Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS09280 and AMB_RS09285 are separated by 185 nucleotides AMB_RS09285 and AMB_RS09290 overlap by 4 nucleotides AMB_RS09290 and AMB_RS09295 are separated by 155 nucleotides AMB_RS09295 and AMB_RS09300 are separated by 2 nucleotides
AMB_RS09280: AMB_RS09280 - ArsR family transcriptional regulator, at 1,972,651 to 1,972,950
_RS09280
AMB_RS09285: AMB_RS09285 - RNA polymerase sigma factor, at 1,973,136 to 1,973,669
_RS09285
AMB_RS09290: AMB_RS09290 - MFS transporter, at 1,973,666 to 1,974,940
_RS09290
AMB_RS09295: AMB_RS09295 - carboxymuconolactone decarboxylase family protein, at 1,975,096 to 1,975,731
_RS09295
AMB_RS09300: AMB_RS09300 - rubrerythrin, at 1,975,734 to 1,976,234
_RS09300
Position (kb) 1973
1974
1975 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1972.867 kb on + strand, within AMB_RS09280 at 1972.867 kb on + strand, within AMB_RS09280 at 1972.867 kb on + strand, within AMB_RS09280 at 1972.867 kb on + strand, within AMB_RS09280 at 1972.868 kb on - strand, within AMB_RS09280 at 1972.907 kb on - strand, within AMB_RS09280 at 1973.043 kb on - strand at 1973.811 kb on + strand, within AMB_RS09290 at 1973.811 kb on + strand, within AMB_RS09290 at 1973.811 kb on + strand, within AMB_RS09290 at 1973.812 kb on - strand, within AMB_RS09290 at 1973.812 kb on - strand, within AMB_RS09290 at 1973.971 kb on + strand, within AMB_RS09290 at 1973.971 kb on + strand, within AMB_RS09290 at 1973.972 kb on - strand, within AMB_RS09290 at 1973.972 kb on - strand, within AMB_RS09290 at 1973.972 kb on - strand, within AMB_RS09290 at 1973.972 kb on - strand, within AMB_RS09290 at 1973.990 kb on + strand, within AMB_RS09290 at 1973.990 kb on + strand, within AMB_RS09290 at 1973.991 kb on - strand, within AMB_RS09290 at 1973.991 kb on - strand, within AMB_RS09290 at 1974.089 kb on + strand, within AMB_RS09290 at 1974.089 kb on + strand, within AMB_RS09290 at 1974.089 kb on + strand, within AMB_RS09290 at 1974.090 kb on - strand, within AMB_RS09290 at 1974.090 kb on - strand, within AMB_RS09290 at 1974.530 kb on + strand, within AMB_RS09290 at 1974.530 kb on + strand, within AMB_RS09290 at 1974.530 kb on + strand, within AMB_RS09290 at 1974.530 kb on + strand, within AMB_RS09290 at 1974.530 kb on + strand, within AMB_RS09290 at 1974.531 kb on - strand, within AMB_RS09290 at 1974.587 kb on + strand, within AMB_RS09290 at 1974.587 kb on + strand, within AMB_RS09290 at 1974.588 kb on - strand, within AMB_RS09290 at 1974.588 kb on - strand, within AMB_RS09290 at 1974.588 kb on - strand, within AMB_RS09290 at 1974.588 kb on - strand, within AMB_RS09290 at 1974.650 kb on + strand, within AMB_RS09290 at 1974.709 kb on + strand, within AMB_RS09290 at 1974.710 kb on - strand, within AMB_RS09290 at 1974.818 kb on + strand at 1974.836 kb on + strand at 1974.836 kb on + strand at 1974.836 kb on + strand at 1974.836 kb on + strand at 1974.836 kb on + strand at 1974.837 kb on - strand at 1974.837 kb on - strand at 1974.837 kb on - strand at 1975.045 kb on + strand at 1975.045 kb on + strand at 1975.046 kb on - strand at 1975.582 kb on + strand, within AMB_RS09295 at 1975.591 kb on + strand, within AMB_RS09295 at 1975.591 kb on + strand, within AMB_RS09295 at 1975.592 kb on - strand, within AMB_RS09295 at 1975.592 kb on - strand, within AMB_RS09295 at 1975.626 kb on + strand, within AMB_RS09295 at 1975.626 kb on + strand, within AMB_RS09295 at 1975.626 kb on + strand, within AMB_RS09295 at 1975.626 kb on + strand, within AMB_RS09295 at 1975.627 kb on - strand, within AMB_RS09295 at 1975.627 kb on - strand, within AMB_RS09295 at 1975.674 kb on + strand