_RS10750 at 2303.741 kb on + strand at 2303.741 kb on + strand at 2303.741 kb on + strand at 2303.741 kb on + strand at 2303.741 kb on + strand at 2303.742 kb on - strand at 2303.742 kb on - strand at 2303.822 kb on - strand at 2303.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 2,302,041 - +0.1 2,302,047 + -0.2 2,302,987 + +0.5 2,302,987 + +1.4 2,302,987 + -1.9 2,302,987 + -0.0 2,302,988 - -0.6 2,302,988 - -0.8 2,303,239 + AMB_RS10750 0.37 -1.2 2,303,240 - AMB_RS10750 0.37 -4.1 2,303,240 - AMB_RS10750 0.37 -0.6 2,303,282 - AMB_RS10750 0.42 -2.7 2,303,282 - AMB_RS10750 0.42 -1.5 2,303,405 + AMB_RS10750 0.58 -1.6 2,303,405 + AMB_RS10750 0.58 -1.2 2,303,449 + AMB_RS10750 0.64 +2.0 2,303,449 + AMB_RS10750 0.64 -1.4 2,303,450 - AMB_RS10750 0.64 -2.9 2,303,450 - AMB_RS10750 0.64 -0.7 2,303,741 + -1.0 2,303,741 + +0.4 2,303,741 + -0.9 2,303,741 + +1.3 2,303,741 + -2.3 2,303,742 - +1.0 2,303,742 - -2.5 2,303,822 - -0.2 2,303,850 - -1.5
Or see this region's nucleotide sequence