at 1975.731 kb on + strand at 1975.731 kb on + strand at 1975.731 kb on + strand at 1975.731 kb on + strand at 1975.731 kb on + strand at 1975.731 kb on + strand at 1975.731 kb on + strand at 1975.731 kb on + strand at 1975.731 kb on + strand at 1975.732 kb on - strand at 1975.732 kb on - strand at 1975.732 kb on - strand at 1975.732 kb on - strand at 1975.732 kb on - strand at 1975.732 kb on - strand at 1975.732 kb on - strand at 1975.732 kb on - strand at 1975.732 kb on - strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.733 kb on + strand at 1975.734 kb on - strand at 1975.734 kb on - strand at 1975.734 kb on - strand at 1975.734 kb on - strand at 1975.734 kb on - strand at 1975.734 kb on - strand at 1975.734 kb on - strand at 1975.734 kb on - strand at 1975.734 kb on - strand at 1975.794 kb on + strand, within AMB_RS09300
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 1,972,867 + AMB_RS09280 0.72 -0.1 1,972,867 + AMB_RS09280 0.72 -2.1 1,972,867 + AMB_RS09280 0.72 -0.6 1,972,867 + AMB_RS09280 0.72 -3.1 1,972,868 - AMB_RS09280 0.72 -4.6 1,972,907 - AMB_RS09280 0.85 -2.0 1,973,043 - -0.7 1,973,811 + AMB_RS09290 0.11 +1.4 1,973,811 + AMB_RS09290 0.11 -3.5 1,973,811 + AMB_RS09290 0.11 -0.3 1,973,812 - AMB_RS09290 0.11 -1.7 1,973,812 - AMB_RS09290 0.11 -0.9 1,973,971 + AMB_RS09290 0.24 -0.1 1,973,971 + AMB_RS09290 0.24 -0.1 1,973,972 - AMB_RS09290 0.24 -0.1 1,973,972 - AMB_RS09290 0.24 -0.2 1,973,972 - AMB_RS09290 0.24 -1.9 1,973,972 - AMB_RS09290 0.24 -2.0 1,973,990 + AMB_RS09290 0.25 +0.4 1,973,990 + AMB_RS09290 0.25 +0.1 1,973,991 - AMB_RS09290 0.25 +0.3 1,973,991 - AMB_RS09290 0.25 +1.0 1,974,089 + AMB_RS09290 0.33 -0.9 1,974,089 + AMB_RS09290 0.33 -2.4 1,974,089 + AMB_RS09290 0.33 +0.3 1,974,090 - AMB_RS09290 0.33 -0.8 1,974,090 - AMB_RS09290 0.33 -1.4 1,974,530 + AMB_RS09290 0.68 -0.9 1,974,530 + AMB_RS09290 0.68 +1.3 1,974,530 + AMB_RS09290 0.68 +1.0 1,974,530 + AMB_RS09290 0.68 -3.1 1,974,530 + AMB_RS09290 0.68 +0.3 1,974,531 - AMB_RS09290 0.68 -2.5 1,974,587 + AMB_RS09290 0.72 -0.4 1,974,587 + AMB_RS09290 0.72 -0.1 1,974,588 - AMB_RS09290 0.72 +0.3 1,974,588 - AMB_RS09290 0.72 -0.1 1,974,588 - AMB_RS09290 0.72 -0.6 1,974,588 - AMB_RS09290 0.72 -1.3 1,974,650 + AMB_RS09290 0.77 -1.6 1,974,709 + AMB_RS09290 0.82 -2.1 1,974,710 - AMB_RS09290 0.82 -0.3 1,974,818 + +0.4 1,974,836 + -3.4 1,974,836 + -0.1 1,974,836 + +0.9 1,974,836 + -0.7 1,974,836 + -0.4 1,974,837 - -0.1 1,974,837 - -0.8 1,974,837 - -0.9 1,975,045 + +0.7 1,975,045 + -1.6 1,975,046 - -3.1 1,975,582 + AMB_RS09295 0.76 -2.3 1,975,591 + AMB_RS09295 0.78 -0.6 1,975,591 + AMB_RS09295 0.78 -0.6 1,975,592 - AMB_RS09295 0.78 -2.0 1,975,592 - AMB_RS09295 0.78 -1.4 1,975,626 + AMB_RS09295 0.83 -2.0 1,975,626 + AMB_RS09295 0.83 -0.9 1,975,626 + AMB_RS09295 0.83 -1.7 1,975,626 + AMB_RS09295 0.83 -0.9 1,975,627 - AMB_RS09295 0.83 -0.1 1,975,627 - AMB_RS09295 0.83 -0.6 1,975,674 + +0.2 1,975,731 + -1.0 1,975,731 + -4.2 1,975,731 + -2.6 1,975,731 + +0.3 1,975,731 + -0.1 1,975,731 + -0.9 1,975,731 + -0.3 1,975,731 + -0.9 1,975,731 + -1.4 1,975,732 - -4.4 1,975,732 - -2.3 1,975,732 - -0.1 1,975,732 - -1.5 1,975,732 - -1.1 1,975,732 - +1.2 1,975,732 - -1.6 1,975,732 - +0.6 1,975,732 - -0.1 1,975,733 + -1.9 1,975,733 + -2.4 1,975,733 + -1.1 1,975,733 + -0.6 1,975,733 + -2.5 1,975,733 + -2.3 1,975,733 + -2.8 1,975,733 + -0.5 1,975,733 + -3.7 1,975,733 + -1.6 1,975,733 + -2.4 1,975,733 + +0.4 1,975,734 - -0.9 1,975,734 - +1.4 1,975,734 - -0.4 1,975,734 - -0.2 1,975,734 - -0.0 1,975,734 - -1.9 1,975,734 - +0.1 1,975,734 - -0.7 1,975,734 - -0.0 1,975,794 + AMB_RS09300 0.12 -0.4
Or see this region's nucleotide sequence